Wall clock time and date at job start Tue Mar 31 2020 12:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33024 * 1 3 3 C 1.50694 * 120.00004 * 2 1 4 4 C 1.47061 * 119.99710 * 180.02562 * 2 1 3 5 5 O 1.21638 * 120.00561 * 0.27674 * 4 2 1 6 6 N 1.34782 * 119.99861 * 179.97438 * 4 2 1 7 7 C 1.40013 * 120.00204 * 175.05896 * 6 4 2 8 8 C 1.38870 * 120.01578 * 325.56382 * 7 6 4 9 9 C 1.38087 * 119.97983 * 179.72103 * 8 7 6 10 10 C 1.38722 * 120.01927 * 0.55238 * 9 8 7 11 11 O 1.35970 * 119.98647 * 179.69942 * 10 9 8 12 12 C 1.42902 * 117.00354 * 185.73471 * 11 10 9 13 13 H 1.08997 * 110.88502 * 32.41927 * 12 11 10 14 14 C 1.55159 * 111.00425 * 156.30632 * 12 11 10 15 15 C 1.54316 * 102.93994 * 153.57514 * 14 12 11 16 16 N 1.47026 * 107.27507 * 337.80302 * 15 14 12 17 17 C 1.36930 * 125.65049 * 178.95629 * 16 15 14 18 18 H 1.08000 * 120.00195 * 186.71210 * 17 16 15 19 19 C 1.38819 * 120.00042 * 6.72304 * 17 16 15 20 20 N 1.31619 * 119.99877 * 7.53714 * 19 17 16 21 21 Si 1.86801 * 119.99841 * 187.53420 * 19 17 16 22 22 H 1.48501 * 109.46721 * 94.98447 * 21 19 17 23 23 H 1.48500 * 109.47081 * 214.97716 * 21 19 17 24 24 H 1.48496 * 109.47530 * 334.98310 * 21 19 17 25 25 C 1.47429 * 108.69802 * 358.94390 * 16 15 14 26 26 C 1.38727 * 120.03279 * 359.72283 * 10 9 8 27 27 C 1.38082 * 120.01397 * 0.02562 * 26 10 9 28 28 H 1.07990 * 119.99889 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.99838 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47542 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47309 * 300.00302 * 3 2 1 32 32 H 1.09005 * 109.47230 * 59.99592 * 3 2 1 33 33 H 0.97006 * 119.99791 * 355.06416 * 6 4 2 34 34 H 1.08002 * 120.00893 * 359.97438 * 8 7 6 35 35 H 1.08006 * 119.99161 * 180.29829 * 9 8 7 36 36 H 1.08996 * 110.71554 * 271.93572 * 14 12 11 37 37 H 1.09000 * 110.72184 * 35.03185 * 14 12 11 38 38 H 1.09004 * 109.88696 * 97.22159 * 15 14 12 39 39 H 1.09001 * 109.88574 * 218.38641 * 15 14 12 40 40 H 0.96996 * 120.00051 * 179.97438 * 20 19 17 41 41 H 1.09000 * 110.36298 * 265.28721 * 25 16 15 42 42 H 1.09005 * 110.36381 * 142.96685 * 25 16 15 43 43 H 1.07997 * 119.99350 * 179.97438 * 26 10 9 44 44 H 1.08002 * 120.00484 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3302 0.0000 0.0000 3 6 2.0837 1.3050 0.0000 4 6 2.0655 -1.2736 -0.0006 5 8 1.4573 -2.3271 -0.0061 6 7 3.4133 -1.2737 -0.0011 7 6 4.1134 -2.4817 0.1028 8 6 3.6022 -3.5167 0.8747 9 6 4.2904 -4.7099 0.9721 10 6 5.4978 -4.8708 0.3082 11 8 6.1780 -6.0438 0.4094 12 6 7.4718 -6.0978 -0.1948 13 1 7.9629 -5.1258 -0.1492 14 6 8.3482 -7.1954 0.4646 15 6 9.3315 -7.5757 -0.6622 16 7 8.7087 -7.1853 -1.9355 17 6 9.2682 -7.3341 -3.1764 18 1 8.7774 -6.9175 -4.0436 19 6 10.4662 -8.0205 -3.3198 20 7 10.9886 -8.6545 -2.2914 21 14 11.3369 -8.0445 -4.9723 22 1 12.3584 -6.9673 -5.0092 23 1 11.9979 -9.3603 -5.1645 24 1 10.3466 -7.8249 -6.0569 25 6 7.3817 -6.6073 -1.6549 26 6 6.0120 -3.8353 -0.4585 27 6 5.3224 -2.6434 -0.5610 28 1 -0.5399 0.9352 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 3.1553 1.1060 -0.0005 31 1 1.8204 1.8767 -0.8899 32 1 1.8203 1.8767 0.8900 33 1 3.8983 -0.4367 -0.0734 34 1 2.6646 -3.3899 1.3955 35 1 3.8906 -5.5167 1.5685 36 1 8.8840 -6.7954 1.3254 37 1 7.7399 -8.0520 0.7547 38 1 10.2719 -7.0404 -0.5301 39 1 9.5101 -8.6509 -0.6513 40 1 11.8255 -9.1344 -2.3917 41 1 6.6090 -7.3710 -1.7433 42 1 7.1774 -5.7793 -2.3337 43 1 6.9522 -3.9611 -0.9747 44 1 5.7230 -1.8372 -1.1576 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231318367.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:23 Heat of formation + Delta-G solvation = -12.142392 kcal Electronic energy + Delta-G solvation = -25359.701792 eV Core-core repulsion = 21664.141106 eV Total energy + Delta-G solvation = -3695.560686 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.78407 -40.92258 -39.13883 -37.77026 -35.78208 -35.20691 -34.24067 -32.11662 -31.27368 -29.87324 -29.03574 -28.02872 -26.55976 -25.00809 -24.17412 -22.84466 -22.07825 -21.61401 -20.28923 -19.39359 -19.00569 -18.47752 -17.82121 -16.95747 -16.71302 -16.50942 -16.21639 -15.85168 -15.63469 -15.33606 -15.21425 -14.55887 -14.45550 -14.25903 -14.10440 -14.00428 -13.89076 -13.77230 -13.58853 -13.28979 -13.05508 -12.96755 -12.73310 -12.51598 -12.27112 -12.17069 -12.03442 -11.93157 -11.60238 -11.47593 -11.11604 -10.80832 -10.76104 -10.30483 -10.02962 -8.97070 -8.73390 -7.87568 -5.27607 0.09558 0.30846 0.58749 1.46222 1.47941 1.57236 1.99568 2.15280 2.15516 2.49670 2.77477 3.29308 3.60999 3.64795 3.66621 3.85254 3.88808 3.93817 4.00771 4.04940 4.23182 4.36490 4.43520 4.52390 4.55581 4.63804 4.79013 4.81330 4.82757 4.86401 4.93700 4.99441 5.08477 5.11104 5.26387 5.34368 5.35567 5.38677 5.40586 5.54894 5.57686 5.69284 5.83843 6.14516 6.39873 6.46697 7.04214 7.07281 7.69484 8.33958 9.21169 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.024457 B = 0.002353 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.579400 B =11896.389379 C =12592.523679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.197 4.197 3 C -0.114 4.114 4 C 0.541 3.459 5 O -0.570 6.570 6 N -0.654 5.654 7 C 0.096 3.904 8 C -0.088 4.088 9 C -0.143 4.143 10 C 0.105 3.895 11 O -0.313 6.313 12 C 0.084 3.916 13 H 0.096 0.904 14 C -0.123 4.123 15 C 0.180 3.820 16 N -0.621 5.621 17 C -0.247 4.247 18 H 0.082 0.918 19 C -0.063 4.063 20 N -0.948 5.948 21 Si 0.982 3.018 22 H -0.284 1.284 23 H -0.294 1.294 24 H -0.268 1.268 25 C 0.117 3.883 26 C -0.193 4.193 27 C -0.094 4.094 28 H 0.151 0.849 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.425 0.575 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.012 0.988 39 H 0.031 0.969 40 H 0.250 0.750 41 H 0.018 0.982 42 H 0.051 0.949 43 H 0.137 0.863 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.133 22.835 7.996 29.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.200 4.200 3 C -0.171 4.171 4 C 0.332 3.668 5 O -0.450 6.450 6 N -0.301 5.301 7 C 0.002 3.998 8 C -0.108 4.108 9 C -0.162 4.162 10 C 0.060 3.940 11 O -0.226 6.226 12 C 0.027 3.973 13 H 0.114 0.886 14 C -0.161 4.161 15 C 0.055 3.945 16 N -0.349 5.349 17 C -0.376 4.376 18 H 0.100 0.900 19 C -0.257 4.257 20 N -0.596 5.596 21 Si 0.810 3.190 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.193 1.193 25 C -0.009 4.009 26 C -0.212 4.212 27 C -0.114 4.114 28 H 0.169 0.831 29 H 0.116 0.884 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.267 0.733 34 H 0.150 0.850 35 H 0.157 0.843 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.030 0.970 39 H 0.050 0.950 40 H 0.059 0.941 41 H 0.036 0.964 42 H 0.069 0.931 43 H 0.155 0.845 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -17.461 21.882 8.010 29.118 hybrid contribution 1.023 -0.349 -0.993 1.468 sum -16.437 21.533 7.017 27.984 Atomic orbital electron populations 1.24877 0.94408 1.04325 0.89010 1.21683 0.96150 0.93532 1.08588 1.20889 0.99488 0.92249 1.04437 1.19270 0.81980 0.90592 0.74916 1.90810 1.68863 1.34745 1.50613 1.43370 1.06247 1.08351 1.72164 1.17674 0.94170 0.88315 0.99600 1.20902 0.99753 0.92389 0.97742 1.20424 0.93814 0.98968 1.02993 1.19291 0.92890 0.85575 0.96290 1.86093 1.30627 1.32436 1.73421 1.23502 0.81125 1.00094 0.92547 0.88639 1.22844 0.96818 0.97914 0.98495 1.21015 0.92564 0.98174 0.82758 1.44627 1.14939 1.72333 1.02983 1.19441 1.03928 1.29209 0.85029 0.89979 1.25712 0.99408 0.99133 1.01420 1.70151 1.20849 1.37589 1.31030 0.85013 0.78404 0.76656 0.78958 1.21062 1.22048 1.19297 1.22022 0.87866 0.96195 0.94823 1.21308 1.02678 0.94129 1.03129 1.20908 0.94213 0.97927 0.98382 0.83102 0.88387 0.91256 0.89338 0.89279 0.73330 0.84958 0.84322 0.88566 0.90622 0.96985 0.95041 0.94119 0.96378 0.93093 0.84544 0.82497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.92 13.96 66.66 0.93 0.01 16 2 C -0.20 -2.42 6.00 -18.71 -0.11 -2.53 16 3 C -0.11 -0.54 10.01 71.23 0.71 0.17 16 4 C 0.54 11.09 7.48 86.56 0.65 11.74 16 5 O -0.57 -16.70 13.98 -4.15 -0.06 -16.76 16 6 N -0.65 -11.37 5.30 -306.67 -1.62 -12.99 16 7 C 0.10 2.24 6.26 38.13 0.24 2.48 16 8 C -0.09 -2.34 8.65 22.39 0.19 -2.15 16 9 C -0.14 -4.05 9.98 22.35 0.22 -3.82 16 10 C 0.11 3.23 6.68 22.50 0.15 3.38 16 11 O -0.31 -10.80 9.95 -93.21 -0.93 -11.73 16 12 C 0.08 3.05 2.81 31.99 0.09 3.14 16 13 H 0.10 3.19 6.24 -2.39 -0.01 3.17 16 14 C -0.12 -4.65 6.69 31.78 0.21 -4.43 16 15 C 0.18 8.92 5.43 86.73 0.47 9.39 16 16 N -0.62 -32.58 3.39 -691.98 -2.35 -34.93 16 17 C -0.25 -14.02 10.26 84.04 0.86 -13.15 16 18 H 0.08 4.46 7.84 -2.91 -0.02 4.43 16 19 C -0.06 -3.61 5.45 84.86 0.46 -3.15 16 20 N -0.95 -56.94 10.49 21.65 0.23 -56.72 16 21 Si 0.98 45.68 29.56 68.60 2.03 47.71 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 C 0.12 5.05 6.85 86.85 0.59 5.65 16 26 C -0.19 -5.29 8.93 22.35 0.20 -5.09 16 27 C -0.09 -2.10 9.96 22.38 0.22 -1.88 16 28 H 0.15 0.49 8.06 -2.92 -0.02 0.46 16 29 H 0.10 1.41 7.49 -2.91 -0.02 1.39 16 30 H 0.07 0.21 5.85 -2.39 -0.01 0.20 16 31 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.09 0.21 8.14 -2.38 -0.02 0.19 16 33 H 0.43 4.17 6.56 -92.70 -0.61 3.56 16 34 H 0.13 3.59 6.49 -2.91 -0.02 3.57 16 35 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 36 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 37 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 38 H 0.01 0.64 7.94 -2.38 -0.02 0.62 16 39 H 0.03 1.77 6.97 -2.39 -0.02 1.75 16 40 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 41 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.05 2.09 7.79 -2.38 -0.02 2.07 16 43 H 0.14 3.77 5.63 -2.91 -0.02 3.75 16 44 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -74.00 361.36 3.81 -70.19 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.41 Total: 15.45 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 6.10 Total: -0.23 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -3.75 Total: -104.64 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.99 Total: -28.48 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -74.00 3.81 -70.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231318367.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.051 kcal (2) G-P(sol) polarization free energy of solvation -73.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds