Wall clock time and date at job start Tue Mar 31 2020 10:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47350 * 2 1 4 4 C 1.53006 * 109.46818 * 240.00172 * 2 1 3 5 5 C 1.52996 * 109.47287 * 120.00360 * 2 1 3 6 6 C 1.50702 * 109.47074 * 59.99665 * 5 2 1 7 7 N 1.30281 * 126.28068 * 90.00216 * 6 5 2 8 8 N 1.28673 * 109.37280 * 179.73033 * 7 6 5 9 9 C 1.30267 * 109.38661 * 0.44204 * 8 7 6 10 10 C 1.50697 * 126.28384 * 179.82501 * 9 8 7 11 11 C 1.50703 * 109.47047 * 89.69036 * 10 9 8 12 12 C 1.38306 * 119.92975 * 270.29820 * 11 10 9 13 13 C 1.38104 * 120.06267 * 180.29756 * 12 11 10 14 14 C 1.38874 * 119.93265 * 359.43007 * 13 12 11 15 15 O 1.35749 * 120.06890 * 180.29770 * 14 13 12 16 16 C 1.34834 * 117.00013 * 354.46142 * 15 14 13 17 17 H 1.07996 * 120.00021 * 5.05939 * 16 15 14 18 18 C 1.38654 * 119.99707 * 185.05824 * 16 15 14 19 19 N 1.31550 * 120.00182 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99577 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47118 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47416 * 119.99910 * 20 18 16 23 23 H 1.48499 * 109.47261 * 240.00285 * 20 18 16 24 24 C 1.38882 * 119.86301 * 0.27303 * 14 13 12 25 25 C 1.38094 * 119.92975 * 0.02562 * 24 14 13 26 26 O 1.34364 * 107.43746 * 359.56632 * 9 8 7 27 27 H 1.09008 * 109.46970 * 300.00118 * 1 2 3 28 28 H 1.09004 * 109.47580 * 59.99735 * 1 2 3 29 29 H 1.09002 * 109.47491 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47408 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47440 * 300.00328 * 3 2 1 32 32 H 1.09003 * 109.46923 * 60.00405 * 3 2 1 33 33 H 1.09002 * 109.46809 * 300.00074 * 4 2 1 34 34 H 1.09004 * 109.46988 * 60.00274 * 4 2 1 35 35 H 1.08997 * 109.46921 * 179.97438 * 4 2 1 36 36 H 1.09003 * 109.47175 * 299.99711 * 5 2 1 37 37 H 1.09003 * 109.47386 * 179.97438 * 5 2 1 38 38 H 1.09007 * 109.47286 * 329.69256 * 10 9 8 39 39 H 1.08998 * 109.47397 * 209.69299 * 10 9 8 40 40 H 1.07990 * 119.96779 * 0.02562 * 12 11 10 41 41 H 1.08000 * 120.02708 * 179.69965 * 13 12 11 42 42 H 0.97006 * 119.99724 * 179.97438 * 19 18 16 43 43 H 1.08005 * 120.03486 * 180.02562 * 24 14 13 44 44 H 1.08006 * 119.96521 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2491 6 6 1.5376 -2.1421 1.2491 7 7 2.1381 -3.1721 0.7239 8 7 1.4248 -4.2257 0.9160 9 6 0.3408 -3.9022 1.5618 10 6 -0.7612 -4.8408 1.9810 11 6 -0.4587 -5.3905 3.3512 12 6 0.2759 -6.5552 3.4807 13 6 0.5495 -7.0647 4.7348 14 6 0.0962 -6.4001 5.8668 15 8 0.3687 -6.8953 7.1010 16 6 0.9834 -8.0941 7.1577 17 1 1.3095 -8.5772 6.2485 18 6 1.1968 -8.7065 8.3832 19 7 0.8000 -8.1177 9.4907 20 14 2.0490 -10.3669 8.4617 21 1 2.3953 -10.8110 7.0876 22 1 3.2888 -10.2493 9.2704 23 1 1.1409 -11.3602 9.0893 24 6 -0.6360 -5.2276 5.7336 25 6 -0.9115 -4.7264 4.4766 26 8 0.3881 -2.5791 1.7907 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6765 -1.7489 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.1299 -0.7209 -1.2496 36 1 1.6767 -0.2075 2.1392 37 1 3.1300 -0.7217 1.2489 38 1 -0.8304 -5.6618 1.2673 39 1 -1.7079 -4.3011 2.0069 40 1 0.6322 -7.0689 2.6002 41 1 1.1191 -7.9768 4.8351 42 1 0.9490 -8.5464 10.3480 43 1 -0.9895 -4.7082 6.6121 44 1 -1.4806 -3.8143 4.3723 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322324682.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:10 Heat of formation + Delta-G solvation = 13.178812 kcal Electronic energy + Delta-G solvation = -25460.765815 eV Core-core repulsion = 21766.303139 eV Total energy + Delta-G solvation = -3694.462676 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.12799 -39.15763 -38.13575 -36.89546 -36.02332 -33.32920 -32.25586 -30.68474 -30.25859 -27.95906 -27.66594 -27.58267 -26.19192 -25.15315 -22.82157 -22.44575 -22.00250 -20.58982 -19.38365 -18.07088 -17.44543 -17.02569 -16.90529 -15.46821 -15.21773 -15.04855 -14.74747 -14.67666 -14.52975 -14.38264 -13.69071 -13.62536 -13.57366 -13.02590 -12.88627 -12.76587 -12.49721 -12.37798 -12.10491 -12.05817 -11.93386 -11.75006 -11.65351 -11.43135 -11.35295 -11.19504 -11.11814 -11.02871 -10.91273 -10.76863 -10.67246 -10.46500 -9.41001 -9.31665 -8.90502 -8.27924 -7.31474 -6.52347 -4.10858 1.24553 2.01091 2.14272 2.45024 2.53527 3.09248 3.11015 3.16696 3.83520 3.91633 4.28085 4.29487 4.42656 4.55131 4.63626 4.87753 5.00583 5.02142 5.14251 5.18028 5.21821 5.25463 5.30972 5.40503 5.42937 5.47890 5.51136 5.55202 5.57367 5.63631 5.69637 5.73573 5.75888 5.80654 5.84177 5.96511 6.03609 6.12875 6.32531 6.59125 6.80666 6.96339 7.12812 7.26593 7.35661 7.71193 7.92765 8.43836 8.93256 9.61122 10.65277 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.025657 B = 0.002385 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.062794 B =11736.936828 C =11761.603772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.067 4.067 3 C -0.139 4.139 4 C -0.144 4.144 5 C -0.016 4.016 6 C 0.157 3.843 7 N -0.286 5.286 8 N -0.293 5.293 9 C 0.183 3.817 10 C 0.035 3.965 11 C -0.204 4.204 12 C -0.048 4.048 13 C -0.235 4.235 14 C 0.160 3.840 15 O -0.173 6.173 16 C -0.393 4.393 17 H 0.094 0.906 18 C 0.040 3.960 19 N -0.860 5.860 20 Si 0.942 3.058 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.194 4.194 25 C -0.059 4.059 26 O -0.223 6.223 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.130 0.870 42 H 0.271 0.729 43 H 0.119 0.881 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.400 15.219 -17.702 23.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.068 4.068 3 C -0.197 4.197 4 C -0.201 4.201 5 C -0.054 4.054 6 C -0.054 4.054 7 N -0.132 5.132 8 N -0.139 5.139 9 C -0.027 4.027 10 C -0.004 4.004 11 C -0.206 4.206 12 C -0.066 4.066 13 C -0.254 4.254 14 C 0.105 3.895 15 O -0.076 6.076 16 C -0.469 4.469 17 H 0.112 0.888 18 C -0.165 4.165 19 N -0.494 5.494 20 Si 0.767 3.233 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.200 1.200 24 C -0.214 4.214 25 C -0.077 4.077 26 O -0.102 6.102 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.114 0.886 40 H 0.130 0.870 41 H 0.147 0.853 42 H 0.081 0.919 43 H 0.137 0.863 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.537 14.527 -17.821 22.998 hybrid contribution -0.342 -0.234 0.755 0.861 sum -0.879 14.292 -17.066 22.278 Atomic orbital electron populations 1.21941 0.94024 1.02004 1.02246 1.20590 0.96225 0.95707 0.94231 1.21840 1.01366 0.94103 1.02360 1.21927 1.01566 1.00485 0.96145 1.20346 1.01918 0.83005 1.00154 1.27709 0.82845 0.99616 0.95194 1.74352 1.24800 0.94762 1.19311 1.74377 1.02184 1.20767 1.16616 1.28344 0.98879 0.79779 0.95728 1.18930 0.91172 0.94005 0.96249 1.18838 1.09896 0.99786 0.92080 1.20654 0.94959 0.94321 0.96666 1.21162 1.08396 1.03919 0.91968 1.19441 0.91594 0.92487 0.85933 1.83975 1.66839 1.34364 1.22394 1.21422 1.36706 0.93904 0.94826 0.88826 1.25325 0.97327 0.99705 0.94141 1.70047 1.43236 1.38173 0.97938 0.85623 0.78734 0.79983 0.78983 1.18981 1.20068 1.20033 1.20176 1.05820 0.98109 0.97269 1.20496 0.98027 0.97796 0.91415 1.84793 1.38985 1.24698 1.61763 0.92107 0.92117 0.92937 0.92088 0.91990 0.92190 0.92333 0.92483 0.91977 0.88536 0.87278 0.87125 0.88582 0.86958 0.85283 0.91936 0.86316 0.86961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.22 37.16 0.31 -0.81 16 2 C -0.07 -0.49 0.80 -154.51 -0.12 -0.62 16 3 C -0.14 -0.76 8.47 37.16 0.31 -0.44 16 4 C -0.14 -1.20 8.20 37.16 0.30 -0.90 16 5 C -0.02 -0.14 4.91 -27.88 -0.14 -0.27 16 6 C 0.16 2.06 5.73 -12.94 -0.07 1.99 16 7 N -0.29 -4.50 11.46 32.55 0.37 -4.12 16 8 N -0.29 -4.93 12.22 32.55 0.40 -4.53 16 9 C 0.18 2.73 7.71 -12.94 -0.10 2.63 16 10 C 0.03 0.45 5.97 -29.04 -0.17 0.28 16 11 C -0.20 -3.39 5.12 -104.57 -0.54 -3.92 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 13 C -0.24 -5.10 9.17 -39.40 -0.36 -5.46 16 14 C 0.16 3.83 6.65 -39.11 -0.26 3.57 16 15 O -0.17 -4.90 9.76 0.04 0.00 -4.90 16 16 C -0.39 -10.88 9.49 30.89 0.29 -10.59 16 17 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -24.96 13.67 55.48 0.76 -24.21 16 20 Si 0.94 20.39 29.55 -169.99 -5.02 15.37 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 C -0.19 -4.03 9.99 -39.40 -0.39 -4.43 16 25 C -0.06 -1.02 9.69 -39.61 -0.38 -1.40 16 26 O -0.22 -3.14 10.25 5.36 0.05 -3.09 16 27 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.50 6.74 -51.93 -0.35 0.15 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.63 6.67 -51.93 -0.35 0.28 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.11 1.24 8.09 -51.93 -0.42 0.82 16 39 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 40 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.13 2.81 5.64 -52.49 -0.30 2.52 16 42 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.12 2.37 8.06 -52.48 -0.42 1.94 16 44 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 369.71 15.07 5.57 5.57 Total: -1.00 -32.30 369.71 -5.98 -38.28 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -6.31 Total: 2.26 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -1.80 Total: -20.64 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 1.53 Total: -32.86 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.06 Total: -7.98 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.30 -5.98 -38.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322324682.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.458 kcal (2) G-P(sol) polarization free energy of solvation -32.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds