Wall clock time and date at job start Tue Mar 31 2020 10:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47350 * 2 1 4 4 C 1.53006 * 109.46818 * 240.00172 * 2 1 3 5 5 C 1.52996 * 109.47287 * 120.00360 * 2 1 3 6 6 C 1.50702 * 109.47074 * 59.99665 * 5 2 1 7 7 N 1.30281 * 126.28068 * 90.00216 * 6 5 2 8 8 N 1.28673 * 109.37280 * 179.73033 * 7 6 5 9 9 C 1.30267 * 109.38661 * 0.44204 * 8 7 6 10 10 C 1.50697 * 126.28384 * 179.82501 * 9 8 7 11 11 C 1.50703 * 109.47047 * 89.69036 * 10 9 8 12 12 C 1.38306 * 119.92975 * 270.29820 * 11 10 9 13 13 C 1.38104 * 120.06267 * 180.29756 * 12 11 10 14 14 C 1.38874 * 119.93265 * 359.43007 * 13 12 11 15 15 O 1.35749 * 120.06890 * 180.29770 * 14 13 12 16 16 C 1.34834 * 117.00013 * 354.46142 * 15 14 13 17 17 H 1.07996 * 120.00021 * 5.05939 * 16 15 14 18 18 C 1.38654 * 119.99707 * 185.05824 * 16 15 14 19 19 N 1.31550 * 120.00182 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99577 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47118 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47416 * 119.99910 * 20 18 16 23 23 H 1.48499 * 109.47261 * 240.00285 * 20 18 16 24 24 C 1.38882 * 119.86301 * 0.27303 * 14 13 12 25 25 C 1.38094 * 119.92975 * 0.02562 * 24 14 13 26 26 O 1.34364 * 107.43746 * 359.56632 * 9 8 7 27 27 H 1.09008 * 109.46970 * 300.00118 * 1 2 3 28 28 H 1.09004 * 109.47580 * 59.99735 * 1 2 3 29 29 H 1.09002 * 109.47491 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47408 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47440 * 300.00328 * 3 2 1 32 32 H 1.09003 * 109.46923 * 60.00405 * 3 2 1 33 33 H 1.09002 * 109.46809 * 300.00074 * 4 2 1 34 34 H 1.09004 * 109.46988 * 60.00274 * 4 2 1 35 35 H 1.08997 * 109.46921 * 179.97438 * 4 2 1 36 36 H 1.09003 * 109.47175 * 299.99711 * 5 2 1 37 37 H 1.09003 * 109.47386 * 179.97438 * 5 2 1 38 38 H 1.09007 * 109.47286 * 329.69256 * 10 9 8 39 39 H 1.08998 * 109.47397 * 209.69299 * 10 9 8 40 40 H 1.07990 * 119.96779 * 0.02562 * 12 11 10 41 41 H 1.08000 * 120.02708 * 179.69965 * 13 12 11 42 42 H 0.97006 * 119.99724 * 179.97438 * 19 18 16 43 43 H 1.08005 * 120.03486 * 180.02562 * 24 14 13 44 44 H 1.08006 * 119.96521 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2491 6 6 1.5376 -2.1421 1.2491 7 7 2.1381 -3.1721 0.7239 8 7 1.4248 -4.2257 0.9160 9 6 0.3408 -3.9022 1.5618 10 6 -0.7612 -4.8408 1.9810 11 6 -0.4587 -5.3905 3.3512 12 6 0.2759 -6.5552 3.4807 13 6 0.5495 -7.0647 4.7348 14 6 0.0962 -6.4001 5.8668 15 8 0.3687 -6.8953 7.1010 16 6 0.9834 -8.0941 7.1577 17 1 1.3095 -8.5772 6.2485 18 6 1.1968 -8.7065 8.3832 19 7 0.8000 -8.1177 9.4907 20 14 2.0490 -10.3669 8.4617 21 1 2.3953 -10.8110 7.0876 22 1 3.2888 -10.2493 9.2704 23 1 1.1409 -11.3602 9.0893 24 6 -0.6360 -5.2276 5.7336 25 6 -0.9115 -4.7264 4.4766 26 8 0.3881 -2.5791 1.7907 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6765 -1.7489 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.1299 -0.7209 -1.2496 36 1 1.6767 -0.2075 2.1392 37 1 3.1300 -0.7217 1.2489 38 1 -0.8304 -5.6618 1.2673 39 1 -1.7079 -4.3011 2.0069 40 1 0.6322 -7.0689 2.6002 41 1 1.1191 -7.9768 4.8351 42 1 0.9490 -8.5464 10.3480 43 1 -0.9895 -4.7082 6.6121 44 1 -1.4806 -3.8143 4.3723 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322324682.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:09 Heat of formation + Delta-G solvation = -9.087458 kcal Electronic energy + Delta-G solvation = -25461.731353 eV Core-core repulsion = 21766.303139 eV Total energy + Delta-G solvation = -3695.428214 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.22727 -40.85768 -38.82999 -38.51899 -37.14674 -34.75857 -34.02285 -31.89478 -31.78609 -29.09394 -28.24989 -28.16336 -27.65659 -26.81330 -23.97820 -23.69556 -23.46877 -22.10315 -20.03013 -19.89604 -18.93848 -18.44279 -17.99245 -16.56311 -16.50936 -16.22284 -16.10739 -15.98555 -15.55092 -15.48324 -15.31776 -15.13130 -14.55177 -14.35653 -14.22701 -13.70006 -13.67836 -13.38543 -13.16025 -13.05622 -12.95537 -12.83773 -12.71332 -12.64100 -12.52433 -12.48664 -12.36095 -12.12335 -12.00536 -11.90060 -11.75542 -11.64081 -11.23064 -10.84581 -10.41940 -9.85248 -9.03473 -8.51343 -6.19561 0.14968 0.53470 0.55318 1.33646 1.34775 1.39391 1.43210 1.51731 2.14876 2.69281 2.93660 3.14277 3.44421 3.47311 3.68075 3.72970 3.88171 3.95851 3.98064 4.10475 4.15083 4.37862 4.41059 4.46738 4.50279 4.56647 4.61004 4.72496 4.76427 4.77884 4.78873 4.84412 4.89126 5.01531 5.02463 5.05463 5.10891 5.16815 5.22722 5.28912 5.39256 5.46866 5.48653 5.65796 5.67949 5.98593 6.12696 6.93474 7.32359 7.71932 8.71704 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.025657 B = 0.002385 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.062794 B =11736.936828 C =11761.603772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.061 4.061 3 C -0.135 4.135 4 C -0.142 4.142 5 C -0.021 4.021 6 C 0.173 3.827 7 N -0.320 5.320 8 N -0.323 5.323 9 C 0.178 3.822 10 C 0.038 3.962 11 C -0.175 4.175 12 C -0.050 4.050 13 C -0.246 4.246 14 C 0.120 3.880 15 O -0.228 6.228 16 C -0.415 4.415 17 H 0.101 0.899 18 C -0.021 4.021 19 N -0.918 5.918 20 Si 1.018 2.982 21 H -0.253 1.253 22 H -0.268 1.268 23 H -0.266 1.266 24 C -0.205 4.205 25 C -0.049 4.049 26 O -0.225 6.225 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.030 0.970 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.030 0.970 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.118 0.882 42 H 0.274 0.726 43 H 0.118 0.882 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.868 17.002 -20.392 26.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.062 4.062 3 C -0.192 4.192 4 C -0.200 4.200 5 C -0.059 4.059 6 C -0.038 4.038 7 N -0.165 5.165 8 N -0.168 5.168 9 C -0.034 4.034 10 C 0.000 4.000 11 C -0.177 4.177 12 C -0.068 4.068 13 C -0.266 4.266 14 C 0.069 3.931 15 O -0.134 6.134 16 C -0.491 4.491 17 H 0.118 0.882 18 C -0.219 4.219 19 N -0.556 5.556 20 Si 0.837 3.163 21 H -0.176 1.176 22 H -0.193 1.193 23 H -0.191 1.191 24 C -0.224 4.224 25 C -0.067 4.067 26 O -0.105 6.105 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.156 0.844 41 H 0.136 0.864 42 H 0.083 0.917 43 H 0.136 0.864 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.007 16.335 -20.581 26.295 hybrid contribution -0.291 -0.496 1.235 1.362 sum -1.298 15.839 -19.346 25.037 Atomic orbital electron populations 1.21944 0.94100 1.00819 1.03248 1.20583 0.96091 0.96682 0.92826 1.21816 1.01770 0.92392 1.03265 1.21914 1.01627 0.99058 0.97367 1.20727 1.02599 0.80831 1.01777 1.28540 0.81809 1.00572 0.92924 1.74305 1.25773 0.95365 1.21083 1.74306 1.03081 1.21804 1.17621 1.28513 0.98738 0.80345 0.95785 1.19118 0.92104 0.94873 0.93915 1.19304 1.06235 0.97997 0.94123 1.20984 0.94730 0.95110 0.96016 1.21245 1.08637 1.03796 0.92878 1.20009 0.93395 0.94055 0.85617 1.83941 1.69504 1.35295 1.24686 1.21859 1.37195 0.94455 0.95556 0.88167 1.26584 0.98017 1.03881 0.93414 1.70179 1.46143 1.40562 0.98675 0.84536 0.77578 0.74601 0.79547 1.17635 1.19328 1.19069 1.20471 1.05540 0.97291 0.99109 1.20957 0.97134 0.98732 0.89891 1.84808 1.39376 1.24418 1.61877 0.91224 0.91081 0.95102 0.91502 0.91219 0.91198 0.95125 0.91320 0.91867 0.86617 0.86272 0.84872 0.84788 0.84437 0.86405 0.91714 0.86390 0.82717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.22 71.98 0.59 -1.24 16 2 C -0.06 -0.74 0.80 -52.18 -0.04 -0.78 16 3 C -0.14 -1.01 8.47 71.98 0.61 -0.40 16 4 C -0.14 -2.13 8.20 71.98 0.59 -1.54 16 5 C -0.02 -0.32 4.91 29.85 0.15 -0.17 16 6 C 0.17 4.18 5.73 88.34 0.51 4.69 16 7 N -0.32 -9.69 11.46 -165.49 -1.90 -11.59 16 8 N -0.32 -10.29 12.22 -165.51 -2.02 -12.32 16 9 C 0.18 4.78 7.71 88.34 0.68 5.46 16 10 C 0.04 0.81 5.97 29.10 0.17 0.98 16 11 C -0.17 -5.23 5.12 -19.83 -0.10 -5.33 16 12 C -0.05 -1.76 9.69 22.25 0.22 -1.54 16 13 C -0.25 -10.87 9.17 22.39 0.21 -10.66 16 14 C 0.12 5.97 6.65 22.58 0.15 6.12 16 15 O -0.23 -13.74 9.76 -22.77 -0.22 -13.97 16 16 C -0.41 -24.29 9.49 67.92 0.64 -23.64 16 17 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16 18 C -0.02 -1.20 5.49 84.83 0.47 -0.74 16 19 N -0.92 -56.26 13.67 21.61 0.30 -55.97 16 20 Si 1.02 43.13 29.55 68.60 2.03 45.16 16 21 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 24 C -0.20 -8.51 9.99 22.39 0.22 -8.28 16 25 C -0.05 -1.56 9.69 22.25 0.22 -1.35 16 26 O -0.23 -5.71 10.25 -3.73 -0.04 -5.74 16 27 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.03 0.52 6.74 -2.39 -0.02 0.51 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.03 0.63 6.67 -2.39 -0.02 0.61 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.13 2.35 8.09 -2.38 -0.02 2.33 16 39 H 0.13 1.96 8.08 -2.39 -0.02 1.94 16 40 H 0.14 4.10 8.06 -2.92 -0.02 4.08 16 41 H 0.12 5.35 5.64 -2.91 -0.02 5.34 16 42 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 43 H 0.12 4.81 8.06 -2.91 -0.02 4.78 16 44 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -76.35 369.71 4.42 -71.93 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 1.00 Total: 20.91 kcal Atomic # 6 Polarization: -43.69 SS G_CDS: 5.28 Total: -38.41 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -3.62 Total: -79.87 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.26 Total: -19.71 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -76.35 4.42 -71.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322324682.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.838 kcal (2) G-P(sol) polarization free energy of solvation -76.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds