Wall clock time and date at job start Tue Mar 31 2020 11:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47053 * 2 1 4 4 C 1.50702 * 109.47006 * 240.00530 * 2 1 3 5 5 H 1.08001 * 119.99469 * 241.34578 * 4 2 1 6 6 C 1.37874 * 120.00173 * 61.34470 * 4 2 1 7 7 N 1.31516 * 119.99852 * 193.97495 * 6 4 2 8 8 Si 1.86794 * 120.00161 * 13.98163 * 6 4 2 9 9 H 1.48502 * 109.47666 * 84.54570 * 8 6 4 10 10 H 1.48505 * 109.47046 * 204.54657 * 8 6 4 11 11 H 1.48504 * 109.46722 * 324.54459 * 8 6 4 12 12 C 1.52991 * 109.47220 * 120.00206 * 2 1 3 13 13 N 1.46496 * 109.47368 * 300.00004 * 12 2 1 14 14 C 1.34770 * 120.00451 * 179.97438 * 13 12 2 15 15 O 1.21282 * 120.00144 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00479 * 180.02562 * 14 13 12 17 17 C 1.50698 * 109.47583 * 179.97438 * 16 14 13 18 18 C 1.38302 * 119.81453 * 269.97982 * 17 16 14 19 19 C 1.38398 * 119.82326 * 180.02562 * 18 17 16 20 20 C 1.37673 * 119.91461 * 0.02562 * 19 18 17 21 21 C 1.38901 * 120.81010 * 359.97438 * 20 19 18 22 22 C 1.37943 * 119.80955 * 89.99677 * 17 16 14 23 23 N 1.39531 * 110.22727 * 179.97438 * 21 20 19 24 24 C 1.34372 * 112.24893 * 359.97438 * 23 21 20 25 25 O 1.21285 * 126.44414 * 180.02562 * 24 23 21 26 26 C 1.51137 * 132.84563 * 179.65849 * 20 19 18 27 27 H 1.08995 * 109.47284 * 309.36893 * 1 2 3 28 28 H 1.09005 * 109.46988 * 69.36591 * 1 2 3 29 29 H 1.08998 * 109.47057 * 189.36418 * 1 2 3 30 30 H 1.08998 * 109.47154 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47981 * 299.99997 * 3 2 1 32 32 H 1.09005 * 109.47141 * 60.00282 * 3 2 1 33 33 H 0.97000 * 119.99980 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47396 * 179.97438 * 12 2 1 35 35 H 1.09007 * 109.46880 * 59.99997 * 12 2 1 36 36 H 0.97007 * 120.00167 * 0.02562 * 13 12 2 37 37 H 1.09000 * 109.47193 * 59.99789 * 16 14 13 38 38 H 1.09007 * 109.47034 * 300.00153 * 16 14 13 39 39 H 1.07993 * 120.08542 * 359.97438 * 18 17 16 40 40 H 1.07996 * 120.03986 * 180.02562 * 19 18 17 41 41 H 1.07997 * 119.93600 * 359.97438 * 22 17 16 42 42 H 0.97001 * 123.88029 * 179.97438 * 23 21 20 43 43 H 1.09003 * 110.51308 * 298.93521 * 26 20 19 44 44 H 1.09000 * 110.50921 * 61.64803 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6352 -1.6009 -1.1316 6 6 1.7223 -0.2232 -2.4826 7 7 1.9158 -0.9724 -3.5460 8 14 1.0276 1.5008 -2.6684 9 1 2.1417 2.4819 -2.7083 10 1 0.2470 1.5867 -3.9288 11 1 0.1418 1.8043 -1.5158 12 6 2.0400 -0.7212 1.2491 13 7 1.5517 -0.0307 2.4453 14 6 1.8769 -0.4915 3.6694 15 8 2.5734 -1.4781 3.7807 16 6 1.3741 0.2185 4.8999 17 6 1.8755 -0.4926 6.1304 18 6 1.1241 -1.5092 6.6912 19 6 1.5841 -2.1620 7.8215 20 6 2.7868 -1.7971 8.3835 21 6 3.5506 -0.7777 7.8297 22 6 3.0812 -0.1255 6.6911 23 7 4.7179 -0.5921 8.5712 24 6 4.7978 -1.4359 9.6139 25 8 5.6986 -1.4972 10.4238 26 6 3.5495 -2.2922 9.5907 27 1 -0.3633 0.6518 0.7944 28 1 -0.3633 0.3622 -0.9618 29 1 -0.3633 -1.0140 0.1672 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6980 -0.6296 -4.4269 34 1 3.1300 -0.7217 1.2489 35 1 1.6766 -1.7490 1.2491 36 1 0.9937 0.7578 2.3564 37 1 0.2841 0.2185 4.8996 38 1 1.7374 1.2462 4.9004 39 1 0.1805 -1.7924 6.2488 40 1 1.0004 -2.9567 8.2621 41 1 3.6622 0.6693 6.2472 42 1 5.3942 0.0699 8.3585 43 1 2.9639 -2.1468 10.4985 44 1 3.8149 -3.3426 9.4703 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361854034.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:47 Heat of formation + Delta-G solvation = -29.199929 kcal Electronic energy + Delta-G solvation = -25491.711166 eV Core-core repulsion = 21795.410809 eV Total energy + Delta-G solvation = -3696.300356 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.68866 -39.71953 -38.57976 -36.87216 -36.01918 -33.37292 -33.11460 -31.58909 -30.48525 -29.88903 -27.01459 -26.43751 -25.46418 -24.65601 -23.04488 -21.82575 -21.18310 -20.05598 -19.20969 -18.02589 -16.99788 -16.92871 -16.30508 -16.14907 -15.99776 -15.48818 -15.20824 -14.95709 -14.74244 -14.34520 -14.01569 -13.66954 -13.36681 -13.28483 -13.07398 -12.92248 -12.74312 -12.57812 -12.30447 -12.20438 -12.08970 -11.98630 -11.30941 -11.22047 -11.02589 -10.52219 -10.48420 -10.36019 -10.21899 -10.11752 -9.65707 -9.18087 -8.95448 -8.73158 -8.59630 -8.48669 -8.26903 -6.18601 -4.16154 0.89856 1.06295 2.15632 2.68937 2.89365 3.19885 3.26676 3.34863 3.35312 3.75759 3.81339 4.10077 4.31406 4.48278 4.54181 4.84610 5.01554 5.03604 5.07285 5.11934 5.14572 5.19944 5.32173 5.52473 5.60731 5.73204 5.82869 5.99409 6.00877 6.10218 6.23546 6.29927 6.37761 6.42449 6.45570 6.47033 6.57669 6.63996 6.72836 6.75002 6.91194 7.17148 7.37891 7.63151 7.67797 7.86681 8.40189 8.54134 8.86855 9.45043 10.94517 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.031720 B = 0.002333 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.517797 B =11996.346406 C =12154.300444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.028 3.972 3 C -0.148 4.148 4 C -0.514 4.514 5 H 0.076 0.924 6 C 0.075 3.925 7 N -0.890 5.890 8 Si 0.886 3.114 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.143 3.857 13 N -0.723 5.723 14 C 0.506 3.494 15 O -0.539 6.539 16 C -0.107 4.107 17 C -0.024 4.024 18 C -0.121 4.121 19 C -0.065 4.065 20 C -0.146 4.146 21 C 0.138 3.862 22 C -0.121 4.121 23 N -0.659 5.659 24 C 0.529 3.471 25 O -0.510 6.510 26 C -0.113 4.113 27 H 0.022 0.978 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.029 0.971 33 H 0.265 0.735 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.396 0.604 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.125 0.875 42 H 0.413 0.587 43 H 0.122 0.878 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.801 3.913 23.329 23.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.027 3.973 3 C -0.205 4.205 4 C -0.552 4.552 5 H 0.094 0.906 6 C -0.128 4.128 7 N -0.527 5.527 8 Si 0.718 3.282 9 H -0.214 1.214 10 H -0.234 1.234 11 H -0.175 1.175 12 C 0.020 3.980 13 N -0.374 5.374 14 C 0.291 3.709 15 O -0.416 6.416 16 C -0.147 4.147 17 C -0.025 4.025 18 C -0.140 4.140 19 C -0.083 4.083 20 C -0.149 4.149 21 C 0.042 3.958 22 C -0.142 4.142 23 N -0.302 5.302 24 C 0.317 3.683 25 O -0.385 6.385 26 C -0.153 4.153 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.231 0.769 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.143 0.857 42 H 0.251 0.749 43 H 0.140 0.860 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.813 3.032 23.718 24.076 hybrid contribution -0.188 1.743 -0.699 1.887 sum -3.001 4.775 23.019 23.700 Atomic orbital electron populations 1.22296 0.97833 0.99834 0.99978 1.18719 0.92517 0.92236 0.93821 1.22362 1.01191 0.98336 0.98574 1.20717 1.34113 1.12352 0.87999 0.90570 1.24982 0.94683 0.97313 0.95798 1.69951 1.48098 1.35913 0.98742 0.87291 0.79323 0.85536 0.76015 1.21375 1.23391 1.17510 1.21499 0.98571 0.95816 0.82099 1.46318 1.53038 1.31946 1.06128 1.20342 0.81085 0.85021 0.84466 1.90727 1.37871 1.26191 1.86784 1.20747 1.02960 1.00263 0.90754 1.18989 0.93503 0.95675 0.94338 1.20936 1.00754 0.96187 0.96120 1.20193 0.93820 0.99040 0.95293 1.19748 0.96903 0.99411 0.98851 1.18011 0.86955 0.96988 0.93892 1.20153 0.96850 1.02223 0.94930 1.43726 1.21285 1.37319 1.27855 1.20634 0.87786 0.80404 0.79508 1.90817 1.38570 1.69438 1.39704 1.21036 0.94122 1.01611 0.98481 0.95917 0.92534 0.93394 0.92821 0.94034 0.95168 0.92527 0.92056 0.91898 0.76901 0.87672 0.87957 0.85240 0.85249 0.85678 0.74929 0.85989 0.85983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 7.53 37.16 0.28 -2.46 16 2 C 0.03 0.59 0.50 -155.66 -0.08 0.51 16 3 C -0.15 -2.85 7.52 37.16 0.28 -2.57 16 4 C -0.51 -13.48 8.62 -34.44 -0.30 -13.78 16 5 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 6 C 0.07 2.04 5.32 -17.82 -0.09 1.95 16 7 N -0.89 -26.26 13.96 55.43 0.77 -25.48 16 8 Si 0.89 20.57 22.79 -169.99 -3.87 16.70 16 9 H -0.29 -6.64 7.10 56.52 0.40 -6.24 16 10 H -0.31 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.25 -5.20 4.65 56.52 0.26 -4.94 16 12 C 0.14 2.71 4.49 -4.05 -0.02 2.69 16 13 N -0.72 -10.59 5.00 -60.30 -0.30 -10.89 16 14 C 0.51 7.19 7.82 -10.99 -0.09 7.10 16 15 O -0.54 -10.01 16.03 5.56 0.09 -9.92 16 16 C -0.11 -0.99 5.82 -29.04 -0.17 -1.16 16 17 C -0.02 -0.24 4.36 -104.71 -0.46 -0.70 16 18 C -0.12 -1.14 9.71 -39.50 -0.38 -1.52 16 19 C -0.07 -0.55 10.04 -39.73 -0.40 -0.95 16 20 C -0.15 -1.33 6.35 -104.37 -0.66 -1.99 16 21 C 0.14 1.37 7.11 -83.69 -0.60 0.77 16 22 C -0.12 -1.21 9.71 -39.27 -0.38 -1.59 16 23 N -0.66 -6.08 5.88 -9.70 -0.06 -6.14 16 24 C 0.53 5.48 8.71 -10.82 -0.09 5.38 16 25 O -0.51 -6.96 18.03 5.55 0.10 -6.86 16 26 C -0.11 -0.86 6.88 -28.48 -0.20 -1.06 16 27 H 0.02 0.35 7.13 -51.93 -0.37 -0.02 16 28 H 0.06 1.18 4.30 -51.93 -0.22 0.95 16 29 H 0.05 0.92 8.12 -51.93 -0.42 0.50 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.04 0.86 2.25 -51.93 -0.12 0.74 16 32 H 0.03 0.46 6.86 -51.93 -0.36 0.11 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 36 H 0.40 4.85 6.26 -40.82 -0.26 4.59 16 37 H 0.11 0.72 8.08 -51.93 -0.42 0.30 16 38 H 0.10 0.72 8.08 -51.92 -0.42 0.30 16 39 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.41 3.08 8.96 -40.82 -0.37 2.72 16 43 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 352.28 15.07 5.31 5.31 Total: -1.00 -33.84 352.28 -7.34 -41.18 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.02 Total: 5.48 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -3.35 Total: -9.38 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.41 Total: -42.51 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: 0.19 Total: -16.78 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -3.87 Total: 16.70 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.84 -7.34 -41.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361854034.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.982 kcal (2) G-P(sol) polarization free energy of solvation -33.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds