Wall clock time and date at job start Tue Mar 31 2020 11:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47053 * 2 1 4 4 C 1.50702 * 109.47006 * 240.00530 * 2 1 3 5 5 H 1.08001 * 119.99469 * 241.34578 * 4 2 1 6 6 C 1.37874 * 120.00173 * 61.34470 * 4 2 1 7 7 N 1.31516 * 119.99852 * 193.97495 * 6 4 2 8 8 Si 1.86794 * 120.00161 * 13.98163 * 6 4 2 9 9 H 1.48502 * 109.47666 * 84.54570 * 8 6 4 10 10 H 1.48505 * 109.47046 * 204.54657 * 8 6 4 11 11 H 1.48504 * 109.46722 * 324.54459 * 8 6 4 12 12 C 1.52991 * 109.47220 * 120.00206 * 2 1 3 13 13 N 1.46496 * 109.47368 * 300.00004 * 12 2 1 14 14 C 1.34770 * 120.00451 * 179.97438 * 13 12 2 15 15 O 1.21282 * 120.00144 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00479 * 180.02562 * 14 13 12 17 17 C 1.50698 * 109.47583 * 179.97438 * 16 14 13 18 18 C 1.38302 * 119.81453 * 269.97982 * 17 16 14 19 19 C 1.38398 * 119.82326 * 180.02562 * 18 17 16 20 20 C 1.37673 * 119.91461 * 0.02562 * 19 18 17 21 21 C 1.38901 * 120.81010 * 359.97438 * 20 19 18 22 22 C 1.37943 * 119.80955 * 89.99677 * 17 16 14 23 23 N 1.39531 * 110.22727 * 179.97438 * 21 20 19 24 24 C 1.34372 * 112.24893 * 359.97438 * 23 21 20 25 25 O 1.21285 * 126.44414 * 180.02562 * 24 23 21 26 26 C 1.51137 * 132.84563 * 179.65849 * 20 19 18 27 27 H 1.08995 * 109.47284 * 309.36893 * 1 2 3 28 28 H 1.09005 * 109.46988 * 69.36591 * 1 2 3 29 29 H 1.08998 * 109.47057 * 189.36418 * 1 2 3 30 30 H 1.08998 * 109.47154 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47981 * 299.99997 * 3 2 1 32 32 H 1.09005 * 109.47141 * 60.00282 * 3 2 1 33 33 H 0.97000 * 119.99980 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47396 * 179.97438 * 12 2 1 35 35 H 1.09007 * 109.46880 * 59.99997 * 12 2 1 36 36 H 0.97007 * 120.00167 * 0.02562 * 13 12 2 37 37 H 1.09000 * 109.47193 * 59.99789 * 16 14 13 38 38 H 1.09007 * 109.47034 * 300.00153 * 16 14 13 39 39 H 1.07993 * 120.08542 * 359.97438 * 18 17 16 40 40 H 1.07996 * 120.03986 * 180.02562 * 19 18 17 41 41 H 1.07997 * 119.93600 * 359.97438 * 22 17 16 42 42 H 0.97001 * 123.88029 * 179.97438 * 23 21 20 43 43 H 1.09003 * 110.51308 * 298.93521 * 26 20 19 44 44 H 1.09000 * 110.50921 * 61.64803 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6352 -1.6009 -1.1316 6 6 1.7223 -0.2232 -2.4826 7 7 1.9158 -0.9724 -3.5460 8 14 1.0276 1.5008 -2.6684 9 1 2.1417 2.4819 -2.7083 10 1 0.2470 1.5867 -3.9288 11 1 0.1418 1.8043 -1.5158 12 6 2.0400 -0.7212 1.2491 13 7 1.5517 -0.0307 2.4453 14 6 1.8769 -0.4915 3.6694 15 8 2.5734 -1.4781 3.7807 16 6 1.3741 0.2185 4.8999 17 6 1.8755 -0.4926 6.1304 18 6 1.1241 -1.5092 6.6912 19 6 1.5841 -2.1620 7.8215 20 6 2.7868 -1.7971 8.3835 21 6 3.5506 -0.7777 7.8297 22 6 3.0812 -0.1255 6.6911 23 7 4.7179 -0.5921 8.5712 24 6 4.7978 -1.4359 9.6139 25 8 5.6986 -1.4972 10.4238 26 6 3.5495 -2.2922 9.5907 27 1 -0.3633 0.6518 0.7944 28 1 -0.3633 0.3622 -0.9618 29 1 -0.3633 -1.0140 0.1672 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6980 -0.6296 -4.4269 34 1 3.1300 -0.7217 1.2489 35 1 1.6766 -1.7490 1.2491 36 1 0.9937 0.7578 2.3564 37 1 0.2841 0.2185 4.8996 38 1 1.7374 1.2462 4.9004 39 1 0.1805 -1.7924 6.2488 40 1 1.0004 -2.9567 8.2621 41 1 3.6622 0.6693 6.2472 42 1 5.3942 0.0699 8.3585 43 1 2.9639 -2.1468 10.4985 44 1 3.8149 -3.3426 9.4703 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361854034.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:47 Heat of formation + Delta-G solvation = -54.250503 kcal Electronic energy + Delta-G solvation = -25492.797440 eV Core-core repulsion = 21795.410809 eV Total energy + Delta-G solvation = -3697.386631 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.40566 -40.84802 -39.47870 -38.35835 -36.87460 -34.92937 -33.87495 -33.37230 -31.28844 -30.56372 -28.13406 -27.93812 -27.10343 -26.14317 -23.73267 -22.54276 -22.11304 -21.10401 -20.84823 -18.79474 -18.32426 -17.89683 -17.68761 -17.05622 -16.91996 -16.87678 -16.46373 -16.13854 -15.69057 -15.17378 -14.97846 -14.90049 -14.71248 -14.57535 -14.28672 -14.04060 -13.99593 -13.73316 -13.66049 -13.34121 -13.07934 -12.84046 -12.58192 -12.37945 -12.12794 -11.93219 -11.86701 -11.78454 -11.73052 -11.34094 -11.07139 -10.81451 -10.60278 -10.36440 -9.91691 -9.65238 -8.98797 -8.29239 -6.31037 0.18896 0.37641 1.37569 1.39155 1.40055 1.52545 1.80159 1.98981 2.36035 2.38506 2.89847 3.07340 3.12002 3.45323 3.76991 3.91697 4.06927 4.20542 4.23005 4.36417 4.38679 4.45419 4.49583 4.51754 4.60002 4.72329 4.79566 4.86805 4.89772 4.90745 4.97973 5.01809 5.10041 5.15950 5.22852 5.44126 5.48511 5.54772 5.60546 5.69476 5.74951 5.75534 5.83580 6.07286 6.31848 6.72233 6.77476 6.88815 7.33930 7.43999 8.88175 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.031720 B = 0.002333 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.517797 B =11996.346406 C =12154.300444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.027 3.973 3 C -0.147 4.147 4 C -0.519 4.519 5 H 0.024 0.976 6 C 0.013 3.987 7 N -0.949 5.949 8 Si 0.946 3.054 9 H -0.283 1.283 10 H -0.317 1.317 11 H -0.198 1.198 12 C 0.159 3.841 13 N -0.712 5.712 14 C 0.505 3.495 15 O -0.588 6.588 16 C -0.094 4.094 17 C -0.042 4.042 18 C -0.129 4.129 19 C -0.068 4.068 20 C -0.150 4.150 21 C 0.118 3.882 22 C -0.131 4.131 23 N -0.655 5.655 24 C 0.522 3.478 25 O -0.552 6.552 26 C -0.106 4.106 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.043 0.957 31 H 0.034 0.966 32 H 0.079 0.921 33 H 0.264 0.736 34 H 0.036 0.964 35 H 0.037 0.963 36 H 0.414 0.586 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.145 0.855 40 H 0.155 0.845 41 H 0.133 0.867 42 H 0.417 0.583 43 H 0.147 0.853 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.405 6.418 25.747 27.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.026 3.974 3 C -0.204 4.204 4 C -0.557 4.557 5 H 0.042 0.958 6 C -0.184 4.184 7 N -0.588 5.588 8 Si 0.775 3.225 9 H -0.211 1.211 10 H -0.247 1.247 11 H -0.122 1.122 12 C 0.035 3.965 13 N -0.365 5.365 14 C 0.293 3.707 15 O -0.468 6.468 16 C -0.133 4.133 17 C -0.044 4.044 18 C -0.148 4.148 19 C -0.086 4.086 20 C -0.152 4.152 21 C 0.022 3.978 22 C -0.152 4.152 23 N -0.297 5.297 24 C 0.312 3.688 25 O -0.430 6.430 26 C -0.145 4.145 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.252 0.748 37 H 0.157 0.843 38 H 0.150 0.850 39 H 0.163 0.837 40 H 0.173 0.827 41 H 0.151 0.849 42 H 0.256 0.744 43 H 0.165 0.835 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.455 5.579 26.166 27.304 hybrid contribution 0.693 0.814 -1.427 1.783 sum -4.762 6.393 24.739 25.992 Atomic orbital electron populations 1.22214 0.95828 1.00729 1.01017 1.18659 0.93947 0.93106 0.91721 1.22296 1.00849 0.96775 1.00485 1.21077 1.32800 1.11001 0.90799 0.95798 1.25917 0.95471 1.01801 0.95210 1.70127 1.50850 1.38403 0.99430 0.86319 0.79409 0.79642 0.77080 1.21071 1.24728 1.12159 1.20941 0.97021 0.94919 0.83657 1.46055 1.53251 1.32207 1.04958 1.21258 0.79740 0.84311 0.85359 1.90717 1.40036 1.28622 1.87452 1.20771 1.04813 1.00670 0.87064 1.19203 0.93782 0.96425 0.94947 1.21264 1.01360 0.95841 0.96315 1.20514 0.93702 0.99385 0.95017 1.20011 0.97087 0.99034 0.99102 1.18203 0.87314 0.97871 0.94432 1.20361 0.97157 1.02618 0.95055 1.43740 1.21364 1.37137 1.27494 1.21084 0.88109 0.80607 0.79017 1.90791 1.40237 1.70759 1.41230 1.21089 0.92738 1.01601 0.99029 0.90951 0.93831 0.94134 0.93769 0.94815 0.90190 0.92745 0.94510 0.94472 0.74837 0.84317 0.84976 0.83745 0.82694 0.84950 0.74409 0.83522 0.84567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 7.53 71.98 0.54 -4.40 16 2 C 0.03 1.08 0.50 -52.93 -0.03 1.05 16 3 C -0.15 -5.14 7.52 71.98 0.54 -4.60 16 4 C -0.52 -28.14 8.62 25.60 0.22 -27.92 16 5 H 0.02 1.49 7.99 -2.91 -0.02 1.46 16 6 C 0.01 0.73 5.32 84.65 0.45 1.18 16 7 N -0.95 -58.56 13.96 21.45 0.30 -58.27 16 8 Si 0.95 41.63 22.79 68.60 1.56 43.19 16 9 H -0.28 -12.26 7.10 99.48 0.71 -11.56 16 10 H -0.32 -14.55 7.11 99.48 0.71 -13.84 16 11 H -0.20 -7.13 4.65 99.48 0.46 -6.67 16 12 C 0.16 5.97 4.49 86.38 0.39 6.36 16 13 N -0.71 -18.56 5.00 -463.08 -2.32 -20.88 16 14 C 0.51 13.02 7.82 87.66 0.69 13.70 16 15 O -0.59 -21.45 16.03 -3.04 -0.05 -21.50 16 16 C -0.09 -1.33 5.82 29.10 0.17 -1.16 16 17 C -0.04 -0.74 4.36 -19.92 -0.09 -0.83 16 18 C -0.13 -2.04 9.71 22.32 0.22 -1.83 16 19 C -0.07 -0.97 10.04 22.17 0.22 -0.74 16 20 C -0.15 -2.41 6.35 -19.70 -0.13 -2.53 16 21 C 0.12 2.18 7.11 38.35 0.27 2.45 16 22 C -0.13 -2.39 9.71 22.47 0.22 -2.17 16 23 N -0.65 -11.71 5.88 -303.21 -1.78 -13.49 16 24 C 0.52 10.52 8.71 87.94 0.77 11.28 16 25 O -0.55 -15.16 18.03 -3.04 -0.05 -15.22 16 26 C -0.11 -1.41 6.88 29.46 0.20 -1.21 16 27 H 0.07 1.83 7.13 -2.39 -0.02 1.81 16 28 H 0.04 1.64 4.30 -2.38 -0.01 1.63 16 29 H 0.04 1.46 8.12 -2.39 -0.02 1.45 16 30 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.03 1.24 2.25 -2.39 -0.01 1.24 16 32 H 0.08 2.00 6.86 -2.38 -0.02 1.98 16 33 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 34 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.41 7.80 6.26 -92.70 -0.58 7.22 16 37 H 0.14 1.09 8.08 -2.39 -0.02 1.07 16 38 H 0.13 1.14 8.08 -2.38 -0.02 1.12 16 39 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 40 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 41 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 42 H 0.42 6.18 8.96 -92.71 -0.83 5.35 16 43 H 0.15 1.23 8.14 -2.39 -0.02 1.22 16 44 H 0.14 1.46 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -79.98 352.28 1.71 -78.27 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -0.60 Total: 19.24 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 4.66 Total: -11.35 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -3.80 Total: -92.64 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -0.10 Total: -36.72 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 1.56 Total: 43.19 kcal Total: -79.98 1.71 -78.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361854034.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.020 kcal (2) G-P(sol) polarization free energy of solvation -79.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds