Wall clock time and date at job start Tue Mar 31 2020 11:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46519 * 2 1 4 4 C 1.50696 * 109.47398 * 240.00549 * 2 1 3 5 5 H 1.08003 * 120.00036 * 241.35842 * 4 2 1 6 6 C 1.37881 * 120.00092 * 61.35549 * 4 2 1 7 7 N 1.31521 * 119.99436 * 193.96444 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 13.96355 * 6 4 2 9 9 H 1.48501 * 109.46809 * 84.55955 * 8 6 4 10 10 H 1.48501 * 109.47026 * 204.55488 * 8 6 4 11 11 H 1.48498 * 109.47080 * 324.55623 * 8 6 4 12 12 C 1.52993 * 109.47207 * 119.99878 * 2 1 3 13 13 N 1.46903 * 109.47497 * 300.00437 * 12 2 1 14 14 C 1.46897 * 111.00172 * 179.97438 * 13 12 2 15 15 C 1.50699 * 109.47165 * 180.02562 * 14 13 12 16 16 C 1.41545 * 126.14243 * 89.99928 * 15 14 13 17 17 C 1.40125 * 133.35619 * 359.71620 * 16 15 14 18 18 C 1.36435 * 119.82556 * 179.86387 * 17 16 15 19 19 C 1.38950 * 120.61704 * 0.45535 * 18 17 16 20 20 C 1.37670 * 120.64880 * 359.76559 * 19 18 17 21 21 C 1.39226 * 119.81574 * 0.02562 * 20 19 18 22 22 N 1.37470 * 133.17210 * 179.97438 * 21 20 19 23 23 H 0.96996 * 125.60883 * 0.04833 * 22 21 20 24 24 C 1.35952 * 126.13919 * 269.99832 * 15 14 13 25 25 C 1.46901 * 125.44276 * 0.02562 * 24 15 14 26 26 O 1.21573 * 119.99674 * 0.02562 * 25 24 15 27 27 O 1.34838 * 119.99992 * 179.97438 * 25 24 15 28 28 H 1.08997 * 109.47315 * 309.30984 * 1 2 3 29 29 H 1.08995 * 109.47123 * 69.31817 * 1 2 3 30 30 H 1.09002 * 109.46341 * 189.30852 * 1 2 3 31 31 H 1.09003 * 109.46906 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47678 * 300.00121 * 3 2 1 33 33 H 1.09004 * 109.47023 * 60.00697 * 3 2 1 34 34 H 0.97002 * 119.99348 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.47446 * 180.02562 * 12 2 1 36 36 H 1.09006 * 109.46924 * 60.00586 * 12 2 1 37 37 H 1.00900 * 110.99865 * 303.95065 * 13 12 2 38 38 H 1.09011 * 109.47079 * 59.99912 * 14 13 12 39 39 H 1.09002 * 109.47120 * 300.00120 * 14 13 12 40 40 H 1.07995 * 120.09187 * 0.29175 * 17 16 15 41 41 H 1.08001 * 119.69435 * 180.24112 * 18 17 16 42 42 H 1.08002 * 119.67505 * 179.79224 * 19 18 17 43 43 H 1.08003 * 120.08950 * 179.97438 * 20 19 18 44 44 H 0.96702 * 116.99852 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0325 -0.7103 -1.2305 5 1 2.6352 -1.6010 -1.1316 6 6 1.7226 -0.2230 -2.4826 7 7 1.9164 -0.9721 -3.5461 8 14 1.0277 1.5009 -2.6682 9 1 2.1418 2.4820 -2.7081 10 1 0.2472 1.5869 -3.9287 11 1 0.1418 1.8043 -1.5157 12 6 2.0401 -0.7212 1.2492 13 7 1.5504 -0.0288 2.4487 14 6 2.0209 -0.6952 3.6703 15 6 1.4993 0.0413 4.8771 16 6 0.2770 -0.2107 5.5450 17 6 -0.7618 -1.1278 5.3368 18 6 -1.8407 -1.1321 6.1719 19 6 -1.9250 -0.2283 7.2239 20 6 -0.9195 0.6854 7.4464 21 6 0.1938 0.7069 6.6106 22 7 1.3302 1.4797 6.5773 23 1 1.5443 2.1960 7.1953 24 6 2.1181 1.0671 5.5198 25 6 3.4165 1.6453 5.1485 26 8 4.0276 1.2048 4.1943 27 8 3.9300 2.6653 5.8655 28 1 -0.3634 0.6510 0.7951 29 1 -0.3633 0.3629 -0.9614 30 1 -0.3632 -1.0142 0.1662 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6981 -0.6295 -4.4269 35 1 3.1301 -0.7208 1.2495 36 1 1.6768 -1.7489 1.2491 37 1 1.8198 0.9435 2.4402 38 1 3.1109 -0.6954 3.6873 39 1 1.6572 -1.7226 3.6868 40 1 -0.7054 -1.8339 4.5216 41 1 -2.6383 -1.8424 6.0117 42 1 -2.7876 -0.2430 7.8736 43 1 -0.9945 1.3841 8.2665 44 1 4.7869 3.0130 5.5827 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603575694.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:37 Heat of formation + Delta-G solvation = -15.688444 kcal Electronic energy + Delta-G solvation = -26546.405169 eV Core-core repulsion = 22850.690714 eV Total energy + Delta-G solvation = -3695.714455 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.88493 -40.00131 -37.32977 -36.94885 -36.37421 -34.38261 -32.23658 -31.23151 -29.89522 -29.40449 -26.26809 -26.09041 -25.01901 -24.76895 -23.07252 -22.19088 -21.61698 -19.55709 -18.75278 -18.53691 -17.90426 -17.07233 -16.15368 -16.08656 -15.91692 -15.42328 -14.73492 -14.68707 -14.58988 -14.24894 -13.96047 -13.65047 -13.53705 -13.29230 -12.77078 -12.53433 -12.41815 -12.00160 -11.95304 -11.92065 -11.77581 -11.71034 -11.54930 -11.09058 -10.98123 -10.60382 -10.22435 -10.09107 -9.93263 -9.82824 -9.71676 -8.88288 -8.48305 -8.47760 -8.30015 -7.97478 -7.67978 -6.01125 -3.95878 0.44393 1.44763 1.74702 2.48309 2.85903 2.88648 3.37414 3.46954 3.50092 3.73683 4.49731 4.50759 4.68954 4.75970 4.91356 5.02239 5.11888 5.16617 5.32496 5.33348 5.47329 5.60467 5.79899 5.91772 5.99010 6.10739 6.15041 6.25133 6.32095 6.33803 6.36296 6.47885 6.52256 6.61330 6.69745 6.86599 6.89873 6.90614 7.02817 7.16081 7.16999 7.49042 7.57998 7.60702 7.71134 7.93509 8.03034 8.63394 9.04318 9.65588 11.12434 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.003821 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.739757 B = 7326.855261 C = 8444.713267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.041 3.959 3 C -0.147 4.147 4 C -0.509 4.509 5 H 0.072 0.928 6 C 0.073 3.927 7 N -0.898 5.898 8 Si 0.884 3.116 9 H -0.289 1.289 10 H -0.308 1.308 11 H -0.246 1.246 12 C 0.085 3.915 13 N -0.678 5.678 14 C 0.109 3.891 15 C -0.035 4.035 16 C -0.109 4.109 17 C -0.039 4.039 18 C -0.156 4.156 19 C -0.080 4.080 20 C -0.143 4.143 21 C 0.121 3.879 22 N -0.571 5.571 23 H 0.423 0.577 24 C 0.015 3.985 25 C 0.545 3.455 26 O -0.485 6.485 27 O -0.521 6.521 28 H 0.031 0.969 29 H 0.042 0.958 30 H 0.040 0.960 31 H 0.046 0.954 32 H 0.038 0.962 33 H 0.031 0.969 34 H 0.262 0.738 35 H 0.023 0.977 36 H 0.065 0.935 37 H 0.336 0.664 38 H 0.055 0.945 39 H 0.080 0.920 40 H 0.131 0.869 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.121 0.879 44 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.228 5.226 25.737 26.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.040 3.960 3 C -0.204 4.204 4 C -0.547 4.547 5 H 0.090 0.910 6 C -0.128 4.128 7 N -0.536 5.536 8 Si 0.717 3.283 9 H -0.217 1.217 10 H -0.237 1.237 11 H -0.172 1.172 12 C -0.043 4.043 13 N -0.310 5.310 14 C -0.020 4.020 15 C -0.044 4.044 16 C -0.114 4.114 17 C -0.057 4.057 18 C -0.175 4.175 19 C -0.099 4.099 20 C -0.163 4.163 21 C 0.011 3.989 22 N -0.175 5.175 23 H 0.261 0.739 24 C -0.092 4.092 25 C 0.388 3.612 26 O -0.372 6.372 27 O -0.334 6.334 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.083 0.917 37 H 0.154 0.846 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.149 0.851 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.139 0.861 44 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -3.924 4.714 25.442 26.171 hybrid contribution 1.372 1.965 -0.102 2.399 sum -2.552 6.679 25.340 26.329 Atomic orbital electron populations 1.22063 0.97454 0.99699 0.99117 1.18476 0.92877 0.91467 0.93227 1.22344 1.00391 0.99160 0.98498 1.20878 1.33360 1.11964 0.88506 0.91036 1.24967 0.94755 0.97268 0.95845 1.69972 1.49033 1.35960 0.98616 0.87317 0.79360 0.85717 0.75901 1.21715 1.23665 1.17165 1.21958 0.96329 0.97733 0.88254 1.60738 1.63216 1.06388 1.00644 1.20539 0.98085 0.97038 0.86325 1.19659 0.93026 0.94974 0.96729 1.17984 0.96266 0.99811 0.97346 1.20525 0.91375 0.96096 0.97750 1.20672 0.99112 1.01058 0.96695 1.20910 0.97442 0.94243 0.97316 1.20010 0.93039 1.02615 1.00659 1.18355 0.88901 0.93609 0.98076 1.41732 1.16499 1.32066 1.27252 0.73875 1.18690 0.92664 1.02132 0.95709 1.19667 0.84148 0.77327 0.80040 1.91019 1.59723 1.59546 1.26901 1.84533 1.41778 1.48663 1.58462 0.94957 0.93890 0.94060 0.93536 0.94368 0.94965 0.92836 0.95828 0.91658 0.84590 0.92709 0.90208 0.85131 0.85707 0.85588 0.86082 0.72188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 7.55 37.16 0.28 -2.60 16 2 C 0.04 0.96 0.57 -155.66 -0.09 0.87 16 3 C -0.15 -3.32 7.36 37.16 0.27 -3.05 16 4 C -0.51 -14.39 8.62 -34.44 -0.30 -14.69 16 5 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 6 C 0.07 2.14 5.32 -17.82 -0.09 2.04 16 7 N -0.90 -27.92 13.96 55.43 0.77 -27.14 16 8 Si 0.88 22.56 22.79 -169.99 -3.87 18.69 16 9 H -0.29 -7.35 7.10 56.52 0.40 -6.94 16 10 H -0.31 -7.95 7.11 56.52 0.40 -7.55 16 11 H -0.25 -5.87 4.65 56.52 0.26 -5.61 16 12 C 0.09 1.77 4.57 -3.83 -0.02 1.75 16 13 N -0.68 -12.10 5.88 -115.05 -0.68 -12.78 16 14 C 0.11 1.69 5.56 -4.98 -0.03 1.66 16 15 C -0.03 -0.48 5.69 -104.18 -0.59 -1.08 16 16 C -0.11 -1.42 6.11 -106.94 -0.65 -2.07 16 17 C -0.04 -0.46 10.06 -39.52 -0.40 -0.85 16 18 C -0.16 -1.51 9.97 -39.97 -0.40 -1.91 16 19 C -0.08 -0.68 10.01 -39.53 -0.40 -1.08 16 20 C -0.14 -1.29 10.08 -39.42 -0.40 -1.69 16 21 C 0.12 1.36 7.25 -83.98 -0.61 0.75 16 22 N -0.57 -5.80 6.19 -7.37 -0.05 -5.85 16 23 H 0.42 3.08 8.96 -40.82 -0.37 2.72 16 24 C 0.02 0.19 6.99 -82.31 -0.58 -0.38 16 25 C 0.54 6.61 8.32 34.24 0.28 6.89 16 26 O -0.49 -7.38 15.36 -19.32 -0.30 -7.67 16 27 O -0.52 -4.30 13.44 -40.87 -0.55 -4.85 16 28 H 0.03 0.68 7.88 -51.93 -0.41 0.27 16 29 H 0.04 1.03 4.30 -51.93 -0.22 0.81 16 30 H 0.04 0.92 8.12 -51.93 -0.42 0.49 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.04 0.90 2.25 -51.93 -0.12 0.79 16 33 H 0.03 0.64 6.57 -51.93 -0.34 0.30 16 34 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.34 6.17 6.76 -39.29 -0.27 5.90 16 38 H 0.05 0.89 6.32 -51.92 -0.33 0.57 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 44 H 0.42 1.71 9.11 45.56 0.42 2.13 16 LS Contribution 351.88 15.07 5.30 5.30 Total: -1.00 -33.90 351.88 -8.20 -42.10 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -5.13 Total: 7.63 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -3.71 Total: -15.42 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.05 Total: -45.77 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -0.85 Total: -12.52 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -3.87 Total: 18.69 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.90 -8.20 -42.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603575694.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.412 kcal (2) G-P(sol) polarization free energy of solvation -33.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds