Wall clock time and date at job start Tue Mar 31 2020 11:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46519 * 2 1 4 4 C 1.50696 * 109.47398 * 240.00549 * 2 1 3 5 5 H 1.08003 * 120.00036 * 241.35842 * 4 2 1 6 6 C 1.37881 * 120.00092 * 61.35549 * 4 2 1 7 7 N 1.31521 * 119.99436 * 193.96444 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 13.96355 * 6 4 2 9 9 H 1.48501 * 109.46809 * 84.55955 * 8 6 4 10 10 H 1.48501 * 109.47026 * 204.55488 * 8 6 4 11 11 H 1.48498 * 109.47080 * 324.55623 * 8 6 4 12 12 C 1.52993 * 109.47207 * 119.99878 * 2 1 3 13 13 N 1.46903 * 109.47497 * 300.00437 * 12 2 1 14 14 C 1.46897 * 111.00172 * 179.97438 * 13 12 2 15 15 C 1.50699 * 109.47165 * 180.02562 * 14 13 12 16 16 C 1.41545 * 126.14243 * 89.99928 * 15 14 13 17 17 C 1.40125 * 133.35619 * 359.71620 * 16 15 14 18 18 C 1.36435 * 119.82556 * 179.86387 * 17 16 15 19 19 C 1.38950 * 120.61704 * 0.45535 * 18 17 16 20 20 C 1.37670 * 120.64880 * 359.76559 * 19 18 17 21 21 C 1.39226 * 119.81574 * 0.02562 * 20 19 18 22 22 N 1.37470 * 133.17210 * 179.97438 * 21 20 19 23 23 H 0.96996 * 125.60883 * 0.04833 * 22 21 20 24 24 C 1.35952 * 126.13919 * 269.99832 * 15 14 13 25 25 C 1.46901 * 125.44276 * 0.02562 * 24 15 14 26 26 O 1.21573 * 119.99674 * 0.02562 * 25 24 15 27 27 O 1.34838 * 119.99992 * 179.97438 * 25 24 15 28 28 H 1.08997 * 109.47315 * 309.30984 * 1 2 3 29 29 H 1.08995 * 109.47123 * 69.31817 * 1 2 3 30 30 H 1.09002 * 109.46341 * 189.30852 * 1 2 3 31 31 H 1.09003 * 109.46906 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47678 * 300.00121 * 3 2 1 33 33 H 1.09004 * 109.47023 * 60.00697 * 3 2 1 34 34 H 0.97002 * 119.99348 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.47446 * 180.02562 * 12 2 1 36 36 H 1.09006 * 109.46924 * 60.00586 * 12 2 1 37 37 H 1.00900 * 110.99865 * 303.95065 * 13 12 2 38 38 H 1.09011 * 109.47079 * 59.99912 * 14 13 12 39 39 H 1.09002 * 109.47120 * 300.00120 * 14 13 12 40 40 H 1.07995 * 120.09187 * 0.29175 * 17 16 15 41 41 H 1.08001 * 119.69435 * 180.24112 * 18 17 16 42 42 H 1.08002 * 119.67505 * 179.79224 * 19 18 17 43 43 H 1.08003 * 120.08950 * 179.97438 * 20 19 18 44 44 H 0.96702 * 116.99852 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0325 -0.7103 -1.2305 5 1 2.6352 -1.6010 -1.1316 6 6 1.7226 -0.2230 -2.4826 7 7 1.9164 -0.9721 -3.5461 8 14 1.0277 1.5009 -2.6682 9 1 2.1418 2.4820 -2.7081 10 1 0.2472 1.5869 -3.9287 11 1 0.1418 1.8043 -1.5157 12 6 2.0401 -0.7212 1.2492 13 7 1.5504 -0.0288 2.4487 14 6 2.0209 -0.6952 3.6703 15 6 1.4993 0.0413 4.8771 16 6 0.2770 -0.2107 5.5450 17 6 -0.7618 -1.1278 5.3368 18 6 -1.8407 -1.1321 6.1719 19 6 -1.9250 -0.2283 7.2239 20 6 -0.9195 0.6854 7.4464 21 6 0.1938 0.7069 6.6106 22 7 1.3302 1.4797 6.5773 23 1 1.5443 2.1960 7.1953 24 6 2.1181 1.0671 5.5198 25 6 3.4165 1.6453 5.1485 26 8 4.0276 1.2048 4.1943 27 8 3.9300 2.6653 5.8655 28 1 -0.3634 0.6510 0.7951 29 1 -0.3633 0.3629 -0.9614 30 1 -0.3632 -1.0142 0.1662 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6981 -0.6295 -4.4269 35 1 3.1301 -0.7208 1.2495 36 1 1.6768 -1.7489 1.2491 37 1 1.8198 0.9435 2.4402 38 1 3.1109 -0.6954 3.6873 39 1 1.6572 -1.7226 3.6868 40 1 -0.7054 -1.8339 4.5216 41 1 -2.6383 -1.8424 6.0117 42 1 -2.7876 -0.2430 7.8736 43 1 -0.9945 1.3841 8.2665 44 1 4.7869 3.0130 5.5827 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603575694.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:36 Heat of formation + Delta-G solvation = -40.450502 kcal Electronic energy + Delta-G solvation = -26547.478932 eV Core-core repulsion = 22850.690714 eV Total energy + Delta-G solvation = -3696.788218 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.73865 -40.87705 -38.96641 -37.78745 -37.27531 -35.85425 -33.90977 -32.71858 -30.69897 -30.34358 -27.98889 -27.52711 -27.03338 -25.81378 -24.57842 -22.98744 -22.43246 -20.76971 -20.29047 -19.48186 -18.79443 -18.05463 -17.86499 -17.41945 -16.98621 -16.91833 -16.11807 -15.65370 -15.51830 -15.38073 -15.01540 -14.92989 -14.77701 -14.64452 -14.33380 -14.29004 -13.85608 -13.73010 -13.59721 -12.96648 -12.77797 -12.67222 -12.52541 -12.51166 -12.28772 -11.97603 -11.91095 -11.83307 -11.70102 -11.56205 -10.96843 -10.78093 -10.56327 -10.32981 -9.28130 -9.24674 -8.72709 -8.28287 -6.26899 -0.42408 0.67918 0.90569 1.34884 1.38335 1.49196 1.65197 1.92913 2.13183 2.36261 2.95350 3.08479 3.50098 3.72132 3.91216 3.91833 4.18129 4.23428 4.30529 4.37331 4.43342 4.53136 4.58669 4.64997 4.68852 4.80334 4.83953 4.88841 4.94919 5.04186 5.09688 5.16490 5.21074 5.31485 5.39120 5.50562 5.55977 5.60022 5.64096 5.75574 5.75824 5.87294 6.14292 6.16155 6.34962 6.46326 6.52828 6.78633 6.82511 7.37867 8.89031 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.003821 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.739757 B = 7326.855261 C = 8444.713267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.036 3.964 3 C -0.143 4.143 4 C -0.512 4.512 5 H 0.030 0.970 6 C 0.018 3.982 7 N -0.947 5.947 8 Si 0.941 3.059 9 H -0.285 1.285 10 H -0.312 1.312 11 H -0.215 1.215 12 C 0.099 3.901 13 N -0.669 5.669 14 C 0.117 3.883 15 C -0.062 4.062 16 C -0.132 4.132 17 C -0.067 4.067 18 C -0.152 4.152 19 C -0.078 4.078 20 C -0.139 4.139 21 C 0.113 3.887 22 N -0.554 5.554 23 H 0.437 0.563 24 C 0.014 3.986 25 C 0.551 3.449 26 O -0.523 6.523 27 O -0.505 6.505 28 H 0.054 0.946 29 H 0.032 0.968 30 H 0.038 0.962 31 H 0.040 0.960 32 H 0.032 0.968 33 H 0.061 0.939 34 H 0.263 0.737 35 H 0.008 0.992 36 H 0.057 0.943 37 H 0.335 0.665 38 H 0.043 0.957 39 H 0.080 0.920 40 H 0.121 0.879 41 H 0.144 0.856 42 H 0.160 0.840 43 H 0.152 0.848 44 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.141 7.683 29.065 30.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.035 3.965 3 C -0.200 4.200 4 C -0.550 4.550 5 H 0.048 0.952 6 C -0.179 4.179 7 N -0.587 5.587 8 Si 0.771 3.229 9 H -0.212 1.212 10 H -0.242 1.242 11 H -0.139 1.139 12 C -0.030 4.030 13 N -0.300 5.300 14 C -0.012 4.012 15 C -0.072 4.072 16 C -0.137 4.137 17 C -0.086 4.086 18 C -0.171 4.171 19 C -0.097 4.097 20 C -0.159 4.159 21 C 0.002 3.998 22 N -0.160 5.160 23 H 0.278 0.722 24 C -0.095 4.095 25 C 0.396 3.604 26 O -0.413 6.413 27 O -0.320 6.320 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.026 0.974 36 H 0.076 0.924 37 H 0.153 0.847 38 H 0.061 0.939 39 H 0.099 0.901 40 H 0.139 0.861 41 H 0.162 0.838 42 H 0.178 0.822 43 H 0.170 0.830 44 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -5.830 7.209 28.843 30.296 hybrid contribution 1.988 1.115 -0.993 2.486 sum -3.841 8.324 27.850 29.320 Atomic orbital electron populations 1.21955 0.96317 1.00138 0.99223 1.18467 0.93648 0.92174 0.92222 1.22258 1.00172 0.98097 0.99499 1.21183 1.32251 1.10858 0.90730 0.95192 1.25775 0.95504 1.01185 0.95408 1.70112 1.51244 1.38083 0.99266 0.86378 0.79294 0.80632 0.76586 1.21229 1.24166 1.13865 1.21642 0.95222 0.97343 0.88799 1.60676 1.62837 1.06114 1.00413 1.20407 0.97377 0.97283 0.86154 1.19494 0.94391 0.96334 0.96949 1.18163 0.96250 1.00972 0.98268 1.20615 0.92446 0.96710 0.98810 1.20995 0.98604 1.01259 0.96203 1.21343 0.98250 0.93124 0.96966 1.20423 0.91919 1.02887 1.00684 1.18617 0.89681 0.93394 0.98126 1.41646 1.15771 1.31961 1.26599 0.72166 1.18700 0.92926 1.01791 0.96092 1.19634 0.83838 0.77429 0.79497 1.91011 1.60712 1.60916 1.28650 1.84488 1.43018 1.47109 1.57338 0.92662 0.94952 0.94319 0.94061 0.95019 0.92009 0.92806 0.97387 0.92424 0.84700 0.93914 0.90135 0.86069 0.83828 0.82249 0.83025 0.69892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.27 7.55 71.98 0.54 -4.73 16 2 C 0.04 1.70 0.57 -52.93 -0.03 1.67 16 3 C -0.14 -6.25 7.36 71.98 0.53 -5.72 16 4 C -0.51 -29.84 8.62 25.60 0.22 -29.62 16 5 H 0.03 1.94 7.99 -2.91 -0.02 1.91 16 6 C 0.02 1.09 5.32 84.65 0.45 1.54 16 7 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16 8 Si 0.94 46.36 22.79 68.60 1.56 47.92 16 9 H -0.28 -13.75 7.10 99.48 0.71 -13.05 16 10 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 11 H -0.21 -9.47 4.65 99.48 0.46 -9.01 16 12 C 0.10 4.18 4.57 86.30 0.39 4.58 16 13 N -0.67 -23.72 5.88 -517.92 -3.05 -26.76 16 14 C 0.12 3.67 5.56 85.56 0.48 4.14 16 15 C -0.06 -1.70 5.69 -19.58 -0.11 -1.82 16 16 C -0.13 -3.29 6.11 -21.36 -0.13 -3.42 16 17 C -0.07 -1.52 10.06 22.31 0.22 -1.29 16 18 C -0.15 -2.56 9.97 22.02 0.22 -2.34 16 19 C -0.08 -1.03 10.01 22.31 0.22 -0.80 16 20 C -0.14 -1.98 10.08 22.37 0.23 -1.76 16 21 C 0.11 2.24 7.25 39.14 0.28 2.53 16 22 N -0.55 -9.92 6.19 -177.24 -1.10 -11.01 16 23 H 0.44 5.00 8.96 -92.71 -0.83 4.17 16 24 C 0.01 0.32 6.99 39.88 0.28 0.60 16 25 C 0.55 12.70 8.32 70.09 0.58 13.29 16 26 O -0.52 -15.81 15.36 19.60 0.30 -15.51 16 27 O -0.50 -7.12 13.44 -57.51 -0.77 -7.90 16 28 H 0.05 2.18 7.88 -2.39 -0.02 2.16 16 29 H 0.03 1.48 4.30 -2.39 -0.01 1.47 16 30 H 0.04 1.69 8.12 -2.39 -0.02 1.67 16 31 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.03 1.42 2.25 -2.39 -0.01 1.41 16 33 H 0.06 2.32 6.57 -2.38 -0.02 2.30 16 34 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 35 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 37 H 0.33 11.96 6.76 -89.69 -0.61 11.35 16 38 H 0.04 1.45 6.32 -2.38 -0.02 1.43 16 39 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.12 2.82 8.06 -2.91 -0.02 2.79 16 41 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 42 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 43 H 0.15 1.21 8.06 -2.91 -0.02 1.18 16 44 H 0.44 2.51 9.11 -74.06 -0.67 1.83 16 Total: -1.00 -75.52 351.88 0.34 -75.18 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -1.29 Total: 21.76 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: 4.38 Total: -23.15 kcal Atomic # 7 Polarization: -94.47 SS G_CDS: -3.84 Total: -98.31 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.47 Total: -23.40 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.56 Total: 47.92 kcal Total: -75.52 0.34 -75.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603575694.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.729 kcal (2) G-P(sol) polarization free energy of solvation -75.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds