Wall clock time and date at job start Tue Mar 31 2020 11:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46908 * 2 1 4 4 N 1.46499 * 109.47233 * 186.04152 * 3 2 1 5 5 C 1.36873 * 120.00075 * 278.28109 * 4 3 2 6 6 H 1.08002 * 120.00227 * 139.02682 * 5 4 3 7 7 C 1.39044 * 120.00153 * 319.02235 * 5 4 3 8 8 N 1.31365 * 119.99956 * 161.14408 * 7 5 4 9 9 Si 1.86805 * 119.99983 * 341.15069 * 7 5 4 10 10 H 1.48499 * 109.47103 * 88.68375 * 9 7 5 11 11 H 1.48497 * 109.46811 * 208.68658 * 9 7 5 12 12 H 1.48498 * 109.46890 * 328.68315 * 9 7 5 13 13 C 1.34774 * 119.99936 * 98.28018 * 4 3 2 14 14 O 1.21593 * 120.00320 * 186.38763 * 13 4 3 15 15 C 1.47738 * 120.00357 * 6.38480 * 13 4 3 16 16 C 1.39694 * 120.11261 * 319.79173 * 15 13 4 17 17 C 1.37957 * 119.98539 * 180.02562 * 16 15 13 18 18 C 1.38274 * 120.23268 * 359.74663 * 17 16 15 19 19 C 1.38968 * 120.23166 * 0.51023 * 18 17 16 20 20 N 1.39950 * 119.99495 * 179.76589 * 19 18 17 21 21 C 1.46766 * 124.35224 * 354.17516 * 20 19 18 22 22 C 1.54481 * 105.47461 * 162.98516 * 21 20 19 23 23 C 1.54626 * 101.76416 * 25.41281 * 22 21 20 24 24 C 1.34428 * 124.35071 * 174.17194 * 20 19 18 25 25 O 1.21283 * 124.93852 * 0.67282 * 24 20 19 26 26 C 1.38613 * 120.00619 * 359.48637 * 19 18 17 27 27 H 1.08994 * 109.47038 * 300.00026 * 1 2 3 28 28 H 1.09005 * 109.46915 * 60.00110 * 1 2 3 29 29 H 1.09004 * 109.46794 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47202 * 240.00254 * 2 1 3 31 31 H 1.09000 * 109.47327 * 120.00067 * 2 1 3 32 32 H 1.09002 * 109.47279 * 66.04525 * 3 2 1 33 33 H 1.08997 * 109.47426 * 306.04354 * 3 2 1 34 34 H 0.97003 * 119.99640 * 180.02562 * 8 7 5 35 35 H 1.07995 * 120.00816 * 359.97438 * 16 15 13 36 36 H 1.08003 * 119.88486 * 179.97438 * 17 16 15 37 37 H 1.07999 * 119.88607 * 180.27088 * 18 17 16 38 38 H 1.08998 * 110.24239 * 43.98126 * 21 20 19 39 39 H 1.09006 * 110.24450 * 281.98255 * 21 20 19 40 40 H 1.09004 * 110.96608 * 267.29504 * 22 21 20 41 41 H 1.08998 * 110.99826 * 143.54889 * 22 21 20 42 42 H 1.09002 * 110.48094 * 216.52049 * 23 22 21 43 43 H 1.09004 * 110.48618 * 93.88917 * 23 22 21 44 44 H 1.08004 * 120.10873 * 180.23148 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.4977 1.4452 -0.1454 5 6 4.2948 1.2346 0.9472 6 1 5.1735 0.6123 0.8628 7 6 3.9734 1.8220 2.1658 8 7 4.4889 1.3506 3.2784 9 14 2.8085 3.2813 2.2210 10 1 1.4104 2.7945 2.3375 11 1 3.1359 4.1319 3.3933 12 1 2.9533 4.0775 0.9759 13 6 4.0539 1.6549 -1.3549 14 8 5.2560 1.5424 -1.4992 15 6 3.2031 2.0214 -2.5058 16 6 1.9614 1.4065 -2.6834 17 6 1.1693 1.7503 -3.7592 18 6 1.5974 2.7066 -4.6615 19 6 2.8332 3.3205 -4.4969 20 7 3.2638 4.2842 -5.4158 21 6 2.5476 4.6308 -6.6491 22 6 3.1282 5.9913 -7.0945 23 6 4.5342 5.9595 -6.4518 24 6 4.3864 5.0115 -5.2823 25 8 5.1695 4.9174 -4.3610 26 6 3.6370 2.9825 -3.4193 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.7676 1.9242 0.9392 33 1 1.5910 1.9866 -0.8309 34 1 4.2644 1.7602 4.1286 35 1 1.6220 0.6614 -1.9791 36 1 0.2097 1.2736 -3.8952 37 1 0.9708 2.9747 -5.4994 38 1 1.4796 4.7228 -6.4518 39 1 2.7269 3.8755 -7.4144 40 1 2.5366 6.8164 -6.6979 41 1 3.1970 6.0499 -8.1807 42 1 4.8172 6.9531 -6.1041 43 1 5.2694 5.5790 -7.1610 44 1 4.5962 3.4612 -3.2877 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056484682.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:13 Heat of formation + Delta-G solvation = -7.574111 kcal Electronic energy + Delta-G solvation = -26980.368450 eV Core-core repulsion = 23285.005860 eV Total energy + Delta-G solvation = -3695.362591 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.12728 -39.56211 -37.63759 -36.63307 -35.64634 -33.37997 -32.73999 -31.60910 -30.74593 -29.06192 -27.96851 -25.97161 -25.30273 -23.37311 -22.90036 -21.67770 -21.35473 -20.11435 -18.96596 -17.47518 -16.99267 -16.95859 -16.73110 -15.76557 -15.59903 -15.37480 -14.61205 -14.38189 -14.20676 -14.00221 -13.82866 -13.62460 -13.48587 -13.20260 -13.17831 -12.94956 -12.50191 -12.33508 -12.15822 -12.01647 -11.84692 -11.66921 -11.44987 -11.36490 -11.30865 -10.82068 -10.75022 -10.53153 -10.26494 -9.97429 -9.74210 -9.59725 -9.05933 -8.67377 -8.46861 -7.81226 -7.68577 -6.38334 -3.96904 1.25079 1.53725 2.51130 2.67626 3.03652 3.23539 3.30963 3.64083 3.98435 4.05767 4.16395 4.20115 4.41562 4.46212 4.65651 4.89544 5.01851 5.04707 5.12255 5.16023 5.30197 5.34727 5.39436 5.42099 5.49659 5.53574 5.56833 5.66433 5.71373 5.80152 5.87680 6.07953 6.13448 6.22453 6.27374 6.30654 6.52473 6.57292 6.60668 6.78853 6.90538 7.03787 7.23135 7.58636 7.98257 8.31482 8.54171 8.96655 9.31558 9.78713 10.73181 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.016400 B = 0.004302 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.893870 B = 6507.643324 C = 7344.150194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.140 4.140 3 C 0.072 3.928 4 N -0.456 5.456 5 C -0.311 4.311 6 H 0.107 0.893 7 C 0.065 3.935 8 N -0.862 5.862 9 Si 0.874 3.126 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.263 1.263 13 C 0.501 3.499 14 O -0.553 6.553 15 C -0.074 4.074 16 C -0.142 4.142 17 C -0.101 4.101 18 C -0.156 4.156 19 C 0.153 3.847 20 N -0.560 5.560 21 C 0.097 3.903 22 C -0.131 4.131 23 C -0.152 4.152 24 C 0.507 3.493 25 O -0.498 6.498 26 C -0.113 4.113 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.275 0.725 35 H 0.148 0.852 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.409 6.590 -20.300 24.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.178 4.178 3 C -0.051 4.051 4 N -0.176 5.176 5 C -0.438 4.438 6 H 0.125 0.875 7 C -0.142 4.142 8 N -0.498 5.498 9 Si 0.702 3.298 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.188 1.188 13 C 0.290 3.710 14 O -0.435 6.435 15 C -0.079 4.079 16 C -0.161 4.161 17 C -0.120 4.120 18 C -0.177 4.177 19 C 0.060 3.940 20 N -0.285 5.285 21 C -0.026 4.026 22 C -0.169 4.169 23 C -0.192 4.192 24 C 0.296 3.704 25 O -0.371 6.371 26 C -0.134 4.134 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.165 0.835 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.113 0.887 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -11.298 6.505 -19.621 23.557 hybrid contribution -0.802 0.777 0.179 1.131 sum -12.101 7.282 -19.442 24.030 Atomic orbital electron populations 1.21775 0.96028 1.01465 1.01651 1.21927 0.94861 0.97719 1.03289 1.22338 0.83345 0.97092 1.02296 1.43614 1.04128 1.62575 1.07267 1.19037 1.09813 1.29659 0.85300 0.87549 1.25373 0.97047 0.96739 0.95027 1.69697 1.43359 1.38829 0.97868 0.87045 0.80258 0.83889 0.78560 1.19701 1.21345 1.18772 1.18231 0.87392 0.81975 0.83379 1.90669 1.14713 1.54128 1.83951 1.20297 0.94899 0.96628 0.96032 1.22097 0.93905 1.01454 0.98640 1.20810 0.99729 0.97317 0.94145 1.20730 0.94918 1.00278 1.01762 1.17602 0.94277 0.91493 0.90654 1.45758 1.24411 1.36597 1.21741 1.22217 0.97685 0.97180 0.85489 1.22614 0.95420 0.96805 1.02034 1.22338 0.99059 1.00990 0.96858 1.21133 0.80280 0.81456 0.87538 1.90741 1.44455 1.67161 1.34792 1.21632 1.01400 0.97923 0.92473 0.92685 0.92914 0.92631 0.91623 0.90116 0.91424 0.90299 0.91499 0.83498 0.85518 0.86023 0.89602 0.90186 0.89657 0.88702 0.87555 0.87358 0.82187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.81 37.16 0.36 -1.67 16 2 C -0.14 -2.47 5.20 -26.73 -0.14 -2.61 16 3 C 0.07 1.52 3.91 -4.04 -0.02 1.50 16 4 N -0.46 -11.69 2.14 -115.93 -0.25 -11.94 16 5 C -0.31 -9.10 9.28 -15.00 -0.14 -9.24 16 6 H 0.11 3.48 7.92 -52.49 -0.42 3.07 16 7 C 0.06 1.83 5.37 -17.45 -0.09 1.74 16 8 N -0.86 -25.30 13.95 55.50 0.77 -24.53 16 9 Si 0.87 21.41 25.23 -169.99 -4.29 17.12 16 10 H -0.27 -6.01 6.43 56.52 0.36 -5.65 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.26 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.50 13.06 7.28 -12.38 -0.09 12.97 16 14 O -0.55 -16.62 16.82 5.28 0.09 -16.53 16 15 C -0.07 -1.58 5.28 -104.99 -0.55 -2.13 16 16 C -0.14 -2.39 7.36 -39.14 -0.29 -2.68 16 17 C -0.10 -1.34 10.02 -39.67 -0.40 -1.74 16 18 C -0.16 -2.00 9.41 -39.30 -0.37 -2.37 16 19 C 0.15 2.41 6.59 -83.74 -0.55 1.86 16 20 N -0.56 -7.21 3.14 -112.31 -0.35 -7.56 16 21 C 0.10 0.69 6.50 -3.12 -0.02 0.67 16 22 C -0.13 -0.66 7.18 -25.10 -0.18 -0.84 16 23 C -0.15 -1.21 6.86 -26.75 -0.18 -1.40 16 24 C 0.51 7.18 7.92 -10.86 -0.09 7.09 16 25 O -0.50 -9.70 14.81 5.55 0.08 -9.62 16 26 C -0.11 -2.32 8.88 -38.97 -0.35 -2.66 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.61 7.87 -51.93 -0.41 0.20 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.12 6.60 -51.93 -0.34 0.77 16 31 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.07 1.50 2.93 -51.93 -0.15 1.35 16 33 H 0.08 1.49 4.69 -51.93 -0.24 1.25 16 34 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.15 2.36 2.92 -52.49 -0.15 2.20 16 36 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 37 H 0.12 1.11 6.73 -52.49 -0.35 0.76 16 38 H 0.09 0.49 7.22 -51.93 -0.38 0.12 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.16 3.76 5.24 -52.48 -0.28 3.48 16 LS Contribution 347.23 15.07 5.23 5.23 Total: -1.00 -37.00 347.23 -7.50 -44.50 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.70 Total: 4.82 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -3.09 Total: -1.50 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.17 Total: -44.03 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: 0.17 Total: -26.15 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.29 Total: 17.12 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -37.00 -7.50 -44.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056484682.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.926 kcal (2) G-P(sol) polarization free energy of solvation -36.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds