Wall clock time and date at job start Tue Mar 31 2020 11:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46876 * 2 1 4 4 N 1.46502 * 109.46834 * 180.02562 * 3 2 1 5 5 C 1.36750 * 119.99775 * 264.35995 * 4 3 2 6 6 H 1.07994 * 120.00189 * 143.93783 * 5 4 3 7 7 C 1.39096 * 119.99561 * 323.94340 * 5 4 3 8 8 N 1.31343 * 120.00458 * 341.44918 * 7 5 4 9 9 Si 1.86797 * 119.99762 * 161.45388 * 7 5 4 10 10 H 1.48508 * 109.47342 * 89.99750 * 9 7 5 11 11 H 1.48503 * 109.47232 * 209.99471 * 9 7 5 12 12 H 1.48503 * 109.47352 * 329.99656 * 9 7 5 13 13 C 1.34770 * 120.00404 * 84.35773 * 4 3 2 14 14 O 1.21787 * 120.00112 * 179.97438 * 13 4 3 15 15 C 1.41803 * 119.99811 * 0.27861 * 13 4 3 16 16 C 1.35156 * 119.99951 * 172.46300 * 15 13 4 17 17 C 1.46925 * 119.99712 * 348.64645 * 16 15 13 18 18 C 1.40028 * 120.10393 * 315.86022 * 17 16 15 19 19 C 1.37615 * 119.89539 * 179.74816 * 18 17 16 20 20 C 1.39175 * 120.10098 * 0.50341 * 19 18 17 21 21 N 1.39495 * 119.89156 * 179.74476 * 20 19 18 22 22 C 1.34774 * 119.99713 * 146.52043 * 21 20 19 23 23 C 1.50697 * 120.00355 * 184.66520 * 22 21 20 24 24 O 1.21287 * 119.99776 * 4.66204 * 22 21 20 25 25 C 1.39163 * 120.20690 * 359.76976 * 20 19 18 26 26 C 1.37609 * 120.10398 * 359.97438 * 25 20 19 27 27 H 1.09008 * 109.47186 * 300.00013 * 1 2 3 28 28 H 1.08999 * 109.47221 * 59.99907 * 1 2 3 29 29 H 1.08996 * 109.47537 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46598 * 240.00076 * 2 1 3 31 31 H 1.08999 * 109.47221 * 120.00092 * 2 1 3 32 32 H 1.08998 * 109.47731 * 60.00161 * 3 2 1 33 33 H 1.09005 * 109.47053 * 299.99689 * 3 2 1 34 34 H 0.96996 * 120.00074 * 180.02562 * 8 7 5 35 35 H 1.07994 * 119.99835 * 352.45769 * 15 13 4 36 36 H 1.07996 * 119.99690 * 168.64461 * 16 15 13 37 37 H 1.08001 * 120.04854 * 359.97438 * 18 17 16 38 38 H 1.07994 * 119.94675 * 180.23344 * 19 18 17 39 39 H 0.96996 * 120.00307 * 326.51523 * 21 20 19 40 40 H 1.08999 * 109.47610 * 89.99533 * 23 22 21 41 41 H 1.09000 * 109.47564 * 210.00421 * 23 22 21 42 42 H 1.09003 * 109.46839 * 329.99593 * 23 22 21 43 43 H 1.08007 * 119.94935 * 179.97438 * 25 20 19 44 44 H 1.08004 * 120.05529 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1892 1.5587 1.1777 6 1 5.1139 1.0197 1.3206 7 6 3.6938 2.3712 2.1922 8 7 2.7997 3.2934 1.9177 9 14 4.3004 2.1510 3.9452 10 1 5.4864 3.0157 4.1710 11 1 3.2227 2.5315 4.8934 12 1 4.6743 0.7307 4.1649 13 6 4.1784 1.3279 -1.1624 14 8 5.3963 1.3284 -1.1629 15 6 3.4689 1.2133 -2.3848 16 6 4.1361 1.2518 -3.5595 17 6 5.5477 1.6585 -3.5896 18 6 5.9752 2.7668 -2.8483 19 6 7.2993 3.1408 -2.8755 20 6 8.2109 2.4257 -3.6466 21 7 9.5510 2.8119 -3.6751 22 6 10.5180 1.8811 -3.7983 23 6 11.9676 2.2861 -3.7237 24 8 10.2214 0.7176 -3.9692 25 6 7.7895 1.3269 -4.3895 26 6 6.4685 0.9423 -4.3643 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6766 1.9564 -0.8901 34 1 2.4546 3.8602 2.6251 35 1 2.3955 1.0953 -2.3771 36 1 3.6317 0.9835 -4.4760 37 1 5.2676 3.3250 -2.2532 38 1 7.6306 3.9932 -2.3011 39 1 9.7869 3.7502 -3.6065 40 1 12.3057 2.2374 -2.6886 41 1 12.5659 1.6093 -4.3336 42 1 12.0798 3.3048 -4.0949 43 1 8.5005 0.7752 -4.9867 44 1 6.1425 0.0892 -4.9408 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056484972.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:49 Heat of formation + Delta-G solvation = -9.312905 kcal Electronic energy + Delta-G solvation = -26227.378899 eV Core-core repulsion = 22531.940909 eV Total energy + Delta-G solvation = -3695.437990 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.26966 -39.12456 -37.79657 -35.55277 -34.57393 -33.03943 -32.28895 -31.24379 -30.37499 -30.27842 -27.83774 -25.97663 -24.82656 -23.17322 -22.19820 -21.26551 -20.82795 -20.14378 -17.98077 -17.51353 -17.01475 -16.80342 -16.46112 -15.45557 -15.12003 -14.67894 -14.30319 -14.23200 -13.91845 -13.75769 -13.61759 -13.22935 -13.13697 -12.88529 -12.70861 -12.59250 -12.40504 -12.25065 -12.00500 -11.63450 -11.44857 -11.31616 -11.10031 -10.91987 -10.71355 -10.64151 -10.38732 -10.31474 -10.14221 -9.93408 -9.71417 -9.02523 -8.78107 -8.49826 -8.10944 -7.42418 -7.05697 -6.37218 -3.95378 1.30648 2.09620 2.31000 2.77502 3.16237 3.22429 3.22851 3.28714 4.12430 4.43181 4.50127 4.69135 4.94453 5.00198 5.11235 5.20320 5.38895 5.39981 5.57207 5.60666 5.61360 5.68361 5.73160 5.88857 5.95241 6.00986 6.10683 6.17808 6.24973 6.37832 6.48381 6.57720 6.60646 6.66963 6.75568 6.85249 6.88810 6.96256 7.09106 7.29049 7.31049 7.53209 7.54623 7.59772 8.19148 8.25558 8.53081 9.20218 9.40068 10.07033 10.64186 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014088 B = 0.003745 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.967860 B = 7474.898094 C = 8869.708058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.098 3.902 4 N -0.427 5.427 5 C -0.297 4.297 6 H 0.092 0.908 7 C 0.036 3.964 8 N -0.866 5.866 9 Si 0.918 3.082 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.468 3.532 14 O -0.570 6.570 15 C -0.177 4.177 16 C -0.076 4.076 17 C -0.053 4.053 18 C -0.005 4.005 19 C -0.156 4.156 20 C 0.132 3.868 21 N -0.669 5.669 22 C 0.505 3.495 23 C -0.170 4.170 24 O -0.528 6.528 25 C -0.139 4.139 26 C -0.097 4.097 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.115 0.885 33 H 0.049 0.951 34 H 0.269 0.731 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.407 0.593 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.131 0.869 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.886 1.531 -10.229 11.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C -0.026 4.026 4 N -0.143 5.143 5 C -0.426 4.426 6 H 0.110 0.890 7 C -0.169 4.169 8 N -0.504 5.504 9 Si 0.744 3.256 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.193 1.193 13 C 0.260 3.740 14 O -0.456 6.456 15 C -0.198 4.198 16 C -0.097 4.097 17 C -0.054 4.054 18 C -0.024 4.024 19 C -0.176 4.176 20 C 0.038 3.962 21 N -0.314 5.314 22 C 0.293 3.707 23 C -0.230 4.230 24 O -0.404 6.404 25 C -0.159 4.159 26 C -0.115 4.115 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.133 0.867 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.242 0.758 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.099 0.901 43 H 0.148 0.852 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.216 0.845 -10.152 11.445 hybrid contribution 0.077 0.392 1.198 1.263 sum 5.293 1.237 -8.954 10.475 Atomic orbital electron populations 1.21677 0.96352 1.00670 1.01538 1.22002 0.94891 0.99270 1.01792 1.21742 0.82201 0.94472 1.04213 1.43572 1.04637 1.60623 1.05454 1.19472 1.07762 1.25274 0.90052 0.89033 1.25393 0.97065 0.93846 1.00558 1.69830 1.30018 1.17092 1.33477 0.86074 0.78450 0.79116 0.81962 1.20250 1.20747 1.19343 1.17142 0.88076 0.84573 0.84231 1.90741 1.13210 1.55274 1.86356 1.22484 0.99923 1.03226 0.94167 1.22079 0.92914 0.97653 0.97038 1.18804 0.93170 0.95805 0.97644 1.20878 0.94838 0.94486 0.92215 1.20587 0.93663 1.02559 1.00785 1.17721 0.82517 0.97761 0.98151 1.43453 1.04864 1.10493 1.72555 1.20928 0.88200 0.85642 0.75924 1.21877 0.92309 1.03618 1.05161 1.90727 1.83732 1.18714 1.47179 1.20902 0.95895 0.98088 1.00986 1.20974 0.92552 0.98883 0.99139 0.92760 0.93165 0.93459 0.93043 0.91835 0.86727 0.93299 0.92094 0.86309 0.86056 0.86250 0.86587 0.75794 0.88603 0.88783 0.90140 0.85152 0.86560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.14 -2.56 6.04 -26.73 -0.16 -2.72 16 3 C 0.10 2.10 4.54 -4.04 -0.02 2.08 16 4 N -0.43 -10.69 2.54 -117.99 -0.30 -10.99 16 5 C -0.30 -8.13 8.95 -15.04 -0.13 -8.27 16 6 H 0.09 2.66 7.72 -52.49 -0.41 2.26 16 7 C 0.04 0.93 4.99 -17.44 -0.09 0.84 16 8 N -0.87 -22.69 11.25 55.50 0.62 -22.06 16 9 Si 0.92 20.41 29.59 -169.99 -5.03 15.38 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 13 C 0.47 11.40 6.42 -14.90 -0.10 11.31 16 14 O -0.57 -15.50 11.94 5.11 0.06 -15.44 16 15 C -0.18 -3.47 8.48 -39.32 -0.33 -3.80 16 16 C -0.08 -1.33 9.80 -37.16 -0.36 -1.69 16 17 C -0.05 -1.03 4.47 -105.04 -0.47 -1.49 16 18 C -0.01 -0.10 6.65 -39.14 -0.26 -0.36 16 19 C -0.16 -2.81 9.94 -39.46 -0.39 -3.20 16 20 C 0.13 2.25 6.33 -83.68 -0.53 1.72 16 21 N -0.67 -8.72 5.32 -9.83 -0.05 -8.77 16 22 C 0.50 6.77 7.79 -10.99 -0.09 6.68 16 23 C -0.17 -1.33 10.31 36.00 0.37 -0.96 16 24 O -0.53 -9.54 14.41 5.55 0.08 -9.46 16 25 C -0.14 -2.49 8.68 -39.47 -0.34 -2.83 16 26 C -0.10 -1.73 9.79 -39.14 -0.38 -2.11 16 27 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.91 7.37 -51.93 -0.38 0.52 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.12 2.71 5.36 -51.93 -0.28 2.43 16 33 H 0.05 0.97 6.52 -51.93 -0.34 0.63 16 34 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 35 H 0.12 2.03 5.87 -52.49 -0.31 1.73 16 36 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.12 2.60 7.08 -52.49 -0.37 2.22 16 38 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.41 3.67 8.81 -40.82 -0.36 3.31 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.13 2.33 6.08 -52.48 -0.32 2.01 16 44 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 363.73 15.07 5.48 5.48 Total: -1.00 -33.75 363.73 -8.18 -41.92 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -6.13 Total: 10.49 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -2.92 Total: -6.55 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.27 Total: -41.83 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: 0.14 Total: -24.90 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.75 -8.18 -41.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056484972.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.611 kcal (2) G-P(sol) polarization free energy of solvation -33.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds