Wall clock time and date at job start Tue Mar 31 2020 11:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46876 * 2 1 4 4 N 1.46502 * 109.46834 * 180.02562 * 3 2 1 5 5 C 1.36750 * 119.99775 * 264.35995 * 4 3 2 6 6 H 1.07994 * 120.00189 * 143.93783 * 5 4 3 7 7 C 1.39096 * 119.99561 * 323.94340 * 5 4 3 8 8 N 1.31343 * 120.00458 * 341.44918 * 7 5 4 9 9 Si 1.86797 * 119.99762 * 161.45388 * 7 5 4 10 10 H 1.48508 * 109.47342 * 89.99750 * 9 7 5 11 11 H 1.48503 * 109.47232 * 209.99471 * 9 7 5 12 12 H 1.48503 * 109.47352 * 329.99656 * 9 7 5 13 13 C 1.34770 * 120.00404 * 84.35773 * 4 3 2 14 14 O 1.21787 * 120.00112 * 179.97438 * 13 4 3 15 15 C 1.41803 * 119.99811 * 0.27861 * 13 4 3 16 16 C 1.35156 * 119.99951 * 172.46300 * 15 13 4 17 17 C 1.46925 * 119.99712 * 348.64645 * 16 15 13 18 18 C 1.40028 * 120.10393 * 315.86022 * 17 16 15 19 19 C 1.37615 * 119.89539 * 179.74816 * 18 17 16 20 20 C 1.39175 * 120.10098 * 0.50341 * 19 18 17 21 21 N 1.39495 * 119.89156 * 179.74476 * 20 19 18 22 22 C 1.34774 * 119.99713 * 146.52043 * 21 20 19 23 23 C 1.50697 * 120.00355 * 184.66520 * 22 21 20 24 24 O 1.21287 * 119.99776 * 4.66204 * 22 21 20 25 25 C 1.39163 * 120.20690 * 359.76976 * 20 19 18 26 26 C 1.37609 * 120.10398 * 359.97438 * 25 20 19 27 27 H 1.09008 * 109.47186 * 300.00013 * 1 2 3 28 28 H 1.08999 * 109.47221 * 59.99907 * 1 2 3 29 29 H 1.08996 * 109.47537 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46598 * 240.00076 * 2 1 3 31 31 H 1.08999 * 109.47221 * 120.00092 * 2 1 3 32 32 H 1.08998 * 109.47731 * 60.00161 * 3 2 1 33 33 H 1.09005 * 109.47053 * 299.99689 * 3 2 1 34 34 H 0.96996 * 120.00074 * 180.02562 * 8 7 5 35 35 H 1.07994 * 119.99835 * 352.45769 * 15 13 4 36 36 H 1.07996 * 119.99690 * 168.64461 * 16 15 13 37 37 H 1.08001 * 120.04854 * 359.97438 * 18 17 16 38 38 H 1.07994 * 119.94675 * 180.23344 * 19 18 17 39 39 H 0.96996 * 120.00307 * 326.51523 * 21 20 19 40 40 H 1.08999 * 109.47610 * 89.99533 * 23 22 21 41 41 H 1.09000 * 109.47564 * 210.00421 * 23 22 21 42 42 H 1.09003 * 109.46839 * 329.99593 * 23 22 21 43 43 H 1.08007 * 119.94935 * 179.97438 * 25 20 19 44 44 H 1.08004 * 120.05529 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1892 1.5587 1.1777 6 1 5.1139 1.0197 1.3206 7 6 3.6938 2.3712 2.1922 8 7 2.7997 3.2934 1.9177 9 14 4.3004 2.1510 3.9452 10 1 5.4864 3.0157 4.1710 11 1 3.2227 2.5315 4.8934 12 1 4.6743 0.7307 4.1649 13 6 4.1784 1.3279 -1.1624 14 8 5.3963 1.3284 -1.1629 15 6 3.4689 1.2133 -2.3848 16 6 4.1361 1.2518 -3.5595 17 6 5.5477 1.6585 -3.5896 18 6 5.9752 2.7668 -2.8483 19 6 7.2993 3.1408 -2.8755 20 6 8.2109 2.4257 -3.6466 21 7 9.5510 2.8119 -3.6751 22 6 10.5180 1.8811 -3.7983 23 6 11.9676 2.2861 -3.7237 24 8 10.2214 0.7176 -3.9692 25 6 7.7895 1.3269 -4.3895 26 6 6.4685 0.9423 -4.3643 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6766 1.9564 -0.8901 34 1 2.4546 3.8602 2.6251 35 1 2.3955 1.0953 -2.3771 36 1 3.6317 0.9835 -4.4760 37 1 5.2676 3.3250 -2.2532 38 1 7.6306 3.9932 -2.3011 39 1 9.7869 3.7502 -3.6065 40 1 12.3057 2.2374 -2.6886 41 1 12.5659 1.6093 -4.3336 42 1 12.0798 3.3048 -4.0949 43 1 8.5005 0.7752 -4.9867 44 1 6.1425 0.0892 -4.9408 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056484972.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:48 Heat of formation + Delta-G solvation = -30.204709 kcal Electronic energy + Delta-G solvation = -26228.284836 eV Core-core repulsion = 22531.940909 eV Total energy + Delta-G solvation = -3696.343927 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.52001 -40.79564 -39.25095 -37.23249 -35.96892 -34.69342 -33.80370 -32.99510 -31.81922 -31.28025 -29.15781 -27.66413 -26.46501 -24.67230 -23.64386 -22.71832 -22.29233 -21.43492 -19.64213 -18.85983 -18.72348 -18.24123 -17.90551 -16.95526 -16.58173 -16.35623 -15.78625 -15.64028 -15.34658 -15.29768 -15.15079 -14.68909 -14.49587 -14.23924 -14.02721 -13.85346 -13.68402 -13.37585 -13.35333 -13.12421 -13.05372 -12.96565 -12.66199 -12.48554 -12.21095 -12.13287 -12.06626 -11.96687 -11.54841 -11.48989 -10.94467 -10.90232 -10.25521 -10.22567 -9.67375 -9.30626 -8.54874 -8.32423 -6.01135 -0.15049 0.63158 0.92821 1.37480 1.38298 1.50498 1.62134 2.17439 2.28039 2.64037 3.00773 3.17034 3.27029 3.79656 3.96780 4.03155 4.13125 4.18051 4.26383 4.37771 4.45728 4.50381 4.59177 4.62106 4.63111 4.70821 4.77983 4.80555 4.99865 5.05767 5.14879 5.17988 5.18515 5.30110 5.32242 5.40716 5.44436 5.46513 5.54733 5.61791 5.66292 5.85544 6.18309 6.24743 6.47661 6.61302 7.14583 7.23941 7.52627 8.18143 8.67118 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014088 B = 0.003745 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.967860 B = 7474.898094 C = 8869.708058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.132 4.132 3 C 0.101 3.899 4 N -0.445 5.445 5 C -0.332 4.332 6 H 0.058 0.942 7 C 0.006 3.994 8 N -0.885 5.885 9 Si 0.976 3.024 10 H -0.278 1.278 11 H -0.265 1.265 12 H -0.272 1.272 13 C 0.463 3.537 14 O -0.610 6.610 15 C -0.207 4.207 16 C -0.039 4.039 17 C -0.081 4.081 18 C -0.023 4.023 19 C -0.167 4.167 20 C 0.136 3.864 21 N -0.660 5.660 22 C 0.498 3.502 23 C -0.158 4.158 24 O -0.580 6.580 25 C -0.152 4.152 26 C -0.094 4.094 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.040 0.960 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.274 0.726 35 H 0.146 0.854 36 H 0.172 0.828 37 H 0.091 0.909 38 H 0.130 0.870 39 H 0.427 0.573 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.116 0.884 43 H 0.132 0.868 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.015 1.597 -11.578 12.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.171 4.171 3 C -0.022 4.022 4 N -0.162 5.162 5 C -0.461 4.461 6 H 0.076 0.924 7 C -0.197 4.197 8 N -0.522 5.522 9 Si 0.800 3.200 10 H -0.204 1.204 11 H -0.189 1.189 12 H -0.197 1.197 13 C 0.256 3.744 14 O -0.499 6.499 15 C -0.227 4.227 16 C -0.060 4.060 17 C -0.082 4.082 18 C -0.042 4.042 19 C -0.187 4.187 20 C 0.042 3.958 21 N -0.306 5.306 22 C 0.289 3.711 23 C -0.217 4.217 24 O -0.459 6.459 25 C -0.172 4.172 26 C -0.113 4.113 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.164 0.836 36 H 0.190 0.810 37 H 0.110 0.890 38 H 0.148 0.852 39 H 0.266 0.734 40 H 0.127 0.873 41 H 0.119 0.881 42 H 0.135 0.865 43 H 0.149 0.851 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.335 0.957 -11.509 12.722 hybrid contribution 0.206 0.413 1.457 1.528 sum 5.541 1.370 -10.052 11.560 Atomic orbital electron populations 1.21626 0.93199 1.02351 1.02238 1.21895 0.97486 0.96702 1.00989 1.21775 0.80302 0.96530 1.03594 1.43764 1.05974 1.61403 1.05045 1.19294 1.07916 1.26657 0.92226 0.92381 1.26016 0.97118 0.93109 1.03423 1.69895 1.30525 1.17275 1.34555 0.85217 0.78234 0.78634 0.77958 1.20424 1.18896 1.19651 1.17917 0.87965 0.82912 0.85583 1.90703 1.15100 1.56775 1.87276 1.22387 1.01089 1.06742 0.92525 1.22621 0.91948 0.93210 0.98185 1.19078 0.94612 0.96129 0.98358 1.20810 0.95325 0.95423 0.92651 1.20757 0.93325 1.03379 1.01254 1.17823 0.84223 0.96947 0.96842 1.43500 1.03315 1.11900 1.71859 1.22042 0.90177 0.84786 0.74089 1.21914 0.87616 1.05810 1.06352 1.90702 1.84746 1.20958 1.49507 1.21103 0.96177 0.98531 1.01431 1.21271 0.92329 0.99139 0.98545 0.93205 0.91341 0.91271 0.92355 0.94116 0.89089 0.91885 0.91609 0.83620 0.81046 0.89049 0.85210 0.73399 0.87293 0.88052 0.86531 0.85055 0.83926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.91 71.98 0.71 -2.99 16 2 C -0.13 -4.76 6.04 30.59 0.18 -4.58 16 3 C 0.10 4.42 4.54 86.38 0.39 4.81 16 4 N -0.45 -23.22 2.54 -645.41 -1.64 -24.86 16 5 C -0.33 -19.17 8.95 84.13 0.75 -18.41 16 6 H 0.06 3.64 7.72 -2.91 -0.02 3.62 16 7 C 0.01 0.32 4.99 84.97 0.42 0.75 16 8 N -0.88 -47.44 11.25 21.69 0.24 -47.20 16 9 Si 0.98 42.94 29.59 68.60 2.03 44.97 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 13 C 0.46 23.33 6.42 85.12 0.55 23.87 16 14 O -0.61 -34.76 11.94 -4.63 -0.06 -34.81 16 15 C -0.21 -7.98 8.48 22.44 0.19 -7.79 16 16 C -0.04 -1.30 9.80 23.84 0.23 -1.07 16 17 C -0.08 -3.08 4.47 -20.13 -0.09 -3.17 16 18 C -0.02 -0.95 6.65 22.56 0.15 -0.80 16 19 C -0.17 -6.14 9.94 22.35 0.22 -5.92 16 20 C 0.14 4.62 6.33 38.37 0.24 4.86 16 21 N -0.66 -16.32 5.32 -303.39 -1.61 -17.93 16 22 C 0.50 12.65 7.79 87.66 0.68 13.33 16 23 C -0.16 -1.99 10.31 71.24 0.73 -1.25 16 24 O -0.58 -20.82 14.41 -3.05 -0.04 -20.87 16 25 C -0.15 -5.41 8.68 22.34 0.19 -5.22 16 26 C -0.09 -3.28 9.79 22.56 0.22 -3.06 16 27 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 2.00 7.37 -2.39 -0.02 1.99 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 4.42 5.36 -2.39 -0.01 4.41 16 33 H 0.06 2.49 6.52 -2.38 -0.02 2.48 16 34 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 35 H 0.15 4.72 5.87 -2.91 -0.02 4.71 16 36 H 0.17 3.92 8.06 -2.91 -0.02 3.90 16 37 H 0.09 4.23 7.08 -2.91 -0.02 4.21 16 38 H 0.13 4.23 8.06 -2.91 -0.02 4.20 16 39 H 0.43 6.81 8.81 -92.71 -0.82 5.99 16 40 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.13 4.66 6.08 -2.91 -0.02 4.64 16 44 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -78.95 363.73 4.92 -74.03 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: 0.20 Total: 33.31 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 5.79 Total: -6.64 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -3.01 Total: -89.99 kcal Atomic # 8 Polarization: -55.58 SS G_CDS: -0.10 Total: -55.68 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -78.95 4.92 -74.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056484972.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.824 kcal (2) G-P(sol) polarization free energy of solvation -78.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds