Wall clock time and date at job start Tue Mar 31 2020 11:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47099 * 2 1 4 4 N 1.46505 * 109.47393 * 186.20150 * 3 2 1 5 5 C 1.36898 * 119.99712 * 279.28847 * 4 3 2 6 6 H 1.08000 * 119.99564 * 170.41824 * 5 4 3 7 7 C 1.39023 * 120.00132 * 350.41927 * 5 4 3 8 8 N 1.31373 * 120.00169 * 30.15656 * 7 5 4 9 9 Si 1.86808 * 119.99828 * 210.15321 * 7 5 4 10 10 H 1.48497 * 109.46932 * 94.99830 * 9 7 5 11 11 H 1.48497 * 109.46819 * 215.00005 * 9 7 5 12 12 H 1.48496 * 109.47125 * 334.99836 * 9 7 5 13 13 C 1.34774 * 120.00075 * 99.28437 * 4 3 2 14 14 O 1.21619 * 120.00211 * 185.10015 * 13 4 3 15 15 C 1.47489 * 119.99833 * 5.10785 * 13 4 3 16 16 C 1.39828 * 120.24513 * 313.01262 * 15 13 4 17 17 C 1.37346 * 120.07639 * 180.02562 * 16 15 13 18 18 C 1.39965 * 120.48856 * 0.04309 * 17 16 15 19 19 C 1.38874 * 119.25963 * 359.68671 * 18 17 16 20 20 C 1.37726 * 120.64360 * 0.56725 * 19 18 17 21 21 C 1.51252 * 108.49554 * 179.77572 * 19 18 17 22 22 C 1.53741 * 104.51286 * 0.40802 * 21 19 18 23 23 N 1.39394 * 129.13577 * 179.97438 * 18 17 16 24 24 C 1.34781 * 124.91663 * 0.02562 * 23 18 17 25 25 C 1.50701 * 120.00166 * 0.02968 * 24 23 18 26 26 O 1.21280 * 120.00134 * 180.02562 * 24 23 18 27 27 H 1.08998 * 109.47315 * 299.99979 * 1 2 3 28 28 H 1.09007 * 109.46678 * 59.99928 * 1 2 3 29 29 H 1.08998 * 109.46783 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47538 * 240.00484 * 2 1 3 31 31 H 1.08999 * 109.47487 * 120.00027 * 2 1 3 32 32 H 1.09008 * 109.47138 * 66.20369 * 3 2 1 33 33 H 1.08997 * 109.47330 * 306.20217 * 3 2 1 34 34 H 0.97003 * 120.00347 * 180.02562 * 8 7 5 35 35 H 1.08004 * 119.96289 * 0.02562 * 16 15 13 36 36 H 1.07997 * 119.75857 * 180.02562 * 17 16 15 37 37 H 1.07995 * 119.98868 * 179.71807 * 20 19 18 38 38 H 1.09005 * 110.63407 * 241.54832 * 21 19 18 39 39 H 1.09000 * 110.32758 * 119.11369 * 21 19 18 40 40 H 1.09004 * 110.29328 * 240.81890 * 22 21 19 41 41 H 1.09000 * 110.29335 * 118.69694 * 22 21 19 42 42 H 1.09000 * 109.47053 * 59.99585 * 25 24 23 43 43 H 1.09000 * 109.47289 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.46610 * 299.99831 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4974 1.4453 -0.1492 5 6 4.2971 1.2132 0.9374 6 1 5.3580 1.0613 0.8044 7 6 3.7435 1.1730 2.2120 8 7 2.5047 0.7682 2.3777 9 14 4.7612 1.6947 3.6892 10 1 4.4872 3.1207 4.0002 11 1 4.4013 0.8547 4.8596 12 1 6.2038 1.5235 3.3817 13 6 4.0508 1.6762 -1.3562 14 8 5.2551 1.5871 -1.5001 15 6 3.1958 2.0371 -2.5025 16 6 2.0334 1.3079 -2.7714 17 6 1.2401 1.6467 -3.8401 18 6 1.5856 2.7205 -4.6688 19 6 2.7378 3.4458 -4.3951 20 6 3.5420 3.1099 -3.3286 21 6 2.8779 4.5345 -5.4356 22 6 1.6520 4.3572 -6.3463 23 7 0.9211 3.2163 -5.7894 24 6 -0.2273 2.7178 -6.2887 25 6 -0.8872 1.5364 -5.6254 26 8 -0.7296 3.2199 -7.2717 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.7701 1.9233 0.9404 33 1 1.5888 1.9874 -0.8292 34 1 2.1183 0.7405 3.2670 35 1 1.7591 0.4773 -2.1379 36 1 0.3432 1.0803 -4.0428 37 1 4.4381 3.6783 -3.1282 38 1 3.7976 4.4046 -6.0061 39 1 2.8608 5.5159 -4.9615 40 1 1.9675 4.1428 -7.3674 41 1 1.0304 5.2523 -6.3220 42 1 -1.1364 1.7906 -4.5951 43 1 -1.7973 1.2775 -6.1664 44 1 -0.2049 0.6864 -5.6351 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060556103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:49 Heat of formation + Delta-G solvation = -9.116834 kcal Electronic energy + Delta-G solvation = -27010.626715 eV Core-core repulsion = 23315.197227 eV Total energy + Delta-G solvation = -3695.429488 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.22376 -39.30799 -38.21569 -35.82996 -35.44818 -33.26282 -32.46078 -31.49189 -29.94210 -29.64178 -28.83356 -26.00557 -24.91073 -23.39327 -23.16656 -21.58668 -20.78486 -19.95751 -19.29291 -17.21667 -17.08242 -16.72460 -16.50219 -15.88809 -15.24737 -14.71250 -14.65902 -14.48048 -14.29339 -14.04335 -13.79100 -13.50052 -13.24239 -12.74227 -12.66535 -12.52031 -12.44697 -12.25671 -12.07474 -11.96963 -11.86424 -11.82353 -11.45160 -11.01117 -10.91918 -10.62111 -10.45900 -10.34257 -10.26938 -10.25657 -10.01769 -9.70244 -8.80236 -8.63676 -8.50578 -7.92584 -7.63995 -6.51208 -3.82205 1.18219 1.55565 2.44339 2.64719 3.09583 3.22014 3.27101 3.62002 4.00124 4.17737 4.19097 4.45384 4.62256 4.80819 4.89955 4.94636 4.99375 5.04881 5.15761 5.29308 5.31428 5.49297 5.54572 5.62056 5.65657 5.73271 5.81514 5.88595 5.93666 6.08817 6.16638 6.20311 6.33151 6.43023 6.52807 6.57917 6.76574 6.79050 6.86535 7.02371 7.25388 7.35656 7.42424 7.71495 7.78491 8.01537 8.41766 9.08174 9.32611 9.91316 10.45165 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.003828 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.029134 B = 7312.482967 C = 8313.759917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.130 4.130 3 C 0.112 3.888 4 N -0.426 5.426 5 C -0.310 4.310 6 H 0.108 0.892 7 C 0.039 3.961 8 N -0.848 5.848 9 Si 0.914 3.086 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.469 3.531 14 O -0.593 6.593 15 C -0.102 4.102 16 C -0.077 4.077 17 C -0.166 4.166 18 C 0.134 3.866 19 C -0.140 4.140 20 C -0.038 4.038 21 C -0.084 4.084 22 C 0.108 3.892 23 N -0.550 5.550 24 C 0.523 3.477 25 C -0.181 4.181 26 O -0.535 6.535 27 H 0.054 0.946 28 H 0.037 0.963 29 H 0.042 0.958 30 H 0.034 0.966 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.045 0.955 34 H 0.269 0.731 35 H 0.149 0.851 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.281 2.955 -9.737 12.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C -0.011 4.011 4 N -0.142 5.142 5 C -0.437 4.437 6 H 0.126 0.874 7 C -0.166 4.166 8 N -0.486 5.486 9 Si 0.740 3.260 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.258 3.742 14 O -0.479 6.479 15 C -0.107 4.107 16 C -0.095 4.095 17 C -0.186 4.186 18 C 0.038 3.962 19 C -0.143 4.143 20 C -0.057 4.057 21 C -0.121 4.121 22 C -0.014 4.014 23 N -0.273 5.273 24 C 0.315 3.685 25 C -0.240 4.240 26 O -0.411 6.411 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.128 0.872 32 H 0.119 0.881 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.166 0.834 36 H 0.154 0.846 37 H 0.148 0.852 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.117 0.883 43 H 0.113 0.887 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.240 3.141 -10.247 12.934 hybrid contribution 0.263 0.202 0.808 0.873 sum -6.977 3.343 -9.439 12.205 Atomic orbital electron populations 1.21650 0.97300 1.00190 1.00688 1.22069 0.93767 0.98227 1.02668 1.21949 0.80273 0.97081 1.01796 1.43767 1.05886 1.57697 1.06816 1.19731 0.93282 1.47331 0.83326 0.87382 1.25247 0.96333 0.96006 0.98974 1.70146 1.15173 1.39717 1.23598 0.86112 0.80736 0.78944 0.80233 1.20318 1.21089 1.19204 1.17612 0.87497 0.86459 0.82613 1.90622 1.14664 1.58969 1.83686 1.20138 0.95940 0.96905 0.97705 1.21726 0.92684 0.99510 0.95628 1.20969 1.02765 0.98229 0.96637 1.18380 0.93139 0.95957 0.88686 1.19797 0.96349 0.99404 0.98773 1.20369 0.98034 0.95493 0.91840 1.21100 0.97940 0.98331 0.94766 1.22024 0.92696 0.88615 0.98077 1.45838 1.23040 1.31376 1.27050 1.20761 0.78992 0.84957 0.83822 1.22302 1.02358 0.96360 1.02943 1.90722 1.62954 1.61287 1.26168 0.92703 0.94356 0.93891 0.94783 0.87153 0.88118 0.93679 0.92026 0.83414 0.84608 0.85208 0.89097 0.89148 0.90108 0.90099 0.88250 0.88665 0.88325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.91 37.16 0.37 -1.78 16 2 C -0.13 -2.47 4.83 -26.73 -0.13 -2.60 16 3 C 0.11 2.34 4.17 -4.04 -0.02 2.32 16 4 N -0.43 -10.34 2.64 -116.01 -0.31 -10.65 16 5 C -0.31 -8.14 9.33 -15.00 -0.14 -8.28 16 6 H 0.11 3.05 7.34 -52.49 -0.39 2.66 16 7 C 0.04 0.95 5.09 -17.46 -0.09 0.86 16 8 N -0.85 -19.88 8.04 55.50 0.45 -19.43 16 9 Si 0.91 19.42 29.65 -169.99 -5.04 14.38 16 10 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 12 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 13 C 0.47 11.28 7.20 -12.49 -0.09 11.19 16 14 O -0.59 -16.36 16.61 5.26 0.09 -16.28 16 15 C -0.10 -1.97 5.02 -104.97 -0.53 -2.50 16 16 C -0.08 -1.25 7.40 -39.31 -0.29 -1.54 16 17 C -0.17 -2.25 8.84 -39.26 -0.35 -2.59 16 18 C 0.13 1.85 6.60 -83.54 -0.55 1.30 16 19 C -0.14 -1.99 6.21 -104.30 -0.65 -2.64 16 20 C -0.04 -0.64 9.70 -39.20 -0.38 -1.02 16 21 C -0.08 -0.89 6.94 -27.23 -0.19 -1.08 16 22 C 0.11 1.17 7.05 -3.66 -0.03 1.14 16 23 N -0.55 -7.06 3.12 -112.86 -0.35 -7.41 16 24 C 0.52 6.77 7.91 -10.98 -0.09 6.69 16 25 C -0.18 -1.66 8.14 36.01 0.29 -1.36 16 26 O -0.53 -8.50 17.37 5.56 0.10 -8.40 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.03 0.64 6.18 -51.93 -0.32 0.32 16 31 H 0.11 2.45 5.98 -51.93 -0.31 2.14 16 32 H 0.10 2.28 5.90 -51.92 -0.31 1.98 16 33 H 0.05 0.85 5.08 -51.93 -0.26 0.59 16 34 H 0.27 5.99 8.31 -40.82 -0.34 5.65 16 35 H 0.15 2.43 3.94 -52.48 -0.21 2.22 16 36 H 0.14 1.43 4.15 -52.49 -0.22 1.21 16 37 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.10 0.81 6.90 -51.93 -0.36 0.45 16 43 H 0.09 0.76 8.12 -51.93 -0.42 0.34 16 44 H 0.10 0.80 6.89 -51.93 -0.36 0.44 16 LS Contribution 346.92 15.07 5.23 5.23 Total: -1.00 -30.53 346.92 -8.36 -38.89 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -5.67 Total: 5.56 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -2.85 Total: -1.88 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: -0.21 Total: -37.49 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: 0.18 Total: -24.68 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.04 Total: 14.38 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.53 -8.36 -38.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060556103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.768 kcal (2) G-P(sol) polarization free energy of solvation -30.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds