Wall clock time and date at job start Tue Mar 31 2020 11:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47099 * 2 1 4 4 N 1.46505 * 109.47393 * 186.20150 * 3 2 1 5 5 C 1.36898 * 119.99712 * 279.28847 * 4 3 2 6 6 H 1.08000 * 119.99564 * 170.41824 * 5 4 3 7 7 C 1.39023 * 120.00132 * 350.41927 * 5 4 3 8 8 N 1.31373 * 120.00169 * 30.15656 * 7 5 4 9 9 Si 1.86808 * 119.99828 * 210.15321 * 7 5 4 10 10 H 1.48497 * 109.46932 * 94.99830 * 9 7 5 11 11 H 1.48497 * 109.46819 * 215.00005 * 9 7 5 12 12 H 1.48496 * 109.47125 * 334.99836 * 9 7 5 13 13 C 1.34774 * 120.00075 * 99.28437 * 4 3 2 14 14 O 1.21619 * 120.00211 * 185.10015 * 13 4 3 15 15 C 1.47489 * 119.99833 * 5.10785 * 13 4 3 16 16 C 1.39828 * 120.24513 * 313.01262 * 15 13 4 17 17 C 1.37346 * 120.07639 * 180.02562 * 16 15 13 18 18 C 1.39965 * 120.48856 * 0.04309 * 17 16 15 19 19 C 1.38874 * 119.25963 * 359.68671 * 18 17 16 20 20 C 1.37726 * 120.64360 * 0.56725 * 19 18 17 21 21 C 1.51252 * 108.49554 * 179.77572 * 19 18 17 22 22 C 1.53741 * 104.51286 * 0.40802 * 21 19 18 23 23 N 1.39394 * 129.13577 * 179.97438 * 18 17 16 24 24 C 1.34781 * 124.91663 * 0.02562 * 23 18 17 25 25 C 1.50701 * 120.00166 * 0.02968 * 24 23 18 26 26 O 1.21280 * 120.00134 * 180.02562 * 24 23 18 27 27 H 1.08998 * 109.47315 * 299.99979 * 1 2 3 28 28 H 1.09007 * 109.46678 * 59.99928 * 1 2 3 29 29 H 1.08998 * 109.46783 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47538 * 240.00484 * 2 1 3 31 31 H 1.08999 * 109.47487 * 120.00027 * 2 1 3 32 32 H 1.09008 * 109.47138 * 66.20369 * 3 2 1 33 33 H 1.08997 * 109.47330 * 306.20217 * 3 2 1 34 34 H 0.97003 * 120.00347 * 180.02562 * 8 7 5 35 35 H 1.08004 * 119.96289 * 0.02562 * 16 15 13 36 36 H 1.07997 * 119.75857 * 180.02562 * 17 16 15 37 37 H 1.07995 * 119.98868 * 179.71807 * 20 19 18 38 38 H 1.09005 * 110.63407 * 241.54832 * 21 19 18 39 39 H 1.09000 * 110.32758 * 119.11369 * 21 19 18 40 40 H 1.09004 * 110.29328 * 240.81890 * 22 21 19 41 41 H 1.09000 * 110.29335 * 118.69694 * 22 21 19 42 42 H 1.09000 * 109.47053 * 59.99585 * 25 24 23 43 43 H 1.09000 * 109.47289 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.46610 * 299.99831 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4974 1.4453 -0.1492 5 6 4.2971 1.2132 0.9374 6 1 5.3580 1.0613 0.8044 7 6 3.7435 1.1730 2.2120 8 7 2.5047 0.7682 2.3777 9 14 4.7612 1.6947 3.6892 10 1 4.4872 3.1207 4.0002 11 1 4.4013 0.8547 4.8596 12 1 6.2038 1.5235 3.3817 13 6 4.0508 1.6762 -1.3562 14 8 5.2551 1.5871 -1.5001 15 6 3.1958 2.0371 -2.5025 16 6 2.0334 1.3079 -2.7714 17 6 1.2401 1.6467 -3.8401 18 6 1.5856 2.7205 -4.6688 19 6 2.7378 3.4458 -4.3951 20 6 3.5420 3.1099 -3.3286 21 6 2.8779 4.5345 -5.4356 22 6 1.6520 4.3572 -6.3463 23 7 0.9211 3.2163 -5.7894 24 6 -0.2273 2.7178 -6.2887 25 6 -0.8872 1.5364 -5.6254 26 8 -0.7296 3.2199 -7.2717 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.7701 1.9233 0.9404 33 1 1.5888 1.9874 -0.8292 34 1 2.1183 0.7405 3.2670 35 1 1.7591 0.4773 -2.1379 36 1 0.3432 1.0803 -4.0428 37 1 4.4381 3.6783 -3.1282 38 1 3.7976 4.4046 -6.0061 39 1 2.8608 5.5159 -4.9615 40 1 1.9675 4.1428 -7.3674 41 1 1.0304 5.2523 -6.3220 42 1 -1.1364 1.7906 -4.5951 43 1 -1.7973 1.2775 -6.1664 44 1 -0.2049 0.6864 -5.6351 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060556103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:49 Heat of formation + Delta-G solvation = -26.224749 kcal Electronic energy + Delta-G solvation = -27011.368570 eV Core-core repulsion = 23315.197227 eV Total energy + Delta-G solvation = -3696.171343 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.30555 -40.82015 -39.50540 -37.29756 -37.04201 -34.35131 -34.06938 -33.23057 -31.07082 -30.76619 -29.79696 -27.67130 -26.50890 -24.60415 -24.28876 -22.77821 -22.30924 -21.09279 -20.79890 -18.85704 -18.28341 -18.21744 -17.44157 -17.19865 -16.92366 -16.10626 -15.89052 -15.75418 -15.56534 -15.39630 -15.25791 -14.90973 -14.65225 -13.95432 -13.90770 -13.73658 -13.52962 -13.45837 -13.30579 -13.21321 -12.98588 -12.89685 -12.85863 -12.61446 -12.47485 -12.13909 -12.00153 -11.91928 -11.73776 -11.40463 -11.27229 -11.16645 -10.60667 -10.37117 -9.88629 -9.71597 -8.82202 -8.37849 -5.78775 -0.06156 0.36074 1.32276 1.43749 1.45472 1.54229 1.68310 2.05679 2.26703 2.74107 2.93501 3.14928 3.27611 3.49468 3.72902 3.88681 4.00290 4.11026 4.24208 4.29051 4.39382 4.42166 4.45403 4.51137 4.59811 4.60324 4.71948 4.80099 4.91315 4.94316 4.96641 5.01594 5.09535 5.12477 5.26416 5.30520 5.31736 5.40996 5.50386 5.54605 5.69405 5.80923 6.05224 6.09616 6.31874 6.55333 6.80430 7.18059 7.47776 8.06569 8.55829 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.003828 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.029134 B = 7312.482967 C = 8313.759917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.122 4.122 3 C 0.118 3.882 4 N -0.435 5.435 5 C -0.358 4.358 6 H 0.071 0.929 7 C 0.020 3.980 8 N -0.843 5.843 9 Si 0.971 3.029 10 H -0.272 1.272 11 H -0.270 1.270 12 H -0.281 1.281 13 C 0.456 3.544 14 O -0.647 6.647 15 C -0.133 4.133 16 C -0.078 4.078 17 C -0.151 4.151 18 C 0.144 3.856 19 C -0.139 4.139 20 C -0.047 4.047 21 C -0.079 4.079 22 C 0.101 3.899 23 N -0.552 5.552 24 C 0.519 3.481 25 C -0.181 4.181 26 O -0.567 6.567 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.035 0.965 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.277 0.723 35 H 0.147 0.853 36 H 0.175 0.825 37 H 0.120 0.880 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.116 0.884 43 H 0.107 0.893 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.122 3.257 -10.783 15.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.160 4.160 3 C -0.004 4.004 4 N -0.150 5.150 5 C -0.485 4.485 6 H 0.089 0.911 7 C -0.186 4.186 8 N -0.479 5.479 9 Si 0.795 3.205 10 H -0.197 1.197 11 H -0.195 1.195 12 H -0.207 1.207 13 C 0.248 3.752 14 O -0.537 6.537 15 C -0.137 4.137 16 C -0.096 4.096 17 C -0.170 4.170 18 C 0.048 3.952 19 C -0.142 4.142 20 C -0.067 4.067 21 C -0.116 4.116 22 C -0.020 4.020 23 N -0.274 5.274 24 C 0.312 3.688 25 C -0.240 4.240 26 O -0.446 6.446 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.165 0.835 36 H 0.192 0.808 37 H 0.138 0.862 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.134 0.866 43 H 0.126 0.874 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.140 3.437 -11.282 15.554 hybrid contribution 1.095 0.133 1.035 1.513 sum -9.045 3.571 -10.247 14.127 Atomic orbital electron populations 1.21571 0.93855 1.01719 1.01719 1.21908 0.96649 0.96406 1.01042 1.21979 0.78505 0.98448 1.01497 1.43962 1.07133 1.57348 1.06509 1.19486 0.92325 1.51477 0.85258 0.91076 1.25777 0.97615 0.95006 1.00164 1.70215 1.15376 1.37781 1.24485 0.85287 0.78649 0.78823 0.77750 1.19709 1.19458 1.20657 1.18432 0.87543 0.85522 0.83753 1.90552 1.17208 1.61143 1.84844 1.19828 0.97232 0.99431 0.97221 1.21657 0.92017 0.99199 0.96772 1.21253 1.03075 0.97840 0.94876 1.18508 0.92690 0.95422 0.88561 1.20024 0.95710 1.00247 0.98173 1.20296 0.98396 0.95296 0.92686 1.21209 0.98678 0.97913 0.93801 1.22223 0.92707 0.88537 0.98495 1.46008 1.23188 1.31676 1.26545 1.21487 0.78558 0.85386 0.83342 1.22406 1.02941 0.95019 1.03586 1.90715 1.63659 1.62497 1.27714 0.93289 0.91660 0.92133 0.94693 0.90541 0.90131 0.91509 0.91257 0.83531 0.80809 0.86237 0.87483 0.87356 0.89190 0.89098 0.86591 0.87389 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 9.91 71.98 0.71 -2.94 16 2 C -0.12 -4.61 4.83 30.59 0.15 -4.46 16 3 C 0.12 4.97 4.17 86.38 0.36 5.33 16 4 N -0.43 -22.19 2.64 -639.18 -1.69 -23.88 16 5 C -0.36 -20.01 9.33 84.09 0.78 -19.22 16 6 H 0.07 4.39 7.34 -2.91 -0.02 4.37 16 7 C 0.02 1.00 5.09 84.95 0.43 1.44 16 8 N -0.84 -39.81 8.04 21.68 0.17 -39.64 16 9 Si 0.97 40.68 29.65 68.60 2.03 42.71 16 10 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 11 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 13 C 0.46 23.26 7.20 86.68 0.62 23.89 16 14 O -0.65 -38.50 16.61 -4.09 -0.07 -38.57 16 15 C -0.13 -5.21 5.02 -20.09 -0.10 -5.31 16 16 C -0.08 -2.42 7.40 22.44 0.17 -2.26 16 17 C -0.15 -3.56 8.84 22.48 0.20 -3.36 16 18 C 0.14 3.53 6.60 38.51 0.25 3.79 16 19 C -0.14 -3.67 6.21 -19.66 -0.12 -3.79 16 20 C -0.05 -1.60 9.70 22.51 0.22 -1.38 16 21 C -0.08 -1.45 6.94 30.27 0.21 -1.24 16 22 C 0.10 1.89 7.05 86.63 0.61 2.50 16 23 N -0.55 -12.27 3.12 -629.38 -1.96 -14.23 16 24 C 0.52 11.63 7.91 87.66 0.69 12.32 16 25 C -0.18 -2.49 8.14 71.24 0.58 -1.91 16 26 O -0.57 -16.54 17.37 -3.03 -0.05 -16.60 16 27 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.03 1.30 6.18 -2.39 -0.01 1.28 16 31 H 0.08 3.44 5.98 -2.39 -0.01 3.42 16 32 H 0.08 3.70 5.90 -2.38 -0.01 3.68 16 33 H 0.07 2.49 5.08 -2.39 -0.01 2.48 16 34 H 0.28 12.16 8.31 -92.71 -0.77 11.39 16 35 H 0.15 4.59 3.94 -2.91 -0.01 4.58 16 36 H 0.17 2.73 4.15 -2.91 -0.01 2.72 16 37 H 0.12 4.20 8.06 -2.91 -0.02 4.18 16 38 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 41 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.12 1.26 6.90 -2.39 -0.02 1.24 16 43 H 0.11 1.27 8.12 -2.39 -0.02 1.25 16 44 H 0.11 1.27 6.89 -2.39 -0.02 1.25 16 Total: -1.00 -71.51 346.92 5.24 -66.27 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 1.04 Total: 20.53 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 5.77 Total: 3.40 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -3.48 Total: -77.75 kcal Atomic # 8 Polarization: -55.04 SS G_CDS: -0.12 Total: -55.16 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -71.51 5.24 -66.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060556103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.044 kcal (2) G-P(sol) polarization free energy of solvation -71.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds