Wall clock time and date at job start Tue Mar 31 2020 11:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47178 * 2 1 4 4 N 1.46510 * 109.47156 * 179.97438 * 3 2 1 5 5 C 1.36887 * 119.99753 * 312.58944 * 4 3 2 6 6 H 1.08002 * 120.00023 * 41.74391 * 5 4 3 7 7 C 1.39029 * 119.99898 * 221.73253 * 5 4 3 8 8 N 1.31382 * 119.99913 * 73.40941 * 7 5 4 9 9 Si 1.86796 * 120.00096 * 253.40819 * 7 5 4 10 10 H 1.48503 * 109.47552 * 90.00188 * 9 7 5 11 11 H 1.48503 * 109.47142 * 209.99896 * 9 7 5 12 12 H 1.48503 * 109.47603 * 329.99933 * 9 7 5 13 13 C 1.34779 * 119.99754 * 132.59031 * 4 3 2 14 14 O 1.21619 * 119.99785 * 159.69069 * 13 4 3 15 15 C 1.47486 * 120.00211 * 339.69473 * 13 4 3 16 16 C 1.39808 * 120.07927 * 151.76962 * 15 13 4 17 17 C 1.37648 * 119.91871 * 179.74694 * 16 15 13 18 18 C 1.39154 * 120.07982 * 0.25102 * 17 16 15 19 19 N 1.39449 * 119.92096 * 180.02562 * 18 17 16 20 20 C 1.34778 * 119.99781 * 34.23661 * 19 18 17 21 21 O 1.21274 * 120.00378 * 3.23395 * 20 19 18 22 22 C 1.50705 * 119.99802 * 183.23596 * 20 19 18 23 23 C 1.52999 * 117.49823 * 248.62674 * 22 20 19 24 24 C 1.52991 * 117.49988 * 180.02562 * 22 20 19 25 25 C 1.39142 * 120.15778 * 359.97438 * 18 17 16 26 26 C 1.37649 * 120.08163 * 0.02562 * 25 18 17 27 27 H 1.08997 * 109.46566 * 60.00327 * 1 2 3 28 28 H 1.09000 * 109.47171 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46807 * 300.00067 * 1 2 3 30 30 H 1.08998 * 109.47476 * 239.99589 * 2 1 3 31 31 H 1.09008 * 109.47044 * 119.99666 * 2 1 3 32 32 H 1.08998 * 109.47306 * 60.00238 * 3 2 1 33 33 H 1.08997 * 109.47104 * 299.99343 * 3 2 1 34 34 H 0.96997 * 120.00006 * 184.93700 * 8 7 5 35 35 H 1.07994 * 120.04041 * 0.02562 * 16 15 13 36 36 H 1.08002 * 119.96195 * 180.27584 * 17 16 15 37 37 H 0.96997 * 119.99857 * 214.24429 * 19 18 17 38 38 H 1.09004 * 115.54917 * 34.32504 * 22 20 19 39 39 H 1.09001 * 117.49832 * 359.97438 * 23 22 20 40 40 H 1.08996 * 117.50200 * 145.01602 * 23 22 20 41 41 H 1.09005 * 117.49919 * 214.97690 * 24 22 20 42 42 H 1.08999 * 117.50023 * 359.97028 * 24 22 20 43 43 H 1.08004 * 119.95841 * 180.02562 * 25 18 17 44 44 H 1.08010 * 120.03947 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1891 0.6403 0.8738 6 1 3.8546 -0.3708 1.0536 7 6 5.3145 1.1271 1.5291 8 7 5.1817 1.9962 2.5054 9 14 7.0155 0.5454 1.0215 10 1 7.5498 1.4407 -0.0360 11 1 7.9204 0.5747 2.1986 12 1 6.9287 -0.8417 0.4983 13 6 4.1793 2.2323 -0.8586 14 8 5.3387 2.5236 -0.6348 15 6 3.5111 2.7433 -2.0700 16 6 3.9161 3.9565 -2.6347 17 6 3.2937 4.4278 -3.7683 18 6 2.2590 3.7009 -4.3493 19 7 1.6312 4.1812 -5.4981 20 6 2.3405 4.8645 -6.4181 21 8 3.5359 5.0112 -6.2759 22 6 1.6481 5.4464 -7.6236 23 6 1.9625 4.8264 -8.9865 24 6 2.5083 6.2106 -8.6319 25 6 1.8502 2.4954 -3.7874 26 6 2.4681 2.0180 -2.6538 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 5.9681 2.3899 2.9145 35 1 4.7193 4.5209 -2.1846 36 1 3.6089 5.3627 -4.2077 37 1 0.6839 4.0236 -5.6349 38 1 0.6322 5.8038 -7.4552 39 1 2.6705 3.9980 -9.0114 40 1 1.1535 4.7759 -9.7152 41 1 2.0584 7.0711 -9.1272 42 1 3.5749 6.2930 -8.4232 43 1 1.0472 1.9337 -4.2412 44 1 2.1505 1.0819 -2.2183 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060556210.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:25 Heat of formation + Delta-G solvation = 14.211505 kcal Electronic energy + Delta-G solvation = -26143.216944 eV Core-core repulsion = 22448.799048 eV Total energy + Delta-G solvation = -3694.417895 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.70948 -39.29749 -37.73067 -36.31561 -35.19723 -34.67552 -32.83445 -31.51169 -30.63184 -29.64372 -25.95506 -25.56152 -24.31229 -22.82024 -22.63485 -22.09753 -20.75359 -20.18050 -19.63942 -17.94066 -17.45722 -17.13134 -15.96221 -15.58215 -15.32061 -15.07787 -14.60836 -14.54745 -14.30872 -13.97450 -13.78065 -13.30211 -13.18671 -12.98906 -12.81956 -12.60299 -12.33922 -12.10165 -11.92056 -11.86454 -11.51930 -11.22223 -11.07909 -11.00918 -10.90886 -10.79573 -10.58641 -10.34188 -10.21930 -9.99099 -9.95340 -9.84717 -8.59302 -8.49746 -8.05456 -7.76597 -7.63928 -6.52349 -3.57903 1.28097 1.73521 2.30216 2.84948 3.47062 3.48446 3.60584 3.72913 3.83746 4.27139 4.31600 4.42216 4.50122 4.57850 4.73622 4.86786 4.98965 5.15112 5.21827 5.23705 5.36535 5.48402 5.53940 5.56542 5.67355 5.70825 5.74289 5.77281 5.79173 5.98041 6.07232 6.27308 6.32692 6.36780 6.41322 6.46240 6.53962 6.73092 6.82291 6.92707 6.98997 7.25116 7.30185 7.47439 7.98787 8.25417 8.90430 9.19179 9.59638 10.21556 10.30629 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.017453 B = 0.003369 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.883609 B = 8309.418696 C = 9474.614644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C 0.087 3.913 4 N -0.419 5.419 5 C -0.469 4.469 6 H 0.093 0.907 7 C 0.177 3.823 8 N -0.743 5.743 9 Si 0.853 3.147 10 H -0.259 1.259 11 H -0.304 1.304 12 H -0.273 1.273 13 C 0.478 3.522 14 O -0.560 6.560 15 C -0.105 4.105 16 C -0.062 4.062 17 C -0.126 4.126 18 C 0.135 3.865 19 N -0.666 5.666 20 C 0.538 3.462 21 O -0.517 6.517 22 C -0.195 4.195 23 C -0.152 4.152 24 C -0.147 4.147 25 C -0.152 4.152 26 C -0.085 4.085 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.270 0.730 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.409 0.591 38 H 0.126 0.874 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.123 0.877 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.879 4.711 -17.305 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C -0.036 4.036 4 N -0.137 5.137 5 C -0.586 4.586 6 H 0.110 0.890 7 C -0.050 4.050 8 N -0.367 5.367 9 Si 0.677 3.323 10 H -0.184 1.184 11 H -0.232 1.232 12 H -0.198 1.198 13 C 0.269 3.731 14 O -0.445 6.445 15 C -0.110 4.110 16 C -0.082 4.082 17 C -0.146 4.146 18 C 0.041 3.959 19 N -0.310 5.310 20 C 0.326 3.674 21 O -0.392 6.392 22 C -0.217 4.217 23 C -0.190 4.190 24 C -0.184 4.184 25 C -0.172 4.172 26 C -0.104 4.104 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.244 0.756 38 H 0.144 0.856 39 H 0.119 0.881 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.141 0.859 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.480 5.080 -16.872 21.592 hybrid contribution 0.126 -0.199 -0.172 0.291 sum -12.355 4.881 -17.044 21.610 Atomic orbital electron populations 1.21739 0.96628 1.00941 1.01287 1.21743 0.94136 0.98125 1.02963 1.22059 0.84264 0.96288 1.00997 1.43175 1.02825 1.37927 1.29811 1.18245 1.14118 0.94807 1.31459 0.88979 1.25092 1.01113 0.91297 0.87499 1.70807 1.33463 1.21856 1.10552 0.87414 0.84856 0.80203 0.79845 1.18393 1.23244 1.19820 1.18069 0.86532 0.85151 0.83322 1.90574 1.18340 1.59337 1.76221 1.20549 0.96373 0.95581 0.98466 1.21161 0.98184 0.94755 0.94091 1.20989 0.97400 1.00580 0.95676 1.17734 0.96766 0.93775 0.87578 1.43279 1.12993 1.55286 1.19448 1.19813 0.86982 0.77714 0.82918 1.90749 1.14643 1.57328 1.76439 1.22174 1.01712 1.07824 0.89955 1.22964 1.03669 0.97777 0.94579 1.22972 1.00817 0.95164 0.99437 1.20715 1.03349 0.94676 0.98508 1.21409 0.94388 1.00224 0.94411 0.93303 0.93197 0.92910 0.92371 0.90558 0.93142 0.90887 0.91847 0.85114 0.85102 0.75552 0.85585 0.88093 0.87638 0.87770 0.87235 0.85899 0.84305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.57 16 2 C -0.13 -2.23 5.24 -26.73 -0.14 -2.37 16 3 C 0.09 1.72 4.93 -4.04 -0.02 1.70 16 4 N -0.42 -10.49 2.84 -116.01 -0.33 -10.82 16 5 C -0.47 -12.93 8.53 -15.00 -0.13 -13.06 16 6 H 0.09 2.50 6.75 -52.49 -0.35 2.15 16 7 C 0.18 5.05 3.81 -17.45 -0.07 4.98 16 8 N -0.74 -21.35 13.95 55.50 0.77 -20.58 16 9 Si 0.85 22.64 27.84 -169.99 -4.73 17.91 16 10 H -0.26 -7.39 6.84 56.52 0.39 -7.00 16 11 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 12 H -0.27 -7.11 7.11 56.52 0.40 -6.70 16 13 C 0.48 12.32 7.15 -12.49 -0.09 12.23 16 14 O -0.56 -16.55 13.15 5.26 0.07 -16.48 16 15 C -0.11 -2.20 5.38 -104.95 -0.56 -2.77 16 16 C -0.06 -1.22 9.58 -39.21 -0.38 -1.60 16 17 C -0.13 -2.16 8.63 -39.46 -0.34 -2.50 16 18 C 0.14 1.97 6.27 -83.72 -0.53 1.44 16 19 N -0.67 -7.24 5.32 -9.85 -0.05 -7.29 16 20 C 0.54 6.40 7.37 -10.98 -0.08 6.32 16 21 O -0.52 -8.39 13.89 5.56 0.08 -8.31 16 22 C -0.20 -1.51 6.19 -91.77 -0.57 -2.08 16 23 C -0.15 -1.01 10.23 -26.76 -0.27 -1.28 16 24 C -0.15 -1.09 10.04 -26.76 -0.27 -1.35 16 25 C -0.15 -2.13 9.94 -39.46 -0.39 -2.52 16 26 C -0.09 -1.45 7.41 -39.21 -0.29 -1.74 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.97 7.43 -51.93 -0.39 0.58 16 31 H 0.08 1.45 6.80 -51.92 -0.35 1.09 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.29 4.15 -51.93 -0.22 1.07 16 34 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.13 2.66 7.89 -52.49 -0.41 2.25 16 36 H 0.13 2.22 6.40 -52.49 -0.34 1.89 16 37 H 0.41 2.85 8.81 -40.82 -0.36 2.49 16 38 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.11 1.02 7.67 -51.93 -0.40 0.63 16 43 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 44 H 0.14 2.27 5.09 -52.48 -0.27 2.01 16 LS Contribution 361.17 15.07 5.44 5.44 Total: -1.00 -34.96 361.17 -8.55 -43.50 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.04 Total: 2.79 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -3.76 Total: -6.17 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.39 Total: -38.68 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: 0.15 Total: -24.79 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.73 Total: 17.91 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.96 -8.55 -43.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060556210.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.712 kcal (2) G-P(sol) polarization free energy of solvation -34.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds