Wall clock time and date at job start Tue Mar 31 2020 11:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47178 * 2 1 4 4 N 1.46510 * 109.47156 * 179.97438 * 3 2 1 5 5 C 1.36887 * 119.99753 * 312.58944 * 4 3 2 6 6 H 1.08002 * 120.00023 * 41.74391 * 5 4 3 7 7 C 1.39029 * 119.99898 * 221.73253 * 5 4 3 8 8 N 1.31382 * 119.99913 * 73.40941 * 7 5 4 9 9 Si 1.86796 * 120.00096 * 253.40819 * 7 5 4 10 10 H 1.48503 * 109.47552 * 90.00188 * 9 7 5 11 11 H 1.48503 * 109.47142 * 209.99896 * 9 7 5 12 12 H 1.48503 * 109.47603 * 329.99933 * 9 7 5 13 13 C 1.34779 * 119.99754 * 132.59031 * 4 3 2 14 14 O 1.21619 * 119.99785 * 159.69069 * 13 4 3 15 15 C 1.47486 * 120.00211 * 339.69473 * 13 4 3 16 16 C 1.39808 * 120.07927 * 151.76962 * 15 13 4 17 17 C 1.37648 * 119.91871 * 179.74694 * 16 15 13 18 18 C 1.39154 * 120.07982 * 0.25102 * 17 16 15 19 19 N 1.39449 * 119.92096 * 180.02562 * 18 17 16 20 20 C 1.34778 * 119.99781 * 34.23661 * 19 18 17 21 21 O 1.21274 * 120.00378 * 3.23395 * 20 19 18 22 22 C 1.50705 * 119.99802 * 183.23596 * 20 19 18 23 23 C 1.52999 * 117.49823 * 248.62674 * 22 20 19 24 24 C 1.52991 * 117.49988 * 180.02562 * 22 20 19 25 25 C 1.39142 * 120.15778 * 359.97438 * 18 17 16 26 26 C 1.37649 * 120.08163 * 0.02562 * 25 18 17 27 27 H 1.08997 * 109.46566 * 60.00327 * 1 2 3 28 28 H 1.09000 * 109.47171 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46807 * 300.00067 * 1 2 3 30 30 H 1.08998 * 109.47476 * 239.99589 * 2 1 3 31 31 H 1.09008 * 109.47044 * 119.99666 * 2 1 3 32 32 H 1.08998 * 109.47306 * 60.00238 * 3 2 1 33 33 H 1.08997 * 109.47104 * 299.99343 * 3 2 1 34 34 H 0.96997 * 120.00006 * 184.93700 * 8 7 5 35 35 H 1.07994 * 120.04041 * 0.02562 * 16 15 13 36 36 H 1.08002 * 119.96195 * 180.27584 * 17 16 15 37 37 H 0.96997 * 119.99857 * 214.24429 * 19 18 17 38 38 H 1.09004 * 115.54917 * 34.32504 * 22 20 19 39 39 H 1.09001 * 117.49832 * 359.97438 * 23 22 20 40 40 H 1.08996 * 117.50200 * 145.01602 * 23 22 20 41 41 H 1.09005 * 117.49919 * 214.97690 * 24 22 20 42 42 H 1.08999 * 117.50023 * 359.97028 * 24 22 20 43 43 H 1.08004 * 119.95841 * 180.02562 * 25 18 17 44 44 H 1.08010 * 120.03947 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1891 0.6403 0.8738 6 1 3.8546 -0.3708 1.0536 7 6 5.3145 1.1271 1.5291 8 7 5.1817 1.9962 2.5054 9 14 7.0155 0.5454 1.0215 10 1 7.5498 1.4407 -0.0360 11 1 7.9204 0.5747 2.1986 12 1 6.9287 -0.8417 0.4983 13 6 4.1793 2.2323 -0.8586 14 8 5.3387 2.5236 -0.6348 15 6 3.5111 2.7433 -2.0700 16 6 3.9161 3.9565 -2.6347 17 6 3.2937 4.4278 -3.7683 18 6 2.2590 3.7009 -4.3493 19 7 1.6312 4.1812 -5.4981 20 6 2.3405 4.8645 -6.4181 21 8 3.5359 5.0112 -6.2759 22 6 1.6481 5.4464 -7.6236 23 6 1.9625 4.8264 -8.9865 24 6 2.5083 6.2106 -8.6319 25 6 1.8502 2.4954 -3.7874 26 6 2.4681 2.0180 -2.6538 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 5.9681 2.3899 2.9145 35 1 4.7193 4.5209 -2.1846 36 1 3.6089 5.3627 -4.2077 37 1 0.6839 4.0236 -5.6349 38 1 0.6322 5.8038 -7.4552 39 1 2.6705 3.9980 -9.0114 40 1 1.1535 4.7759 -9.7152 41 1 2.0584 7.0711 -9.1272 42 1 3.5749 6.2930 -8.4232 43 1 1.0472 1.9337 -4.2412 44 1 2.1505 1.0819 -2.2183 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060556210.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:24 Heat of formation + Delta-G solvation = -8.883285 kcal Electronic energy + Delta-G solvation = -26144.218409 eV Core-core repulsion = 22448.799048 eV Total energy + Delta-G solvation = -3695.419361 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.80855 -40.84971 -39.13704 -37.11980 -36.99775 -35.88451 -34.78849 -33.15153 -32.03219 -31.04080 -27.65131 -26.86818 -25.67927 -23.95535 -23.49868 -23.26542 -22.19102 -21.44238 -21.12325 -19.18226 -18.69769 -18.48202 -17.75925 -16.97101 -16.47787 -16.33719 -16.18201 -15.91382 -15.79297 -15.49212 -15.07460 -14.84044 -14.74622 -14.32957 -14.07857 -13.96795 -13.76267 -13.62147 -13.48161 -13.06924 -12.85022 -12.80027 -12.43696 -12.33848 -12.19951 -12.12949 -11.86930 -11.56752 -11.52076 -11.44097 -11.31474 -10.96292 -10.60897 -10.10292 -9.90586 -9.73081 -9.14126 -8.63531 -5.72014 -0.10533 0.38094 1.30314 1.34580 1.45473 1.57758 1.92650 2.11528 2.22573 2.68533 2.88617 2.98697 3.13746 3.58227 3.83618 3.88146 3.95434 3.97943 4.03871 4.20488 4.21621 4.34171 4.34952 4.46358 4.52961 4.62651 4.76685 4.77828 4.87430 4.91363 5.01375 5.04600 5.11697 5.17257 5.20260 5.23897 5.30157 5.33327 5.38319 5.44896 5.50022 5.63198 5.94220 6.18634 6.39015 6.84553 7.09610 7.17294 7.57622 8.13231 8.23446 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.017453 B = 0.003369 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.883609 B = 8309.418696 C = 9474.614644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 C 0.086 3.914 4 N -0.432 5.432 5 C -0.487 4.487 6 H 0.091 0.909 7 C 0.151 3.849 8 N -0.771 5.771 9 Si 0.888 3.112 10 H -0.295 1.295 11 H -0.290 1.290 12 H -0.264 1.264 13 C 0.468 3.532 14 O -0.613 6.613 15 C -0.139 4.139 16 C -0.076 4.076 17 C -0.134 4.134 18 C 0.156 3.844 19 N -0.649 5.649 20 C 0.532 3.468 21 O -0.567 6.567 22 C -0.192 4.192 23 C -0.139 4.139 24 C -0.157 4.157 25 C -0.130 4.130 26 C -0.077 4.077 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.035 0.965 33 H 0.101 0.899 34 H 0.274 0.726 35 H 0.105 0.895 36 H 0.127 0.873 37 H 0.434 0.566 38 H 0.164 0.836 39 H 0.084 0.916 40 H 0.138 0.862 41 H 0.130 0.870 42 H 0.080 0.920 43 H 0.178 0.822 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.243 4.231 -20.762 27.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.162 4.162 3 C -0.035 4.035 4 N -0.150 5.150 5 C -0.605 4.605 6 H 0.108 0.892 7 C -0.074 4.074 8 N -0.397 5.397 9 Si 0.713 3.287 10 H -0.223 1.223 11 H -0.217 1.217 12 H -0.188 1.188 13 C 0.261 3.739 14 O -0.500 6.500 15 C -0.143 4.143 16 C -0.096 4.096 17 C -0.154 4.154 18 C 0.061 3.939 19 N -0.296 5.296 20 C 0.322 3.678 21 O -0.445 6.445 22 C -0.213 4.213 23 C -0.176 4.176 24 C -0.195 4.195 25 C -0.150 4.150 26 C -0.096 4.096 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.118 0.882 34 H 0.085 0.915 35 H 0.123 0.877 36 H 0.145 0.855 37 H 0.274 0.726 38 H 0.182 0.818 39 H 0.102 0.898 40 H 0.156 0.844 41 H 0.148 0.852 42 H 0.098 0.902 43 H 0.195 0.805 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -16.919 4.567 -20.330 26.841 hybrid contribution 1.413 0.071 0.668 1.564 sum -15.507 4.638 -19.662 25.467 Atomic orbital electron populations 1.21684 0.92958 1.02578 1.02491 1.21655 0.97167 0.95472 1.01868 1.22269 0.81085 0.98639 1.01534 1.43337 1.04957 1.37533 1.29154 1.18335 1.15154 0.95467 1.31562 0.89171 1.25538 1.02718 0.91583 0.87541 1.70815 1.33993 1.23510 1.11351 0.86829 0.83536 0.79358 0.79010 1.22284 1.21720 1.18780 1.18908 0.86291 0.84303 0.84412 1.90519 1.20789 1.61094 1.77632 1.20193 0.99232 0.97277 0.97603 1.20998 0.98345 0.94891 0.95336 1.20949 0.98472 1.00958 0.95015 1.17847 0.95050 0.93239 0.87810 1.43232 1.14138 1.54450 1.17743 1.20678 0.86551 0.76715 0.83831 1.90749 1.17186 1.58932 1.77647 1.22262 1.02839 1.08022 0.88191 1.23069 1.03910 0.96442 0.94184 1.23042 0.99499 0.96924 0.99991 1.21126 1.03321 0.93917 0.96594 1.21510 0.92983 0.99982 0.95101 0.90784 0.91367 0.93044 0.91851 0.93344 0.94662 0.88175 0.91496 0.87724 0.85512 0.72564 0.81804 0.89760 0.84361 0.85160 0.90170 0.80462 0.83196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.91 71.98 0.71 -2.44 16 2 C -0.12 -4.02 5.24 30.59 0.16 -3.86 16 3 C 0.09 3.39 4.93 86.38 0.43 3.82 16 4 N -0.43 -22.22 2.84 -639.18 -1.81 -24.04 16 5 C -0.49 -27.82 8.53 84.09 0.72 -27.10 16 6 H 0.09 5.07 6.75 -2.91 -0.02 5.05 16 7 C 0.15 8.94 3.81 84.95 0.32 9.26 16 8 N -0.77 -46.19 13.95 21.68 0.30 -45.89 16 9 Si 0.89 48.47 27.84 68.60 1.91 50.38 16 10 H -0.30 -17.83 6.84 99.48 0.68 -17.15 16 11 H -0.29 -14.89 7.11 99.48 0.71 -14.18 16 12 H -0.26 -13.77 7.11 99.48 0.71 -13.06 16 13 C 0.47 25.15 7.15 86.68 0.62 25.77 16 14 O -0.61 -38.46 13.15 -4.09 -0.05 -38.51 16 15 C -0.14 -5.89 5.38 -20.08 -0.11 -5.99 16 16 C -0.08 -3.10 9.58 22.51 0.22 -2.88 16 17 C -0.13 -4.52 8.63 22.35 0.19 -4.33 16 18 C 0.16 4.02 6.27 38.37 0.24 4.26 16 19 N -0.65 -11.25 5.32 -303.46 -1.61 -12.87 16 20 C 0.53 11.16 7.37 87.66 0.65 11.80 16 21 O -0.57 -18.04 13.89 -3.01 -0.04 -18.08 16 22 C -0.19 -2.19 6.19 -11.54 -0.07 -2.26 16 23 C -0.14 -1.31 10.23 30.58 0.31 -0.99 16 24 C -0.16 -1.92 10.04 30.58 0.31 -1.61 16 25 C -0.13 -3.00 9.94 22.35 0.22 -2.77 16 26 C -0.08 -2.42 7.41 22.51 0.17 -2.25 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.98 7.43 -2.39 -0.02 1.96 16 31 H 0.05 1.84 6.80 -2.38 -0.02 1.82 16 32 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.10 3.34 4.15 -2.39 -0.01 3.33 16 34 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 35 H 0.10 4.69 7.89 -2.91 -0.02 4.66 16 36 H 0.13 4.38 6.40 -2.91 -0.02 4.37 16 37 H 0.43 3.36 8.81 -92.71 -0.82 2.54 16 38 H 0.16 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 40 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.13 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.08 1.48 7.67 -2.39 -0.02 1.46 16 43 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 44 H 0.15 4.40 5.09 -2.91 -0.01 4.39 16 Total: -1.00 -84.17 361.17 3.96 -80.21 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.19 Total: 10.38 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 5.09 Total: -1.57 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -3.12 Total: -82.80 kcal Atomic # 8 Polarization: -56.50 SS G_CDS: -0.10 Total: -56.59 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 1.91 Total: 50.38 kcal Total: -84.17 3.96 -80.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060556210.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.322 kcal (2) G-P(sol) polarization free energy of solvation -84.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds