Wall clock time and date at job start Tue Mar 31 2020 11:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99872 * 2 1 4 4 N 1.46901 * 109.46921 * 124.99770 * 3 2 1 5 5 C 1.46848 * 111.00109 * 45.79068 * 4 3 2 6 6 C 1.53036 * 109.52325 * 185.83663 * 5 4 3 7 7 C 1.53123 * 109.27910 * 300.81822 * 6 5 4 8 8 N 1.46498 * 109.57384 * 177.59229 * 7 6 5 9 9 S 1.65596 * 120.00119 * 95.28733 * 8 7 6 10 10 O 1.42098 * 104.27898 * 181.06946 * 9 8 7 11 11 O 1.42094 * 104.27714 * 308.92712 * 9 8 7 12 12 C 1.81398 * 104.44942 * 65.00098 * 9 8 7 13 13 C 1.53007 * 109.47221 * 180.02562 * 12 9 8 14 14 C 1.52998 * 109.47089 * 179.97438 * 13 12 9 15 15 C 1.50699 * 109.46916 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00288 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99743 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00087 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99753 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.46930 * 89.99682 * 19 17 15 21 21 H 1.48494 * 109.46622 * 209.99644 * 19 17 15 22 22 H 1.48498 * 109.47114 * 329.99654 * 19 17 15 23 23 C 1.53121 * 109.15709 * 57.65405 * 7 6 5 24 24 C 1.46849 * 110.99649 * 169.99608 * 4 3 2 25 25 H 1.08005 * 120.00182 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 27 27 H 1.07995 * 120.00180 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47060 * 244.99951 * 3 2 1 29 29 H 1.09001 * 109.47380 * 5.00038 * 3 2 1 30 30 H 1.08997 * 109.46035 * 305.85174 * 5 4 3 31 31 H 1.09006 * 109.46342 * 65.82071 * 5 4 3 32 32 H 1.09005 * 109.50033 * 180.87700 * 6 5 4 33 33 H 1.09001 * 109.50223 * 60.76533 * 6 5 4 34 34 H 1.09001 * 109.52263 * 297.75434 * 7 6 5 35 35 H 0.97006 * 119.99590 * 275.28676 * 8 7 6 36 36 H 1.09009 * 109.47076 * 299.99855 * 12 9 8 37 37 H 1.08996 * 109.47349 * 59.99997 * 12 9 8 38 38 H 1.08998 * 109.46181 * 299.99711 * 13 12 9 39 39 H 1.08996 * 109.47290 * 59.99558 * 13 12 9 40 40 H 1.09003 * 109.46774 * 299.99635 * 14 13 12 41 41 H 1.08996 * 109.47400 * 59.99645 * 14 13 12 42 42 H 0.97003 * 119.99799 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.50276 * 182.40062 * 23 7 6 44 44 H 1.09006 * 109.50060 * 62.28789 * 23 7 6 45 45 H 1.09001 * 109.46678 * 294.17655 * 24 4 3 46 46 H 1.09006 * 109.46228 * 54.16086 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3320 1.1346 5 6 3.7352 0.0672 1.2384 6 6 4.5865 0.0753 2.5101 7 6 5.5615 1.2548 2.4583 8 7 6.3403 1.3027 3.6982 9 16 7.8347 0.5922 3.7653 10 8 8.2680 0.8128 5.1005 11 8 7.6197 -0.7232 3.2727 12 6 8.8441 1.5505 2.6020 13 6 10.2652 0.9841 2.5732 14 6 11.1164 1.7920 1.5916 15 6 12.5159 1.2337 1.5628 16 1 12.7726 0.3876 2.1828 17 6 13.4688 1.8038 0.7455 18 7 13.1563 2.8345 -0.0092 19 14 15.2038 1.1122 0.7102 20 1 15.2960 0.0600 -0.3335 21 1 16.1646 2.2015 0.4014 22 1 15.5297 0.5254 2.0349 23 6 4.7688 2.5555 2.3013 24 6 3.9122 2.4755 1.0357 25 1 -0.5401 0.9353 -0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 2.6213 1.4026 -0.9314 29 1 1.3585 2.1317 0.0896 30 1 3.0301 -0.7630 1.2786 31 1 4.3823 -0.0478 0.3688 32 1 5.1468 -0.8572 2.5788 33 1 3.9389 0.1763 3.3810 34 1 6.2348 1.1340 1.6096 35 1 5.9806 1.7505 4.4799 36 1 8.4080 1.4875 1.6050 37 1 8.8744 2.5926 2.9202 38 1 10.7014 1.0468 3.5701 39 1 10.2346 -0.0579 2.2548 40 1 10.6798 1.7289 0.5948 41 1 11.1470 2.8341 1.9095 42 1 13.8267 3.2353 -0.5845 43 1 5.4593 3.3950 2.2210 44 1 4.1241 2.6956 3.1690 45 1 4.5585 2.3492 0.1671 46 1 3.3357 3.3945 0.9290 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068916487.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:56 Heat of formation + Delta-G solvation = -66.226843 kcal Electronic energy + Delta-G solvation = -24615.303413 eV Core-core repulsion = 21052.841400 eV Total energy + Delta-G solvation = -3562.462013 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.64385 -36.92542 -36.32191 -35.72274 -34.68712 -33.78461 -32.20339 -31.15208 -30.60537 -27.82966 -26.02493 -23.75665 -23.66686 -22.92704 -20.80393 -20.40782 -19.65275 -19.12523 -17.44449 -17.03733 -16.57052 -16.12000 -15.72984 -15.48630 -15.29148 -15.08095 -14.50650 -14.33494 -14.16669 -14.12872 -13.60526 -13.32132 -12.71729 -12.58106 -12.30943 -12.20546 -12.06856 -11.94628 -11.82245 -11.77958 -11.73320 -11.45909 -11.37482 -11.21959 -10.94157 -10.91375 -10.84668 -10.67169 -10.40629 -9.96725 -9.90780 -9.65214 -9.32674 -9.09012 -8.58002 -8.42310 -6.07283 -4.10281 0.47023 1.88119 2.83687 3.29415 3.35541 3.39738 3.66952 3.94097 4.36413 4.38027 4.41362 4.46040 4.64817 4.69561 4.76371 4.92757 4.97093 5.06831 5.11342 5.14600 5.24776 5.26658 5.29608 5.33499 5.37896 5.49539 5.56835 5.63438 5.70668 5.83480 5.86887 6.03055 6.16967 6.23025 6.25241 6.37338 6.43298 6.72221 6.77948 6.85281 6.93430 7.55074 7.64946 7.90747 8.31279 8.95967 9.54487 11.03934 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.017901 B = 0.002654 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.774862 B =10548.497251 C =11359.584441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.157 4.157 3 C 0.080 3.920 4 N -0.535 5.535 5 C 0.050 3.950 6 C -0.135 4.135 7 C 0.152 3.848 8 N -1.119 6.119 9 S 2.599 3.401 10 O -0.964 6.964 11 O -0.961 6.961 12 C -0.610 4.610 13 C -0.106 4.106 14 C 0.031 3.969 15 C -0.526 4.526 16 H 0.058 0.942 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.122 4.122 24 C 0.055 3.945 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.112 0.888 28 H 0.044 0.956 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.038 0.962 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.415 0.585 36 H 0.124 0.876 37 H 0.129 0.871 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.261 0.739 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.039 0.961 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.990 -0.956 1.323 25.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.175 4.175 3 C -0.047 4.047 4 N -0.260 5.260 5 C -0.079 4.079 6 C -0.174 4.174 7 C 0.045 3.955 8 N -0.876 5.876 9 S 2.695 3.305 10 O -0.955 6.955 11 O -0.950 6.950 12 C -0.742 4.742 13 C -0.145 4.145 14 C -0.008 4.008 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.722 3.278 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.162 4.162 24 C -0.074 4.074 25 H 0.115 0.885 26 H 0.116 0.884 27 H 0.130 0.870 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.248 0.752 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.038 0.962 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.058 0.942 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -24.886 -1.613 2.032 25.021 hybrid contribution 1.303 0.398 -1.048 1.719 sum -23.583 -1.215 0.984 23.635 Atomic orbital electron populations 1.23833 0.95799 1.01931 1.00362 1.22963 0.96134 0.98186 1.00209 1.21258 0.95141 0.96222 0.92067 1.62125 1.18896 1.03155 1.41842 1.22219 0.96141 0.92197 0.97292 1.22152 0.97653 0.99264 0.98330 1.20804 0.93309 0.95815 0.85617 1.55799 1.35612 1.75764 1.20377 1.05333 0.73744 0.75583 0.75804 1.93577 1.81159 1.86484 1.34244 1.93566 1.83916 1.35166 1.82396 1.30563 1.12310 1.14835 1.16461 1.21496 0.89315 1.00658 1.03033 1.19060 0.93511 0.94952 0.93238 1.21256 0.95224 1.15500 1.24460 0.92356 1.25025 0.99065 0.94934 0.95385 1.69956 1.34466 1.22603 1.26428 0.86548 0.84063 0.78644 0.78521 1.20565 1.21168 1.19730 1.21914 0.98388 0.97016 0.98848 1.22099 0.94175 0.94141 0.96977 0.88508 0.88380 0.87000 0.93775 0.90202 0.89754 0.94389 0.89594 0.90512 0.90048 0.75153 0.85735 0.85277 0.91560 0.91577 0.96187 0.96121 0.92899 0.90356 0.90206 0.94245 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.13 14.32 29.02 0.42 -0.72 16 2 C -0.16 -1.10 8.56 -36.02 -0.31 -1.41 16 3 C 0.08 0.58 5.72 -4.97 -0.03 0.56 16 4 N -0.54 -4.46 4.80 -236.11 -1.13 -5.59 16 5 C 0.05 0.44 5.00 -3.83 -0.02 0.42 16 6 C -0.13 -1.33 5.70 -26.65 -0.15 -1.48 16 7 C 0.15 1.47 2.62 -67.81 -0.18 1.29 16 8 N -1.12 -11.70 5.37 -4.78 -0.03 -11.72 16 9 S 2.60 37.46 5.38 -107.50 -0.58 36.89 16 10 O -0.96 -16.87 18.08 -57.54 -1.04 -17.91 16 11 O -0.96 -16.40 17.20 -57.54 -0.99 -17.39 16 12 C -0.61 -9.23 5.96 37.16 0.22 -9.01 16 13 C -0.11 -2.13 5.16 -26.73 -0.14 -2.27 16 14 C 0.03 0.77 4.97 -27.88 -0.14 0.64 16 15 C -0.53 -14.81 9.11 -34.44 -0.31 -15.12 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 19 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.12 -0.96 5.63 -26.65 -0.15 -1.11 16 24 C 0.05 0.42 5.42 -3.83 -0.02 0.40 16 25 H 0.10 0.54 7.84 -52.48 -0.41 0.13 16 26 H 0.10 0.52 8.06 -52.49 -0.42 0.10 16 27 H 0.11 0.76 6.47 -52.49 -0.34 0.42 16 28 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 29 H 0.08 0.53 7.79 -51.93 -0.40 0.13 16 30 H 0.08 0.68 5.79 -51.93 -0.30 0.38 16 31 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.98 7.51 -51.93 -0.39 0.59 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.79 7.16 -51.93 -0.37 0.42 16 35 H 0.41 3.57 8.80 -34.47 -0.30 3.27 16 36 H 0.12 1.67 7.45 -51.92 -0.39 1.28 16 37 H 0.13 1.75 8.14 -51.93 -0.42 1.33 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -34.42 379.16 -11.19 -45.60 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -7.94 Total: -0.07 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: -0.91 Total: -26.28 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: -0.42 Total: -43.10 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -2.03 Total: -35.30 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 37.46 SS G_CDS: -0.58 Total: 36.89 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.42 -11.19 -45.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068916487.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.622 kcal (2) G-P(sol) polarization free energy of solvation -34.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds