Wall clock time and date at job start Tue Mar 31 2020 11:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99872 * 2 1 4 4 N 1.46901 * 109.46921 * 124.99770 * 3 2 1 5 5 C 1.46848 * 111.00109 * 45.79068 * 4 3 2 6 6 C 1.53036 * 109.52325 * 185.83663 * 5 4 3 7 7 C 1.53123 * 109.27910 * 300.81822 * 6 5 4 8 8 N 1.46498 * 109.57384 * 177.59229 * 7 6 5 9 9 S 1.65596 * 120.00119 * 95.28733 * 8 7 6 10 10 O 1.42098 * 104.27898 * 181.06946 * 9 8 7 11 11 O 1.42094 * 104.27714 * 308.92712 * 9 8 7 12 12 C 1.81398 * 104.44942 * 65.00098 * 9 8 7 13 13 C 1.53007 * 109.47221 * 180.02562 * 12 9 8 14 14 C 1.52998 * 109.47089 * 179.97438 * 13 12 9 15 15 C 1.50699 * 109.46916 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00288 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99743 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00087 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99753 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.46930 * 89.99682 * 19 17 15 21 21 H 1.48494 * 109.46622 * 209.99644 * 19 17 15 22 22 H 1.48498 * 109.47114 * 329.99654 * 19 17 15 23 23 C 1.53121 * 109.15709 * 57.65405 * 7 6 5 24 24 C 1.46849 * 110.99649 * 169.99608 * 4 3 2 25 25 H 1.08005 * 120.00182 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 27 27 H 1.07995 * 120.00180 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47060 * 244.99951 * 3 2 1 29 29 H 1.09001 * 109.47380 * 5.00038 * 3 2 1 30 30 H 1.08997 * 109.46035 * 305.85174 * 5 4 3 31 31 H 1.09006 * 109.46342 * 65.82071 * 5 4 3 32 32 H 1.09005 * 109.50033 * 180.87700 * 6 5 4 33 33 H 1.09001 * 109.50223 * 60.76533 * 6 5 4 34 34 H 1.09001 * 109.52263 * 297.75434 * 7 6 5 35 35 H 0.97006 * 119.99590 * 275.28676 * 8 7 6 36 36 H 1.09009 * 109.47076 * 299.99855 * 12 9 8 37 37 H 1.08996 * 109.47349 * 59.99997 * 12 9 8 38 38 H 1.08998 * 109.46181 * 299.99711 * 13 12 9 39 39 H 1.08996 * 109.47290 * 59.99558 * 13 12 9 40 40 H 1.09003 * 109.46774 * 299.99635 * 14 13 12 41 41 H 1.08996 * 109.47400 * 59.99645 * 14 13 12 42 42 H 0.97003 * 119.99799 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.50276 * 182.40062 * 23 7 6 44 44 H 1.09006 * 109.50060 * 62.28789 * 23 7 6 45 45 H 1.09001 * 109.46678 * 294.17655 * 24 4 3 46 46 H 1.09006 * 109.46228 * 54.16086 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3320 1.1346 5 6 3.7352 0.0672 1.2384 6 6 4.5865 0.0753 2.5101 7 6 5.5615 1.2548 2.4583 8 7 6.3403 1.3027 3.6982 9 16 7.8347 0.5922 3.7653 10 8 8.2680 0.8128 5.1005 11 8 7.6197 -0.7232 3.2727 12 6 8.8441 1.5505 2.6020 13 6 10.2652 0.9841 2.5732 14 6 11.1164 1.7920 1.5916 15 6 12.5159 1.2337 1.5628 16 1 12.7726 0.3876 2.1828 17 6 13.4688 1.8038 0.7455 18 7 13.1563 2.8345 -0.0092 19 14 15.2038 1.1122 0.7102 20 1 15.2960 0.0600 -0.3335 21 1 16.1646 2.2015 0.4014 22 1 15.5297 0.5254 2.0349 23 6 4.7688 2.5555 2.3013 24 6 3.9122 2.4755 1.0357 25 1 -0.5401 0.9353 -0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 2.6213 1.4026 -0.9314 29 1 1.3585 2.1317 0.0896 30 1 3.0301 -0.7630 1.2786 31 1 4.3823 -0.0478 0.3688 32 1 5.1468 -0.8572 2.5788 33 1 3.9389 0.1763 3.3810 34 1 6.2348 1.1340 1.6096 35 1 5.9806 1.7505 4.4799 36 1 8.4080 1.4875 1.6050 37 1 8.8744 2.5926 2.9202 38 1 10.7014 1.0468 3.5701 39 1 10.2346 -0.0579 2.2548 40 1 10.6798 1.7289 0.5948 41 1 11.1470 2.8341 1.9095 42 1 13.8267 3.2353 -0.5845 43 1 5.4593 3.3950 2.2210 44 1 4.1241 2.6956 3.1690 45 1 4.5585 2.3492 0.1671 46 1 3.3357 3.3945 0.9290 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068916487.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:55 Heat of formation + Delta-G solvation = -91.382013 kcal Electronic energy + Delta-G solvation = -24616.394223 eV Core-core repulsion = 21052.841400 eV Total energy + Delta-G solvation = -3563.552823 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.31741 -38.18314 -37.13670 -36.95783 -36.47810 -34.42298 -34.17538 -31.84232 -31.31364 -29.66918 -26.65184 -25.64117 -24.33240 -23.61596 -22.46841 -21.18942 -20.33436 -20.15905 -18.68415 -18.47973 -17.82723 -17.13571 -16.97667 -16.49929 -16.32893 -16.03223 -15.91765 -15.51054 -14.97648 -14.87033 -14.51416 -14.38201 -14.09897 -13.89656 -13.55729 -13.33570 -13.21991 -13.13422 -13.04758 -12.96492 -12.78499 -12.73998 -12.63208 -12.37238 -12.16167 -12.12731 -12.04015 -11.76442 -11.55276 -11.43654 -11.36117 -11.05249 -10.58515 -10.42657 -10.29891 -9.19747 -8.23811 -6.34677 -0.73444 1.37993 1.39549 1.40182 1.51633 1.77471 2.38928 2.75369 3.06418 3.09739 3.23530 3.64846 3.75812 3.81651 3.90508 4.00075 4.01692 4.19895 4.29150 4.32024 4.38210 4.45964 4.50677 4.58986 4.65026 4.73497 4.81057 4.88078 4.94953 4.95546 4.98508 5.05262 5.08987 5.18893 5.26971 5.42499 5.44474 5.61765 5.74048 5.78341 5.86794 6.08900 6.15563 6.17053 6.18774 6.80879 7.34619 8.87627 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.017901 B = 0.002654 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.774862 B =10548.497251 C =11359.584441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.172 4.172 3 C 0.081 3.919 4 N -0.540 5.540 5 C 0.052 3.948 6 C -0.133 4.133 7 C 0.144 3.856 8 N -1.102 6.102 9 S 2.629 3.371 10 O -0.993 6.993 11 O -0.987 6.987 12 C -0.610 4.610 13 C -0.106 4.106 14 C 0.031 3.969 15 C -0.553 4.553 16 H 0.060 0.940 17 C 0.002 3.998 18 N -0.929 5.929 19 Si 0.963 3.037 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.265 1.265 23 C -0.117 4.117 24 C 0.052 3.948 25 H 0.104 0.896 26 H 0.106 0.894 27 H 0.110 0.890 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.033 0.967 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.427 0.573 36 H 0.142 0.858 37 H 0.147 0.853 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.003 0.997 41 H 0.003 0.997 42 H 0.265 0.735 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.036 0.964 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.938 -0.738 1.444 25.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.190 4.190 3 C -0.046 4.046 4 N -0.265 5.265 5 C -0.076 4.076 6 C -0.173 4.173 7 C 0.036 3.964 8 N -0.862 5.862 9 S 2.724 3.276 10 O -0.984 6.984 11 O -0.976 6.976 12 C -0.741 4.741 13 C -0.146 4.146 14 C -0.007 4.007 15 C -0.591 4.591 16 H 0.078 0.922 17 C -0.196 4.196 18 N -0.569 5.569 19 Si 0.787 3.213 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.189 1.189 23 C -0.156 4.156 24 C -0.076 4.076 25 H 0.122 0.878 26 H 0.124 0.876 27 H 0.128 0.872 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.263 0.737 36 H 0.161 0.839 37 H 0.165 0.835 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.021 0.979 41 H 0.021 0.979 42 H 0.074 0.926 43 H 0.107 0.893 44 H 0.104 0.896 45 H 0.055 0.945 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -25.837 -1.395 2.163 25.965 hybrid contribution 1.492 0.347 -1.109 1.891 sum -24.344 -1.048 1.055 24.390 Atomic orbital electron populations 1.24000 0.95624 1.02723 0.99073 1.23003 0.96525 0.98094 1.01405 1.21286 0.95045 0.96663 0.91627 1.62143 1.18984 1.02947 1.42451 1.22171 0.96090 0.92923 0.96455 1.22110 0.97676 0.98455 0.99061 1.21027 0.93394 0.97001 0.84934 1.55382 1.33903 1.75467 1.21435 1.04256 0.74048 0.74837 0.74477 1.93534 1.82214 1.86791 1.35837 1.93535 1.84504 1.36969 1.82624 1.30519 1.09499 1.15825 1.18257 1.21308 0.91646 1.00147 1.01457 1.18957 0.93455 0.94639 0.93636 1.21742 0.96937 1.15773 1.24607 0.92206 1.25937 1.03489 0.95225 0.94940 1.70066 1.35975 1.23781 1.27101 0.85478 0.78763 0.78134 0.78898 1.19696 1.20518 1.18947 1.21896 0.98429 0.96044 0.99236 1.22167 0.94254 0.94511 0.96696 0.87763 0.87593 0.87199 0.93914 0.89411 0.89288 0.94870 0.91401 0.90276 0.90002 0.73672 0.83939 0.83481 0.91629 0.91557 0.97862 0.97857 0.92622 0.89251 0.89592 0.94533 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 14.32 67.78 0.97 -0.96 16 2 C -0.17 -2.22 8.56 25.65 0.22 -2.00 16 3 C 0.08 1.06 5.72 85.56 0.49 1.55 16 4 N -0.54 -8.15 4.80 -900.90 -4.32 -12.48 16 5 C 0.05 0.87 5.00 86.33 0.43 1.30 16 6 C -0.13 -2.51 5.70 30.65 0.17 -2.33 16 7 C 0.14 2.55 2.62 45.07 0.12 2.67 16 8 N -1.10 -21.25 5.37 -169.05 -0.91 -22.16 16 9 S 2.63 73.38 5.38 -56.49 -0.30 73.07 16 10 O -0.99 -33.94 18.08 -127.65 -2.31 -36.25 16 11 O -0.99 -33.23 17.20 -127.65 -2.20 -35.42 16 12 C -0.61 -17.91 5.96 71.98 0.43 -17.48 16 13 C -0.11 -4.30 5.16 30.60 0.16 -4.14 16 14 C 0.03 1.61 4.97 29.85 0.15 1.76 16 15 C -0.55 -31.43 9.11 25.60 0.23 -31.19 16 16 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 17 C 0.00 0.13 5.46 84.66 0.46 0.60 16 18 N -0.93 -55.55 13.29 21.45 0.28 -55.27 16 19 Si 0.96 44.16 29.54 68.60 2.03 46.18 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 C -0.12 -1.57 5.63 30.65 0.17 -1.40 16 24 C 0.05 0.70 5.42 86.33 0.47 1.17 16 25 H 0.10 0.97 7.84 -2.91 -0.02 0.94 16 26 H 0.11 0.97 8.06 -2.91 -0.02 0.94 16 27 H 0.11 1.42 6.47 -2.91 -0.02 1.40 16 28 H 0.04 0.57 8.08 -2.39 -0.02 0.55 16 29 H 0.09 1.00 7.79 -2.39 -0.02 0.98 16 30 H 0.09 1.38 5.79 -2.39 -0.01 1.37 16 31 H 0.03 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.07 1.53 7.51 -2.38 -0.02 1.51 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.47 7.16 -2.39 -0.02 1.45 16 35 H 0.43 6.48 8.80 -96.74 -0.85 5.63 16 36 H 0.14 3.64 7.45 -2.39 -0.02 3.63 16 37 H 0.15 3.77 8.14 -2.39 -0.02 3.75 16 38 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 42 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 43 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 45 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.09 1.02 8.12 -2.38 -0.02 1.00 16 Total: -1.00 -73.22 379.16 -3.16 -76.38 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.09 Total: 16.40 kcal Atomic # 6 Polarization: -54.94 SS G_CDS: 4.48 Total: -50.47 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -4.95 Total: -89.90 kcal Atomic # 8 Polarization: -67.17 SS G_CDS: -4.50 Total: -71.67 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: 73.38 SS G_CDS: -0.30 Total: 73.07 kcal Total: -73.22 -3.16 -76.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068916487.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.001 kcal (2) G-P(sol) polarization free energy of solvation -73.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds