Wall clock time and date at job start Tue Mar 31 2020 11:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50692 * 120.00251 * 2 1 4 4 N 1.46496 * 109.47218 * 124.99715 * 3 2 1 5 5 C 1.34777 * 120.00018 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00275 * 0.02562 * 5 4 3 7 7 C 1.50707 * 120.00134 * 179.97438 * 5 4 3 8 8 C 1.52994 * 109.47078 * 180.02562 * 7 5 4 9 9 C 1.50707 * 109.46774 * 180.02562 * 8 7 5 10 10 O 1.21283 * 120.00097 * 354.45796 * 9 8 7 11 11 N 1.34775 * 119.99667 * 174.45902 * 9 8 7 12 12 C 1.46506 * 120.00030 * 184.45100 * 11 9 8 13 13 C 1.50707 * 109.47103 * 270.00389 * 12 11 9 14 14 H 1.07998 * 119.99957 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99566 * 179.97438 * 13 12 11 16 16 N 1.31505 * 120.00165 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99610 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47205 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47454 * 119.99768 * 17 15 13 20 20 H 1.48499 * 109.46992 * 240.00274 * 17 15 13 21 21 C 1.39923 * 120.00153 * 4.45919 * 11 9 8 22 22 C 1.38872 * 120.07336 * 66.79372 * 21 11 9 23 23 C 1.38113 * 119.92646 * 179.97438 * 22 21 11 24 24 C 1.38284 * 120.07236 * 359.97313 * 23 22 21 25 25 C 1.38277 * 120.14310 * 0.04475 * 24 23 22 26 26 C 1.38117 * 120.06854 * 359.96101 * 25 24 23 27 27 H 1.08002 * 120.00193 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.00170 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.99562 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47044 * 4.99883 * 3 2 1 31 31 H 1.09005 * 109.47374 * 245.00181 * 3 2 1 32 32 H 0.97003 * 120.00423 * 0.02562 * 4 3 2 33 33 H 1.09004 * 109.46647 * 60.00234 * 7 5 4 34 34 H 1.09001 * 109.46925 * 300.01087 * 7 5 4 35 35 H 1.08998 * 109.47255 * 60.00377 * 8 7 5 36 36 H 1.08998 * 109.47196 * 299.99859 * 8 7 5 37 37 H 1.09001 * 109.46670 * 30.00181 * 12 11 9 38 38 H 1.08996 * 109.47328 * 150.00546 * 12 11 9 39 39 H 0.97008 * 120.00038 * 179.97438 * 16 15 13 40 40 H 1.07996 * 120.03472 * 359.70196 * 22 21 11 41 41 H 1.07998 * 119.96255 * 179.97438 * 23 22 21 42 42 H 1.08010 * 119.92736 * 180.02562 * 24 23 22 43 43 H 1.07999 * 119.96673 * 179.97438 * 25 24 23 44 44 H 1.07999 * 120.03237 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3318 1.1314 5 6 3.7790 2.4085 1.3329 6 8 3.7152 3.3554 0.5777 7 6 4.7355 2.4363 2.4971 8 6 5.5006 3.7612 2.4970 9 6 6.4575 3.7887 3.6609 10 8 6.4508 2.8879 4.4730 11 7 7.3208 4.8144 3.7994 12 6 8.3163 4.7940 4.8741 13 6 7.7394 5.4432 6.1057 14 1 6.7318 5.8317 6.0897 15 6 8.4975 5.5402 7.2532 16 7 9.7239 5.0658 7.2731 17 14 7.7822 6.3442 8.7800 18 1 6.3943 6.7921 8.4996 19 1 7.7707 5.3648 9.8961 20 1 8.6129 7.5157 9.1579 21 6 7.2661 5.8989 2.9169 22 6 6.1642 6.7441 2.9205 23 6 6.1137 7.8140 2.0485 24 6 7.1589 8.0443 1.1729 25 6 8.2573 7.2043 1.1666 26 6 8.3140 6.1326 2.0361 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8499 -0.9354 -0.0004 30 1 1.3586 2.1315 0.0895 31 1 2.6213 1.4025 -0.9314 32 1 3.0450 0.5743 1.7352 33 1 5.4401 1.6094 2.4082 34 1 4.1773 2.3394 3.4283 35 1 4.7957 4.5878 2.5861 36 1 6.0587 3.8584 1.5658 37 1 8.5862 3.7624 5.0997 38 1 9.2043 5.3410 4.5572 39 1 10.2574 5.1343 8.0804 40 1 5.3458 6.5625 3.6013 41 1 5.2568 8.4714 2.0505 42 1 7.1171 8.8819 0.4923 43 1 9.0719 7.3866 0.4813 44 1 9.1719 5.4767 2.0304 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076691247.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:16 Heat of formation + Delta-G solvation = -28.512589 kcal Electronic energy + Delta-G solvation = -25654.539905 eV Core-core repulsion = 21958.269354 eV Total energy + Delta-G solvation = -3696.270551 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.12444 -39.53037 -38.05055 -36.06366 -34.86782 -33.14170 -32.81657 -32.27747 -30.60800 -29.32952 -27.80717 -26.65289 -24.61292 -22.74866 -22.29295 -21.86954 -20.84122 -19.96179 -18.90337 -17.53802 -16.74373 -16.49664 -16.25034 -16.01495 -15.81851 -15.34888 -15.19034 -14.76727 -14.27242 -14.23150 -13.99048 -13.65389 -13.41289 -13.10324 -12.99872 -12.68008 -12.51135 -12.23211 -12.10021 -11.83806 -11.53522 -11.43657 -11.17497 -11.09463 -10.85676 -10.78733 -10.64372 -10.26616 -10.16764 -9.75034 -9.70661 -9.28897 -9.22196 -8.61010 -8.53147 -8.43884 -7.63229 -6.05806 -4.09769 1.64311 1.68217 1.72816 2.60571 3.15370 3.28917 3.30058 3.37288 3.42273 3.84926 4.11736 4.39612 4.44575 4.66763 4.70842 5.06894 5.16649 5.21244 5.23307 5.24830 5.29269 5.30288 5.41046 5.43082 5.50535 5.73281 5.77222 5.89035 6.00592 6.07206 6.10988 6.13351 6.16625 6.32952 6.33914 6.67333 6.80457 6.85823 7.00752 7.24590 7.33607 7.35802 7.49969 7.89910 8.13159 8.19068 8.35300 8.84567 8.99174 9.54623 11.02636 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011948 B = 0.003362 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.907311 B = 8326.256641 C = 9847.626750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.176 4.176 3 C 0.145 3.855 4 N -0.733 5.733 5 C 0.515 3.485 6 O -0.539 6.539 7 C -0.124 4.124 8 C -0.124 4.124 9 C 0.513 3.487 10 O -0.531 6.531 11 N -0.561 5.561 12 C 0.247 3.753 13 C -0.522 4.522 14 H 0.058 0.942 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.899 3.101 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.164 3.836 22 C -0.122 4.122 23 C -0.108 4.108 24 C -0.134 4.134 25 C -0.110 4.110 26 C -0.125 4.125 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.403 0.597 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.035 0.965 39 H 0.263 0.737 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.548 -4.654 -15.941 20.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.194 4.194 3 C 0.022 3.978 4 N -0.386 5.386 5 C 0.302 3.698 6 O -0.416 6.416 7 C -0.164 4.164 8 C -0.165 4.165 9 C 0.301 3.699 10 O -0.407 6.407 11 N -0.289 5.289 12 C 0.130 3.870 13 C -0.561 4.561 14 H 0.077 0.923 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.726 3.274 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.209 1.209 21 C 0.072 3.928 22 C -0.141 4.141 23 C -0.127 4.127 24 C -0.153 4.153 25 C -0.128 4.128 26 C -0.145 4.145 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.134 0.866 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.238 0.762 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.410 -4.500 -15.893 20.660 hybrid contribution -0.252 0.124 1.243 1.274 sum -12.662 -4.376 -14.650 19.852 Atomic orbital electron populations 1.23981 0.95799 1.02415 0.98327 1.23030 0.96263 0.98199 1.01918 1.20386 0.91897 0.95431 0.90056 1.46024 1.41254 1.20420 1.30899 1.20896 0.80659 0.81822 0.86426 1.90706 1.68215 1.35236 1.47448 1.21389 0.98012 0.99918 0.97096 1.21426 0.98466 0.98167 0.98402 1.20393 0.81093 0.82070 0.86385 1.90675 1.68957 1.37106 1.44004 1.45961 1.35601 1.16968 1.30328 1.19434 0.85585 0.99014 0.82983 1.21399 1.00301 1.38204 0.96194 0.92343 1.24912 0.94835 0.95577 0.98740 1.69935 1.08722 1.46072 1.28697 0.86429 0.79184 0.78967 0.82789 1.19762 1.20858 1.20946 1.17708 0.94680 0.89685 0.90709 1.21329 0.98978 0.94594 0.99237 1.20956 0.98651 0.97257 0.95827 1.21045 0.94434 0.99890 0.99894 1.20948 0.98115 0.94911 0.98877 1.21282 0.99066 0.98854 0.95322 0.88162 0.87896 0.86639 0.91138 0.90712 0.76249 0.88143 0.87845 0.88481 0.88842 0.93532 0.94687 0.92747 0.86039 0.86185 0.86442 0.86159 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 14.32 29.02 0.42 -0.54 16 2 C -0.18 -1.13 9.63 -36.03 -0.35 -1.47 16 3 C 0.15 1.26 6.11 -5.20 -0.03 1.23 16 4 N -0.73 -6.99 5.55 -61.48 -0.34 -7.33 16 5 C 0.51 6.63 7.83 -10.98 -0.09 6.54 16 6 O -0.54 -8.78 15.98 5.56 0.09 -8.69 16 7 C -0.12 -1.65 5.01 -27.88 -0.14 -1.79 16 8 C -0.12 -1.99 3.65 -27.88 -0.10 -2.09 16 9 C 0.51 10.59 7.53 -10.98 -0.08 10.51 16 10 O -0.53 -12.68 15.61 5.55 0.09 -12.59 16 11 N -0.56 -12.24 2.51 -114.73 -0.29 -12.53 16 12 C 0.25 6.51 5.07 -5.19 -0.03 6.49 16 13 C -0.52 -14.93 9.39 -34.44 -0.32 -15.25 16 14 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.90 -26.63 13.28 55.43 0.74 -25.89 16 17 Si 0.90 22.08 29.54 -169.99 -5.02 17.05 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 21 C 0.16 3.10 4.42 -83.69 -0.37 2.73 16 22 C -0.12 -2.08 8.46 -39.39 -0.33 -2.41 16 23 C -0.11 -1.56 10.04 -39.61 -0.40 -1.95 16 24 C -0.13 -1.79 10.04 -39.55 -0.40 -2.19 16 25 C -0.11 -1.54 10.04 -39.61 -0.40 -1.94 16 26 C -0.13 -2.10 9.64 -39.39 -0.38 -2.48 16 27 H 0.10 0.56 7.84 -52.49 -0.41 0.15 16 28 H 0.10 0.45 8.06 -52.49 -0.42 0.03 16 29 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 30 H 0.07 0.66 7.79 -51.93 -0.40 0.26 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.40 2.88 8.46 -40.82 -0.35 2.53 16 33 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.10 1.34 8.04 -51.93 -0.42 0.93 16 35 H 0.10 1.54 6.95 -51.93 -0.36 1.18 16 36 H 0.09 1.47 7.97 -51.93 -0.41 1.05 16 37 H 0.05 1.35 7.49 -51.93 -0.39 0.96 16 38 H 0.04 0.94 7.83 -51.93 -0.41 0.54 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.12 2.07 7.90 -52.49 -0.41 1.66 16 41 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 42 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 43 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 44 H 0.12 2.01 8.06 -52.49 -0.42 1.58 16 LS Contribution 381.47 15.07 5.75 5.75 Total: -1.00 -34.56 381.47 -8.58 -43.14 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.49 Total: 4.06 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -3.10 Total: -2.97 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.11 Total: -45.75 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: 0.18 Total: -21.28 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.56 -8.58 -43.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076691247.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.629 kcal (2) G-P(sol) polarization free energy of solvation -34.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds