Wall clock time and date at job start Tue Mar 31 2020 11:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50692 * 120.00251 * 2 1 4 4 N 1.46496 * 109.47218 * 124.99715 * 3 2 1 5 5 C 1.34777 * 120.00018 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00275 * 0.02562 * 5 4 3 7 7 C 1.50707 * 120.00134 * 179.97438 * 5 4 3 8 8 C 1.52994 * 109.47078 * 180.02562 * 7 5 4 9 9 C 1.50707 * 109.46774 * 180.02562 * 8 7 5 10 10 O 1.21283 * 120.00097 * 354.45796 * 9 8 7 11 11 N 1.34775 * 119.99667 * 174.45902 * 9 8 7 12 12 C 1.46506 * 120.00030 * 184.45100 * 11 9 8 13 13 C 1.50707 * 109.47103 * 270.00389 * 12 11 9 14 14 H 1.07998 * 119.99957 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99566 * 179.97438 * 13 12 11 16 16 N 1.31505 * 120.00165 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99610 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47205 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47454 * 119.99768 * 17 15 13 20 20 H 1.48499 * 109.46992 * 240.00274 * 17 15 13 21 21 C 1.39923 * 120.00153 * 4.45919 * 11 9 8 22 22 C 1.38872 * 120.07336 * 66.79372 * 21 11 9 23 23 C 1.38113 * 119.92646 * 179.97438 * 22 21 11 24 24 C 1.38284 * 120.07236 * 359.97313 * 23 22 21 25 25 C 1.38277 * 120.14310 * 0.04475 * 24 23 22 26 26 C 1.38117 * 120.06854 * 359.96101 * 25 24 23 27 27 H 1.08002 * 120.00193 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.00170 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.99562 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47044 * 4.99883 * 3 2 1 31 31 H 1.09005 * 109.47374 * 245.00181 * 3 2 1 32 32 H 0.97003 * 120.00423 * 0.02562 * 4 3 2 33 33 H 1.09004 * 109.46647 * 60.00234 * 7 5 4 34 34 H 1.09001 * 109.46925 * 300.01087 * 7 5 4 35 35 H 1.08998 * 109.47255 * 60.00377 * 8 7 5 36 36 H 1.08998 * 109.47196 * 299.99859 * 8 7 5 37 37 H 1.09001 * 109.46670 * 30.00181 * 12 11 9 38 38 H 1.08996 * 109.47328 * 150.00546 * 12 11 9 39 39 H 0.97008 * 120.00038 * 179.97438 * 16 15 13 40 40 H 1.07996 * 120.03472 * 359.70196 * 22 21 11 41 41 H 1.07998 * 119.96255 * 179.97438 * 23 22 21 42 42 H 1.08010 * 119.92736 * 180.02562 * 24 23 22 43 43 H 1.07999 * 119.96673 * 179.97438 * 25 24 23 44 44 H 1.07999 * 120.03237 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3318 1.1314 5 6 3.7790 2.4085 1.3329 6 8 3.7152 3.3554 0.5777 7 6 4.7355 2.4363 2.4971 8 6 5.5006 3.7612 2.4970 9 6 6.4575 3.7887 3.6609 10 8 6.4508 2.8879 4.4730 11 7 7.3208 4.8144 3.7994 12 6 8.3163 4.7940 4.8741 13 6 7.7394 5.4432 6.1057 14 1 6.7318 5.8317 6.0897 15 6 8.4975 5.5402 7.2532 16 7 9.7239 5.0658 7.2731 17 14 7.7822 6.3442 8.7800 18 1 6.3943 6.7921 8.4996 19 1 7.7707 5.3648 9.8961 20 1 8.6129 7.5157 9.1579 21 6 7.2661 5.8989 2.9169 22 6 6.1642 6.7441 2.9205 23 6 6.1137 7.8140 2.0485 24 6 7.1589 8.0443 1.1729 25 6 8.2573 7.2043 1.1666 26 6 8.3140 6.1326 2.0361 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8499 -0.9354 -0.0004 30 1 1.3586 2.1315 0.0895 31 1 2.6213 1.4025 -0.9314 32 1 3.0450 0.5743 1.7352 33 1 5.4401 1.6094 2.4082 34 1 4.1773 2.3394 3.4283 35 1 4.7957 4.5878 2.5861 36 1 6.0587 3.8584 1.5658 37 1 8.5862 3.7624 5.0997 38 1 9.2043 5.3410 4.5572 39 1 10.2574 5.1343 8.0804 40 1 5.3458 6.5625 3.6013 41 1 5.2568 8.4714 2.0505 42 1 7.1171 8.8819 0.4923 43 1 9.0719 7.3866 0.4813 44 1 9.1719 5.4767 2.0304 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076691247.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:15 Heat of formation + Delta-G solvation = -50.180092 kcal Electronic energy + Delta-G solvation = -25655.479479 eV Core-core repulsion = 21958.269354 eV Total energy + Delta-G solvation = -3697.210125 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.54039 -40.67559 -39.46109 -36.84484 -36.54457 -34.83498 -34.08812 -33.45332 -31.81545 -30.85898 -29.39530 -27.86950 -25.96314 -24.47056 -23.56034 -23.26207 -21.65255 -20.73608 -20.36238 -18.82695 -18.69459 -17.72423 -17.40186 -17.22697 -17.07444 -16.94672 -16.39078 -16.10409 -15.80167 -15.48566 -15.16042 -14.78723 -14.51607 -14.28385 -14.27880 -14.10124 -13.84337 -13.58861 -13.43339 -13.30268 -13.07986 -12.94440 -12.68540 -12.42960 -12.26439 -12.12105 -12.09880 -12.04748 -11.71410 -11.12776 -10.95031 -10.67758 -10.52434 -10.10899 -10.04893 -9.81281 -9.21751 -8.25299 -6.39651 0.38033 0.51903 1.16935 1.34558 1.36184 1.48351 1.57054 1.66690 2.06312 2.35643 2.49053 2.89207 3.04548 3.49134 3.83707 3.84950 4.01491 4.07749 4.10939 4.13017 4.17121 4.32026 4.54146 4.57098 4.60968 4.67182 4.75951 4.76200 4.81149 4.91541 5.00088 5.00672 5.10243 5.16263 5.35760 5.41836 5.54494 5.63316 5.64689 5.66686 5.77496 5.77699 6.00464 6.08599 6.48685 6.64171 6.71321 7.17613 7.21386 7.35272 8.82176 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011948 B = 0.003362 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.907311 B = 8326.256641 C = 9847.626750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.183 4.183 3 C 0.144 3.856 4 N -0.717 5.717 5 C 0.520 3.480 6 O -0.576 6.576 7 C -0.119 4.119 8 C -0.105 4.105 9 C 0.507 3.493 10 O -0.573 6.573 11 N -0.564 5.564 12 C 0.265 3.735 13 C -0.539 4.539 14 H 0.050 0.950 15 C 0.009 3.991 16 N -0.927 5.927 17 Si 0.968 3.032 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.270 1.270 21 C 0.127 3.873 22 C -0.136 4.136 23 C -0.105 4.105 24 C -0.122 4.122 25 C -0.104 4.104 26 C -0.141 4.141 27 H 0.100 0.900 28 H 0.120 0.880 29 H 0.129 0.871 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.416 0.584 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.008 0.992 38 H 0.020 0.980 39 H 0.268 0.732 40 H 0.112 0.888 41 H 0.151 0.849 42 H 0.159 0.841 43 H 0.153 0.847 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.149 -3.445 -17.197 22.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.201 4.201 3 C 0.021 3.979 4 N -0.370 5.370 5 C 0.307 3.693 6 O -0.456 6.456 7 C -0.159 4.159 8 C -0.145 4.145 9 C 0.297 3.703 10 O -0.452 6.452 11 N -0.291 5.291 12 C 0.145 3.855 13 C -0.578 4.578 14 H 0.068 0.932 15 C -0.190 4.190 16 N -0.566 5.566 17 Si 0.792 3.208 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.195 1.195 21 C 0.036 3.964 22 C -0.156 4.156 23 C -0.124 4.124 24 C -0.140 4.140 25 C -0.123 4.123 26 C -0.161 4.161 27 H 0.118 0.882 28 H 0.138 0.862 29 H 0.147 0.853 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.253 0.747 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.026 0.974 38 H 0.038 0.962 39 H 0.077 0.923 40 H 0.130 0.870 41 H 0.168 0.832 42 H 0.176 0.824 43 H 0.171 0.829 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.034 -3.307 -17.180 22.429 hybrid contribution 0.239 -0.226 1.536 1.571 sum -13.795 -3.533 -15.644 21.155 Atomic orbital electron populations 1.24176 0.95630 1.03265 0.96697 1.22960 0.96429 0.97421 1.03291 1.20451 0.91540 0.96675 0.89197 1.45924 1.40156 1.19761 1.31110 1.20675 0.80751 0.82114 0.85723 1.90689 1.69498 1.36747 1.48636 1.21330 0.98212 0.98640 0.97724 1.21273 0.97382 0.99878 0.96015 1.21211 0.81091 0.80987 0.87029 1.90635 1.70320 1.38485 1.45803 1.45814 1.34801 1.18513 1.29976 1.18861 0.86386 0.96042 0.84184 1.21615 1.00038 1.38627 0.97473 0.93191 1.25824 0.95172 0.95993 1.01968 1.70045 1.09918 1.46859 1.29827 0.85365 0.78630 0.78294 0.78529 1.19284 1.20256 1.19510 1.17971 0.96700 0.89960 0.91748 1.21373 0.98281 0.95600 1.00317 1.21337 1.00024 0.96265 0.94741 1.21547 0.93049 1.00121 0.99235 1.21340 0.99371 0.93470 0.98088 1.21395 0.98383 1.00168 0.96154 0.88216 0.86187 0.85279 0.91921 0.91380 0.74678 0.87278 0.87505 0.88196 0.88403 0.97359 0.96150 0.92289 0.87001 0.83160 0.82351 0.82902 0.86583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 14.32 67.78 0.97 -0.53 16 2 C -0.18 -2.01 9.63 25.65 0.25 -1.77 16 3 C 0.14 2.36 6.11 85.63 0.52 2.89 16 4 N -0.72 -12.96 5.55 -466.80 -2.59 -15.55 16 5 C 0.52 13.17 7.83 87.66 0.69 13.86 16 6 O -0.58 -18.62 15.98 -3.03 -0.05 -18.67 16 7 C -0.12 -3.18 5.01 29.85 0.15 -3.03 16 8 C -0.11 -3.47 3.65 29.85 0.11 -3.36 16 9 C 0.51 22.06 7.53 87.66 0.66 22.72 16 10 O -0.57 -28.91 15.61 -3.04 -0.05 -28.96 16 11 N -0.56 -26.03 2.51 -635.28 -1.59 -27.62 16 12 C 0.27 14.85 5.07 85.63 0.43 15.29 16 13 C -0.54 -32.05 9.39 25.60 0.24 -31.81 16 14 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 15 C 0.01 0.56 5.46 84.66 0.46 1.02 16 16 N -0.93 -56.65 13.28 21.45 0.28 -56.37 16 17 Si 0.97 45.79 29.54 68.60 2.03 47.82 16 18 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 21 C 0.13 4.92 4.42 38.15 0.17 5.09 16 22 C -0.14 -4.64 8.46 22.39 0.19 -4.45 16 23 C -0.11 -2.76 10.04 22.25 0.22 -2.54 16 24 C -0.12 -2.79 10.04 22.29 0.22 -2.57 16 25 C -0.10 -2.68 10.04 22.25 0.22 -2.46 16 26 C -0.14 -4.77 9.64 22.39 0.22 -4.56 16 27 H 0.10 0.94 7.84 -2.91 -0.02 0.92 16 28 H 0.12 0.74 8.06 -2.91 -0.02 0.72 16 29 H 0.13 1.08 8.06 -2.91 -0.02 1.06 16 30 H 0.06 1.14 7.79 -2.39 -0.02 1.12 16 31 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.42 5.35 8.46 -92.71 -0.78 4.56 16 33 H 0.11 2.72 8.14 -2.38 -0.02 2.70 16 34 H 0.11 2.80 8.04 -2.39 -0.02 2.78 16 35 H 0.10 3.25 6.95 -2.39 -0.02 3.23 16 36 H 0.10 3.14 7.97 -2.39 -0.02 3.12 16 37 H 0.01 0.52 7.49 -2.39 -0.02 0.50 16 38 H 0.02 1.18 7.83 -2.39 -0.02 1.16 16 39 H 0.27 15.27 8.31 -92.70 -0.77 14.49 16 40 H 0.11 3.92 7.90 -2.91 -0.02 3.90 16 41 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 42 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 43 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 44 H 0.12 3.96 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -78.14 381.47 3.97 -74.18 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.21 Total: 21.39 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 5.73 Total: 3.78 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -3.90 Total: -99.54 kcal Atomic # 8 Polarization: -47.54 SS G_CDS: -0.10 Total: -47.63 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -78.14 3.97 -74.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076691247.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.999 kcal (2) G-P(sol) polarization free energy of solvation -78.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds