Wall clock time and date at job start Tue Mar 31 2020 11:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99857 * 2 1 4 4 N 1.46497 * 109.47359 * 125.00163 * 3 2 1 5 5 C 1.46504 * 119.99931 * 270.00378 * 4 3 2 6 6 C 1.50699 * 109.46412 * 269.99684 * 5 4 3 7 7 C 1.31003 * 119.99870 * 125.00532 * 6 5 4 8 8 C 1.34776 * 120.00234 * 89.99593 * 4 3 2 9 9 O 1.21586 * 120.00194 * 180.02562 * 8 4 3 10 10 N 1.34783 * 119.99844 * 0.02562 * 8 4 3 11 11 C 1.46500 * 120.00093 * 179.97438 * 10 8 4 12 12 C 1.50699 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.98024 * 12 11 10 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46814 * 90.00164 * 22 20 18 24 24 H 1.48501 * 109.47378 * 210.00272 * 22 20 18 25 25 H 1.48503 * 109.47143 * 330.00397 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99825 * 12 11 10 27 27 H 1.08007 * 119.99920 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.00195 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00195 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46876 * 4.99935 * 3 2 1 31 31 H 1.09007 * 109.46879 * 245.00131 * 3 2 1 32 32 H 1.08996 * 109.46836 * 29.99385 * 5 4 3 33 33 H 1.08995 * 109.47304 * 149.99583 * 5 4 3 34 34 H 1.07999 * 120.00402 * 304.99609 * 6 5 4 35 35 H 1.08003 * 120.00318 * 179.97438 * 7 6 5 36 36 H 1.07999 * 119.99728 * 359.97438 * 7 6 5 37 37 H 0.97004 * 119.99718 * 0.02562 * 10 8 4 38 38 H 1.09002 * 109.46490 * 60.00223 * 11 10 8 39 39 H 1.08992 * 109.46880 * 300.00477 * 11 10 8 40 40 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 41 41 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 42 42 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 43 43 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 44 44 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5588 1.8650 2.4248 6 6 2.8442 3.3436 2.4803 7 6 1.8791 4.1873 2.7503 8 6 4.2497 0.8662 0.9824 9 8 5.0216 0.8881 1.9215 10 7 4.6499 0.3762 -0.2077 11 6 6.0153 -0.1295 -0.3699 12 6 6.2063 -0.6156 -1.7835 13 6 5.9281 -1.9319 -2.1050 14 6 6.1026 -2.3819 -3.4008 15 6 6.5493 -1.5160 -4.3798 16 6 6.8349 -0.1955 -4.0591 17 8 7.2799 0.6564 -5.0177 18 6 7.5384 0.1303 -6.2320 19 1 7.3127 -0.9071 -6.4302 20 6 8.0939 0.9213 -7.2261 21 7 8.3693 2.1847 -6.9845 22 14 8.4527 0.1922 -8.9082 23 1 7.2651 0.3597 -9.7838 24 1 9.6157 0.8905 -9.5125 25 1 8.7626 -1.2531 -8.7654 26 6 6.6593 0.2533 -2.7563 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6213 1.4026 -0.9315 32 1 1.4888 1.6966 2.5458 33 1 3.0989 1.3604 3.2259 34 1 3.8444 3.7079 2.2975 35 1 2.0836 5.2470 2.7905 36 1 0.8789 3.8231 2.9328 37 1 4.0342 0.3592 -0.9571 38 1 6.1822 -0.9536 0.3238 39 1 6.7260 0.6702 -0.1619 40 1 5.5738 -2.6096 -1.3423 41 1 5.8849 -3.4102 -3.6486 42 1 6.6805 -1.8667 -5.3928 43 1 8.7582 2.7379 -7.6799 44 1 6.8770 1.2807 -2.5045 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113630097.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:25 Heat of formation + Delta-G solvation = 18.964184 kcal Electronic energy + Delta-G solvation = -25320.489389 eV Core-core repulsion = 21626.277585 eV Total energy + Delta-G solvation = -3694.211804 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.34136 -39.11776 -37.08063 -36.48984 -35.01182 -34.07846 -32.62194 -32.33296 -30.66950 -29.14532 -27.33867 -26.33408 -25.39369 -24.47991 -21.72604 -20.99801 -20.69906 -20.32754 -19.68861 -18.27013 -17.55802 -17.07976 -16.69665 -15.86901 -15.23270 -15.18344 -15.11853 -14.73094 -14.53298 -14.30299 -13.94092 -13.68591 -13.60643 -13.59158 -13.21581 -12.72632 -12.46804 -12.37997 -12.22322 -12.05867 -11.71807 -11.64382 -11.43261 -11.37986 -10.93688 -10.82821 -10.70707 -10.48687 -10.20057 -9.83420 -9.61420 -9.41965 -9.11478 -8.90301 -8.66081 -8.25940 -7.33859 -6.50089 -4.09650 1.70734 1.93575 2.03672 2.26217 2.94291 3.09333 3.10559 3.15185 3.21965 3.91648 3.95719 4.50902 4.57777 4.71901 4.77183 4.86499 4.93486 5.03281 5.06446 5.21049 5.29108 5.35992 5.50833 5.54728 5.60511 5.70606 5.77359 5.84703 5.91149 6.06027 6.10726 6.24611 6.28309 6.37683 6.42316 6.54827 6.56127 6.60839 6.81132 6.84915 6.99283 7.18822 7.26637 7.34822 7.69992 7.93701 7.94898 8.60733 8.95284 9.63963 10.67670 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.016285 B = 0.002624 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.000667 B =10667.938627 C =10937.422535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.174 4.174 3 C 0.135 3.865 4 N -0.624 5.624 5 C 0.160 3.840 6 C -0.163 4.163 7 C -0.188 4.188 8 C 0.705 3.295 9 O -0.591 6.591 10 N -0.735 5.735 11 C 0.185 3.815 12 C -0.073 4.073 13 C -0.194 4.194 14 C -0.076 4.076 15 C -0.226 4.226 16 C 0.150 3.850 17 O -0.176 6.176 18 C -0.393 4.393 19 H 0.092 0.908 20 C 0.040 3.960 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.170 4.170 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.399 0.601 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.127 0.873 43 H 0.271 0.729 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.627 -2.577 13.433 20.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.194 4.194 3 C 0.012 3.988 4 N -0.360 5.360 5 C 0.038 3.962 6 C -0.182 4.182 7 C -0.226 4.226 8 C 0.407 3.593 9 O -0.470 6.470 10 N -0.392 5.392 11 C 0.062 3.938 12 C -0.073 4.073 13 C -0.214 4.214 14 C -0.095 4.095 15 C -0.245 4.245 16 C 0.097 3.903 17 O -0.080 6.080 18 C -0.469 4.469 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.496 5.496 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.202 1.202 25 H -0.192 1.192 26 C -0.190 4.190 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.130 0.870 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.129 0.871 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.235 0.765 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.145 0.855 43 H 0.081 0.919 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.858 -2.116 13.992 19.807 hybrid contribution -0.138 -0.435 -1.413 1.485 sum -13.997 -2.551 12.580 18.991 Atomic orbital electron populations 1.23869 0.95691 1.02070 0.99848 1.23416 0.96431 0.99085 1.00437 1.20647 0.92707 0.95747 0.89683 1.47099 1.10907 1.65851 1.12143 1.20391 0.99633 0.91012 0.85210 1.23430 0.99876 0.95777 0.99128 1.23832 0.98300 0.99321 1.01150 1.15917 0.81758 0.78145 0.83482 1.90907 1.53066 1.63109 1.39869 1.45428 1.15315 1.66717 1.11696 1.20009 0.81917 0.98636 0.93246 1.19282 1.00731 0.93917 0.93396 1.20480 1.09124 0.95227 0.96519 1.20742 0.97599 0.98273 0.92843 1.21239 1.08538 0.94242 1.00513 1.19322 0.92348 0.89332 0.89343 1.83982 1.71688 1.33400 1.18901 1.21321 1.42726 0.97216 0.85684 0.89047 1.25293 0.96112 0.95424 0.99625 1.70033 1.39659 1.05646 1.34213 0.85714 0.78442 0.78946 0.80346 1.19858 1.20208 1.19176 1.20094 1.08330 1.00007 0.90574 0.88235 0.88416 0.86977 0.89581 0.89587 0.90295 0.88892 0.87105 0.88386 0.88605 0.76539 0.91103 0.91029 0.87524 0.87311 0.85483 0.91947 0.86402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.24 14.32 29.01 0.42 -0.82 16 2 C -0.17 -1.45 9.85 -36.03 -0.35 -1.81 16 3 C 0.14 1.19 5.61 -5.20 -0.03 1.17 16 4 N -0.62 -6.94 2.44 -182.18 -0.44 -7.39 16 5 C 0.16 1.57 5.85 -5.19 -0.03 1.54 16 6 C -0.16 -1.58 9.85 -36.03 -0.35 -1.94 16 7 C -0.19 -1.46 14.32 29.01 0.42 -1.05 16 8 C 0.71 10.19 8.28 -86.91 -0.72 9.47 16 9 O -0.59 -10.59 15.92 5.29 0.08 -10.50 16 10 N -0.74 -10.07 5.42 -66.42 -0.36 -10.43 16 11 C 0.19 2.79 5.80 -5.19 -0.03 2.76 16 12 C -0.07 -1.22 5.25 -104.65 -0.55 -1.77 16 13 C -0.19 -3.15 9.70 -39.53 -0.38 -3.53 16 14 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 15 C -0.23 -4.68 9.17 -39.40 -0.36 -5.04 16 16 C 0.15 3.49 6.65 -39.11 -0.26 3.23 16 17 O -0.18 -4.90 9.76 0.05 0.00 -4.90 16 18 C -0.39 -10.72 9.49 30.89 0.29 -10.43 16 19 H 0.09 2.30 5.21 -52.49 -0.27 2.02 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -24.85 13.67 55.48 0.76 -24.09 16 22 Si 0.94 20.10 29.55 -169.99 -5.02 15.08 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 24 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 26 C -0.17 -3.43 9.65 -39.39 -0.38 -3.81 16 27 H 0.10 0.63 8.06 -52.48 -0.42 0.20 16 28 H 0.10 0.57 7.84 -52.49 -0.41 0.16 16 29 H 0.11 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.09 0.63 7.72 -51.93 -0.40 0.23 16 31 H 0.09 0.79 6.36 -51.93 -0.33 0.46 16 32 H 0.08 0.59 7.72 -51.93 -0.40 0.19 16 33 H 0.09 1.04 7.42 -51.93 -0.39 0.65 16 34 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.10 0.70 8.06 -52.48 -0.42 0.28 16 36 H 0.10 0.60 7.84 -52.49 -0.41 0.19 16 37 H 0.40 4.96 6.19 -40.82 -0.25 4.71 16 38 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 39 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 40 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 42 H 0.13 2.64 5.64 -52.49 -0.30 2.35 16 43 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 380.20 15.07 5.73 5.73 Total: -1.00 -31.65 380.20 -8.17 -39.82 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -6.10 Total: 9.45 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -2.82 Total: -12.77 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: -0.05 Total: -41.91 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.08 Total: -15.40 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.65 -8.17 -39.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113630097.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.783 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds