Wall clock time and date at job start Tue Mar 31 2020 11:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99857 * 2 1 4 4 N 1.46497 * 109.47359 * 125.00163 * 3 2 1 5 5 C 1.46504 * 119.99931 * 270.00378 * 4 3 2 6 6 C 1.50699 * 109.46412 * 269.99684 * 5 4 3 7 7 C 1.31003 * 119.99870 * 125.00532 * 6 5 4 8 8 C 1.34776 * 120.00234 * 89.99593 * 4 3 2 9 9 O 1.21586 * 120.00194 * 180.02562 * 8 4 3 10 10 N 1.34783 * 119.99844 * 0.02562 * 8 4 3 11 11 C 1.46500 * 120.00093 * 179.97438 * 10 8 4 12 12 C 1.50699 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.98024 * 12 11 10 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46814 * 90.00164 * 22 20 18 24 24 H 1.48501 * 109.47378 * 210.00272 * 22 20 18 25 25 H 1.48503 * 109.47143 * 330.00397 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99825 * 12 11 10 27 27 H 1.08007 * 119.99920 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.00195 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00195 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46876 * 4.99935 * 3 2 1 31 31 H 1.09007 * 109.46879 * 245.00131 * 3 2 1 32 32 H 1.08996 * 109.46836 * 29.99385 * 5 4 3 33 33 H 1.08995 * 109.47304 * 149.99583 * 5 4 3 34 34 H 1.07999 * 120.00402 * 304.99609 * 6 5 4 35 35 H 1.08003 * 120.00318 * 179.97438 * 7 6 5 36 36 H 1.07999 * 119.99728 * 359.97438 * 7 6 5 37 37 H 0.97004 * 119.99718 * 0.02562 * 10 8 4 38 38 H 1.09002 * 109.46490 * 60.00223 * 11 10 8 39 39 H 1.08992 * 109.46880 * 300.00477 * 11 10 8 40 40 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 41 41 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 42 42 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 43 43 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 44 44 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5588 1.8650 2.4248 6 6 2.8442 3.3436 2.4803 7 6 1.8791 4.1873 2.7503 8 6 4.2497 0.8662 0.9824 9 8 5.0216 0.8881 1.9215 10 7 4.6499 0.3762 -0.2077 11 6 6.0153 -0.1295 -0.3699 12 6 6.2063 -0.6156 -1.7835 13 6 5.9281 -1.9319 -2.1050 14 6 6.1026 -2.3819 -3.4008 15 6 6.5493 -1.5160 -4.3798 16 6 6.8349 -0.1955 -4.0591 17 8 7.2799 0.6564 -5.0177 18 6 7.5384 0.1303 -6.2320 19 1 7.3127 -0.9071 -6.4302 20 6 8.0939 0.9213 -7.2261 21 7 8.3693 2.1847 -6.9845 22 14 8.4527 0.1922 -8.9082 23 1 7.2651 0.3597 -9.7838 24 1 9.6157 0.8905 -9.5125 25 1 8.7626 -1.2531 -8.7654 26 6 6.6593 0.2533 -2.7563 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6213 1.4026 -0.9315 32 1 1.4888 1.6966 2.5458 33 1 3.0989 1.3604 3.2259 34 1 3.8444 3.7079 2.2975 35 1 2.0836 5.2470 2.7905 36 1 0.8789 3.8231 2.9328 37 1 4.0342 0.3592 -0.9571 38 1 6.1822 -0.9536 0.3238 39 1 6.7260 0.6702 -0.1619 40 1 5.5738 -2.6096 -1.3423 41 1 5.8849 -3.4102 -3.6486 42 1 6.6805 -1.8667 -5.3928 43 1 8.7582 2.7379 -7.6799 44 1 6.8770 1.2807 -2.5045 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113630097.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:24 Heat of formation + Delta-G solvation = 0.431404 kcal Electronic energy + Delta-G solvation = -25321.293031 eV Core-core repulsion = 21626.277585 eV Total energy + Delta-G solvation = -3695.015445 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.44258 -40.74884 -38.59044 -37.57493 -36.05982 -35.02557 -34.28278 -33.41620 -32.04965 -30.75751 -28.18278 -27.58212 -27.07087 -25.60810 -23.26969 -22.49139 -21.66730 -20.99732 -20.67905 -19.63654 -19.06450 -18.55032 -17.78114 -16.93947 -16.71169 -16.37992 -16.14547 -16.09659 -15.80972 -15.64567 -15.40281 -15.06589 -14.90053 -14.31695 -14.27438 -14.16146 -13.83797 -13.68835 -13.36206 -13.17845 -13.01375 -12.88073 -12.52463 -12.37279 -12.35709 -12.27682 -12.11675 -12.07081 -11.37963 -11.20645 -10.81128 -10.48985 -10.30296 -10.26567 -9.77952 -9.59847 -9.03941 -8.46939 -6.15548 0.35575 0.70010 1.09090 1.35858 1.38661 1.44707 1.53215 1.97982 2.09970 2.17532 2.78086 3.02021 3.19404 3.39959 3.81529 3.91956 4.02800 4.08669 4.09442 4.16512 4.30592 4.38153 4.41783 4.49680 4.52581 4.66237 4.72530 4.73078 4.79057 5.01133 5.03068 5.04852 5.11675 5.25095 5.32725 5.39884 5.61799 5.68540 5.70223 5.70788 5.71701 5.79658 5.86906 5.88333 6.01676 6.16189 6.88901 6.97852 7.49772 7.78088 8.76184 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.016285 B = 0.002624 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.000667 B =10667.938627 C =10937.422535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.192 4.192 3 C 0.135 3.865 4 N -0.617 5.617 5 C 0.162 3.838 6 C -0.190 4.190 7 C -0.161 4.161 8 C 0.701 3.299 9 O -0.631 6.631 10 N -0.730 5.730 11 C 0.192 3.808 12 C -0.058 4.058 13 C -0.167 4.167 14 C -0.068 4.068 15 C -0.233 4.233 16 C 0.114 3.886 17 O -0.232 6.232 18 C -0.412 4.412 19 H 0.104 0.896 20 C -0.023 4.023 21 N -0.921 5.921 22 Si 1.018 2.982 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.252 1.252 26 C -0.181 4.181 27 H 0.108 0.892 28 H 0.113 0.887 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.406 0.594 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.122 0.878 43 H 0.272 0.728 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.409 -4.862 14.281 23.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.212 4.212 3 C 0.012 3.988 4 N -0.352 5.352 5 C 0.039 3.961 6 C -0.209 4.209 7 C -0.199 4.199 8 C 0.403 3.597 9 O -0.513 6.513 10 N -0.387 5.387 11 C 0.068 3.932 12 C -0.059 4.059 13 C -0.186 4.186 14 C -0.086 4.086 15 C -0.253 4.253 16 C 0.063 3.937 17 O -0.139 6.139 18 C -0.488 4.488 19 H 0.121 0.879 20 C -0.221 4.221 21 N -0.559 5.559 22 Si 0.837 3.163 23 H -0.187 1.187 24 H -0.199 1.199 25 H -0.176 1.176 26 C -0.201 4.201 27 H 0.126 0.874 28 H 0.132 0.868 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.097 0.903 32 H 0.127 0.873 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.122 0.878 36 H 0.138 0.862 37 H 0.243 0.757 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.165 0.835 41 H 0.167 0.833 42 H 0.139 0.861 43 H 0.081 0.919 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.707 -4.433 14.871 22.802 hybrid contribution 0.511 0.185 -1.338 1.444 sum -16.196 -4.248 13.533 21.529 Atomic orbital electron populations 1.24077 0.95149 1.03267 0.97210 1.23258 0.96898 0.98158 1.02843 1.20791 0.92503 0.97048 0.88411 1.47186 1.10027 1.64629 1.13369 1.20489 1.00941 0.90706 0.83919 1.23242 0.99281 0.96142 1.02269 1.24050 0.98716 0.99332 0.97788 1.16083 0.82572 0.78141 0.82941 1.90876 1.54544 1.64755 1.41092 1.45251 1.14797 1.66715 1.11926 1.19871 0.82554 0.98721 0.92019 1.19429 0.99127 0.93960 0.93377 1.20981 1.05664 0.94947 0.97004 1.21157 0.95745 0.99528 0.92194 1.21377 1.08827 0.93715 1.01358 1.19830 0.93670 0.90489 0.89684 1.83950 1.74624 1.35411 1.19906 1.21828 1.42911 0.97967 0.86140 0.87867 1.26583 0.95718 0.95757 1.03993 1.70185 1.42305 1.07558 1.35883 0.84596 0.78471 0.78646 0.74573 1.18724 1.19852 1.17553 1.20203 1.09100 1.00265 0.90495 0.87389 0.86847 0.88049 0.87572 0.90326 0.87266 0.90809 0.89916 0.87785 0.86158 0.75712 0.89759 0.92338 0.83524 0.83260 0.86061 0.91889 0.87653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 14.32 67.78 0.97 -0.72 16 2 C -0.19 -2.75 9.85 25.65 0.25 -2.49 16 3 C 0.13 2.13 5.61 85.63 0.48 2.61 16 4 N -0.62 -13.15 2.44 -848.56 -2.07 -15.22 16 5 C 0.16 2.98 5.85 85.63 0.50 3.48 16 6 C -0.19 -3.56 9.85 25.64 0.25 -3.31 16 7 C -0.16 -2.12 14.32 67.78 0.97 -1.15 16 8 C 0.70 20.09 8.28 179.05 1.48 21.57 16 9 O -0.63 -22.94 15.92 -3.99 -0.06 -23.00 16 10 N -0.73 -19.46 5.42 -482.30 -2.61 -22.07 16 11 C 0.19 5.60 5.80 85.63 0.50 6.10 16 12 C -0.06 -1.89 5.25 -19.88 -0.10 -1.99 16 13 C -0.17 -4.80 9.70 22.30 0.22 -4.58 16 14 C -0.07 -2.14 10.04 22.25 0.22 -1.91 16 15 C -0.23 -9.57 9.17 22.39 0.21 -9.37 16 16 C 0.11 5.46 6.65 22.58 0.15 5.61 16 17 O -0.23 -13.72 9.76 -22.74 -0.22 -13.94 16 18 C -0.41 -23.53 9.49 67.92 0.64 -22.88 16 19 H 0.10 5.34 5.21 -2.91 -0.02 5.33 16 20 C -0.02 -1.29 5.49 84.83 0.47 -0.83 16 21 N -0.92 -56.21 13.67 21.61 0.30 -55.91 16 22 Si 1.02 42.14 29.55 68.60 2.03 44.17 16 23 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 24 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 25 H -0.25 -9.63 7.11 99.48 0.71 -8.93 16 26 C -0.18 -7.50 9.65 22.39 0.22 -7.29 16 27 H 0.11 0.99 8.06 -2.91 -0.02 0.97 16 28 H 0.11 0.86 7.84 -2.91 -0.02 0.84 16 29 H 0.10 1.67 8.06 -2.91 -0.02 1.65 16 30 H 0.11 1.26 7.72 -2.39 -0.02 1.24 16 31 H 0.08 1.35 6.36 -2.38 -0.02 1.34 16 32 H 0.11 1.32 7.72 -2.39 -0.02 1.30 16 33 H 0.07 1.65 7.42 -2.39 -0.02 1.63 16 34 H 0.08 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.10 1.26 8.06 -2.91 -0.02 1.23 16 36 H 0.12 1.02 7.84 -2.91 -0.02 1.00 16 37 H 0.41 9.69 6.19 -92.71 -0.57 9.11 16 38 H 0.08 2.28 8.09 -2.39 -0.02 2.26 16 39 H 0.06 1.88 8.08 -2.39 -0.02 1.86 16 40 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 41 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 42 H 0.12 5.05 5.64 -2.91 -0.02 5.04 16 43 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 44 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -74.69 380.20 5.20 -69.48 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: 0.43 Total: 33.65 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 7.42 Total: -17.16 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -4.39 Total: -93.20 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -0.29 Total: -36.95 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -74.69 5.20 -69.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113630097.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.912 kcal (2) G-P(sol) polarization free energy of solvation -74.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds