Wall clock time and date at job start Tue Mar 31 2020 11:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46845 * 2 1 4 4 N 1.46503 * 109.46942 * 179.97438 * 3 2 1 5 5 C 1.36936 * 120.00490 * 270.00540 * 4 3 2 6 6 H 1.07999 * 120.00333 * 140.19353 * 5 4 3 7 7 C 1.38811 * 119.99514 * 320.19781 * 5 4 3 8 8 N 1.31617 * 120.00142 * 156.68088 * 7 5 4 9 9 Si 1.86803 * 120.00315 * 336.67663 * 7 5 4 10 10 H 1.48494 * 109.47142 * 95.20186 * 9 7 5 11 11 H 1.48497 * 109.47170 * 215.20528 * 9 7 5 12 12 H 1.48502 * 109.47024 * 335.19886 * 9 7 5 13 13 C 1.46498 * 119.99655 * 90.00192 * 4 3 2 14 14 C 1.53002 * 109.47339 * 264.57818 * 13 4 3 15 15 C 1.52995 * 109.46961 * 184.08432 * 14 13 4 16 16 N 1.46505 * 109.47195 * 175.67884 * 15 14 13 17 17 C 1.34525 * 124.46036 * 270.33204 * 16 15 14 18 18 O 1.21456 * 125.70911 * 359.75596 * 17 16 15 19 19 C 1.47811 * 108.58163 * 180.12523 * 17 16 15 20 20 C 1.38569 * 134.29861 * 179.87742 * 19 17 16 21 21 C 1.38614 * 119.71871 * 179.64901 * 20 19 17 22 22 C 1.38232 * 120.45456 * 0.03773 * 21 20 19 23 23 C 1.38603 * 120.46593 * 359.97438 * 22 21 20 24 24 C 1.38566 * 119.71920 * 0.02562 * 23 22 21 25 25 C 1.34520 * 124.45915 * 89.99603 * 16 15 14 26 26 O 1.21448 * 125.71545 * 0.06293 * 25 16 15 27 27 H 1.09006 * 109.47470 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47713 * 299.99798 * 1 2 3 29 29 H 1.09005 * 109.47658 * 59.99696 * 1 2 3 30 30 H 1.09000 * 109.46971 * 240.00153 * 2 1 3 31 31 H 1.08998 * 109.46865 * 120.00012 * 2 1 3 32 32 H 1.09004 * 109.46733 * 60.00168 * 3 2 1 33 33 H 1.08995 * 109.47405 * 300.00460 * 3 2 1 34 34 H 0.96998 * 120.00840 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47317 * 144.57454 * 13 4 3 36 36 H 1.09008 * 109.47126 * 24.57970 * 13 4 3 37 37 H 1.09002 * 109.46893 * 64.08380 * 14 13 4 38 38 H 1.08991 * 109.46696 * 304.08533 * 14 13 4 39 39 H 1.09001 * 109.47170 * 55.67918 * 15 14 13 40 40 H 1.08997 * 109.47761 * 295.67672 * 15 14 13 41 41 H 1.08002 * 120.13901 * 359.66920 * 20 19 17 42 42 H 1.07991 * 119.76973 * 180.02562 * 21 20 19 43 43 H 1.08008 * 119.76190 * 180.02562 * 22 21 20 44 44 H 1.07996 * 120.14167 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1892 1.4426 1.1867 6 1 5.0815 0.8439 1.2955 7 6 3.7360 2.2123 2.2493 8 7 4.0721 1.8956 3.4818 9 14 2.6490 3.6976 1.9301 10 1 1.2233 3.3071 2.0717 11 1 2.9696 4.7655 2.9109 12 1 2.8901 4.2009 0.5540 13 6 4.2379 1.4424 -1.2678 14 6 4.6111 0.0064 -1.6411 15 6 5.4635 0.0148 -2.9116 16 7 5.9069 -1.3490 -3.2113 17 6 7.0448 -1.8982 -2.7498 18 8 7.8571 -1.3491 -2.0330 19 6 7.1457 -3.2787 -3.2682 20 6 8.0750 -4.2977 -3.1334 21 6 7.8592 -5.5126 -3.7648 22 6 6.7243 -5.7138 -4.5278 23 6 5.7861 -4.7037 -4.6719 24 6 5.9886 -3.4839 -4.0465 25 6 5.2264 -2.2191 -3.9791 26 8 4.1641 -2.0017 -4.5261 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6765 1.9563 0.8900 33 1 1.6765 1.9564 -0.8899 34 1 3.7552 2.4331 4.2244 35 1 5.1448 2.0381 -1.1636 36 1 3.6105 1.8698 -2.0501 37 1 3.7034 -0.5711 -1.8164 38 1 5.1774 -0.4452 -0.8266 39 1 6.3330 0.6548 -2.7615 40 1 4.8715 0.3955 -3.7439 41 1 8.9637 -4.1459 -2.5386 42 1 8.5827 -6.3074 -3.6599 43 1 6.5671 -6.6650 -5.0146 44 1 4.9015 -4.8664 -5.2696 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118004554.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:36 Heat of formation + Delta-G solvation = -22.929053 kcal Electronic energy + Delta-G solvation = -26136.274197 eV Core-core repulsion = 22440.245766 eV Total energy + Delta-G solvation = -3696.028431 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.39907 -39.81125 -39.52674 -38.55632 -37.11419 -35.00855 -34.37534 -33.12394 -32.11443 -31.37494 -27.78605 -27.39054 -26.21429 -25.07113 -23.41758 -23.21350 -22.32022 -22.13055 -20.91749 -18.89431 -18.75643 -18.38261 -17.70347 -17.44533 -17.10770 -16.47040 -16.14861 -15.89087 -15.60075 -15.40933 -15.27935 -15.20734 -15.03448 -14.76273 -14.61169 -14.17458 -14.10620 -13.63778 -13.27580 -13.23598 -13.05631 -12.88708 -12.72863 -12.60568 -12.39073 -12.33355 -11.93853 -11.79100 -11.62944 -11.57040 -11.45206 -11.21748 -11.02431 -10.60143 -10.21499 -10.18904 -8.74766 -8.23324 -5.63875 -1.02825 -0.00349 0.97162 1.23615 1.29608 1.39378 1.51882 1.80469 2.40743 2.57750 2.63464 2.98627 3.19112 3.33703 3.60301 3.81066 4.03834 4.06746 4.12023 4.17319 4.19003 4.25209 4.30730 4.35840 4.38001 4.49826 4.55515 4.65410 4.72684 4.78829 4.82629 4.85311 4.94199 5.05185 5.09679 5.15855 5.22302 5.27572 5.31309 5.38722 5.49871 5.57639 5.71340 5.93652 6.06170 6.16002 6.50395 6.98936 7.61228 8.03863 8.96761 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018097 B = 0.003279 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.810145 B = 8538.382384 C = 9168.100520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.130 3.870 4 N -0.616 5.616 5 C -0.260 4.260 6 H 0.029 0.971 7 C -0.016 4.016 8 N -0.948 5.948 9 Si 0.945 3.055 10 H -0.272 1.272 11 H -0.307 1.307 12 H -0.255 1.255 13 C 0.151 3.849 14 C -0.135 4.135 15 C 0.115 3.885 16 N -0.579 5.579 17 C 0.564 3.436 18 O -0.498 6.498 19 C -0.162 4.162 20 C -0.049 4.049 21 C -0.082 4.082 22 C -0.081 4.081 23 C -0.044 4.044 24 C -0.160 4.160 25 C 0.571 3.429 26 O -0.490 6.490 27 H 0.063 0.937 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.029 0.971 32 H 0.033 0.967 33 H 0.068 0.932 34 H 0.264 0.736 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.030 0.970 39 H 0.097 0.903 40 H 0.114 0.886 41 H 0.150 0.850 42 H 0.182 0.818 43 H 0.184 0.816 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.701 -16.566 -21.395 27.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.006 3.994 4 N -0.339 5.339 5 C -0.390 4.390 6 H 0.046 0.954 7 C -0.213 4.213 8 N -0.591 5.591 9 Si 0.773 3.227 10 H -0.199 1.199 11 H -0.235 1.235 12 H -0.179 1.179 13 C 0.025 3.975 14 C -0.175 4.175 15 C -0.005 4.005 16 N -0.320 5.320 17 C 0.356 3.644 18 O -0.372 6.372 19 C -0.166 4.166 20 C -0.067 4.067 21 C -0.100 4.100 22 C -0.099 4.099 23 C -0.062 4.062 24 C -0.163 4.163 25 C 0.362 3.638 26 O -0.364 6.364 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.049 0.951 39 H 0.116 0.884 40 H 0.132 0.868 41 H 0.168 0.832 42 H 0.199 0.801 43 H 0.202 0.798 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.538 -15.979 -21.136 26.731 hybrid contribution -0.258 1.119 1.007 1.527 sum 3.279 -14.860 -20.129 25.234 Atomic orbital electron populations 1.21696 0.94336 1.02094 1.01886 1.21955 0.96404 0.98575 1.00303 1.21382 0.83046 0.95566 0.99417 1.44208 1.01276 1.86510 1.01862 1.18482 1.09645 1.21188 0.89686 0.95365 1.26136 1.00223 1.00295 0.94629 1.70029 1.49857 1.40110 0.99107 0.85804 0.78574 0.80218 0.78093 1.19906 1.23518 1.17928 1.20900 0.96362 0.93064 0.87219 1.22341 0.98784 1.00987 0.95427 1.21823 1.00407 0.79242 0.99003 1.46755 1.22394 1.16253 1.46609 1.18999 0.79976 0.87332 0.78137 1.90804 1.43173 1.69148 1.34061 1.20543 0.99053 0.94261 1.02707 1.21182 0.97483 0.91170 0.96912 1.21964 0.98221 0.96158 0.93614 1.21986 0.91920 0.99708 0.96261 1.21194 1.00349 0.89159 0.95538 1.20565 0.96301 0.95787 1.03689 1.18821 0.83576 0.84924 0.76433 1.90766 1.20328 1.80804 1.44505 0.91826 0.93656 0.91189 0.92446 0.95240 0.94885 0.91349 0.92755 0.93338 0.90606 0.92448 0.95114 0.88434 0.86763 0.83184 0.80080 0.79845 0.82449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.39 9.91 71.98 0.71 -3.67 16 2 C -0.13 -5.20 6.26 30.59 0.19 -5.01 16 3 C 0.13 5.62 4.56 86.38 0.39 6.02 16 4 N -0.62 -29.84 2.04 -701.98 -1.43 -31.27 16 5 C -0.26 -15.38 9.87 84.03 0.83 -14.55 16 6 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 7 C -0.02 -0.97 5.27 84.86 0.45 -0.52 16 8 N -0.95 -61.07 13.97 21.65 0.30 -60.77 16 9 Si 0.95 47.16 25.24 68.60 1.73 48.90 16 10 H -0.27 -12.89 6.67 99.48 0.66 -12.23 16 11 H -0.31 -15.45 7.11 99.48 0.71 -14.74 16 12 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 13 C 0.15 5.95 5.72 86.38 0.49 6.45 16 14 C -0.13 -5.02 5.83 30.59 0.18 -4.85 16 15 C 0.12 3.50 5.74 86.38 0.50 4.00 16 16 N -0.58 -17.66 2.62 -762.95 -2.00 -19.66 16 17 C 0.56 17.62 8.02 86.82 0.70 18.32 16 18 O -0.50 -18.79 17.68 -3.58 -0.06 -18.86 16 19 C -0.16 -3.74 6.40 -20.00 -0.13 -3.87 16 20 C -0.05 -0.74 10.09 22.44 0.23 -0.51 16 21 C -0.08 -0.59 10.04 22.36 0.22 -0.36 16 22 C -0.08 -0.52 10.03 22.36 0.22 -0.30 16 23 C -0.04 -0.58 10.09 22.44 0.23 -0.35 16 24 C -0.16 -3.48 6.41 -20.00 -0.13 -3.61 16 25 C 0.57 16.26 8.02 86.82 0.70 16.96 16 26 O -0.49 -15.72 17.68 -3.55 -0.06 -15.78 16 27 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.06 2.15 6.76 -2.39 -0.02 2.13 16 31 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.03 1.56 3.64 -2.39 -0.01 1.55 16 33 H 0.07 2.51 7.86 -2.39 -0.02 2.49 16 34 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 35 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 36 H 0.08 2.50 7.83 -2.38 -0.02 2.48 16 37 H 0.06 2.16 6.76 -2.39 -0.02 2.15 16 38 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.10 2.90 7.97 -2.39 -0.02 2.88 16 40 H 0.11 2.95 7.96 -2.39 -0.02 2.93 16 41 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 42 H 0.18 -0.09 8.06 -2.91 -0.02 -0.11 16 43 H 0.18 -0.30 8.06 -2.91 -0.02 -0.33 16 44 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -80.54 368.57 5.22 -75.33 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 0.96 Total: 7.97 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 5.78 Total: 14.14 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -3.13 Total: -111.69 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -0.13 Total: -34.63 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 1.73 Total: 48.90 kcal Total: -80.54 5.22 -75.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118004554.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.396 kcal (2) G-P(sol) polarization free energy of solvation -80.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds