Wall clock time and date at job start Tue Mar 31 2020 10:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47107 * 2 1 4 4 H 1.09000 * 109.47274 * 304.99847 * 3 2 1 5 5 C 1.52997 * 109.46771 * 185.00163 * 3 2 1 6 6 C 1.50698 * 109.47311 * 65.00108 * 5 3 2 7 7 O 1.21289 * 120.00172 * 359.97438 * 6 5 3 8 8 N 1.34776 * 119.99709 * 179.97438 * 6 5 3 9 9 C 1.37100 * 119.99960 * 179.97438 * 8 6 5 10 10 H 1.08003 * 120.00153 * 20.20850 * 9 8 6 11 11 C 1.38948 * 120.00464 * 200.21484 * 9 8 6 12 12 N 1.31422 * 119.99740 * 21.43364 * 11 9 8 13 13 Si 1.86798 * 120.00360 * 201.43286 * 11 9 8 14 14 H 1.48495 * 109.47024 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46669 * 119.99976 * 13 11 9 16 16 H 1.48491 * 109.47232 * 239.99700 * 13 11 9 17 17 C 1.46503 * 120.00280 * 359.97438 * 8 6 5 18 18 C 1.47208 * 109.47026 * 83.95413 * 17 8 6 19 19 N 5.38396 * 168.42467 * 129.55799 * 2 1 3 20 20 C 1.50702 * 109.47220 * 64.99925 * 3 2 1 21 21 C 1.38265 * 119.94157 * 59.72784 * 20 3 2 22 22 C 1.38142 * 120.05147 * 179.72566 * 21 20 3 23 23 C 1.38728 * 119.94526 * 0.54791 * 22 21 20 24 24 O 1.35902 * 120.05848 * 179.74852 * 23 22 21 25 25 C 1.42904 * 116.99923 * 359.97438 * 24 23 22 26 26 C 1.38737 * 119.88970 * 359.72321 * 23 22 21 27 27 C 1.38146 * 119.93832 * 0.02562 * 26 23 22 28 28 H 1.09000 * 109.47013 * 299.99920 * 1 2 3 29 29 H 1.09002 * 109.46813 * 60.00155 * 1 2 3 30 30 H 1.08997 * 109.47014 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46813 * 119.99845 * 2 1 3 32 32 H 1.09000 * 109.47013 * 240.00080 * 2 1 3 33 33 H 1.09008 * 109.46949 * 185.00241 * 5 3 2 34 34 H 1.09004 * 109.47436 * 304.99806 * 5 3 2 35 35 H 0.97000 * 119.99831 * 180.02562 * 12 11 9 36 36 H 1.09001 * 109.47385 * 203.95010 * 17 8 6 37 37 H 1.08995 * 109.47162 * 323.95493 * 17 8 6 38 38 H 1.07997 * 119.97454 * 359.97438 * 21 20 3 39 39 H 1.08004 * 120.02668 * 180.27213 * 22 21 20 40 40 H 1.09002 * 109.47273 * 300.00481 * 25 24 23 41 41 H 1.09004 * 109.47074 * 60.00087 * 25 24 23 42 42 H 1.08996 * 109.47114 * 179.97438 * 25 24 23 43 43 H 1.07995 * 120.02797 * 179.97438 * 26 23 22 44 44 H 1.08000 * 119.96600 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1258 6 6 3.9589 0.8821 -1.4673 7 8 3.1043 0.5156 -2.2460 8 7 5.2610 0.7866 -1.8017 9 6 5.6196 0.2746 -3.0219 10 1 4.9032 0.2522 -3.8298 11 6 6.9047 -0.2155 -3.2193 12 7 7.6330 -0.5837 -2.1892 13 14 7.5973 -0.3510 -4.9489 14 1 6.5856 0.1253 -5.9259 15 1 8.8215 0.4826 -5.0585 16 1 7.9358 -1.7678 -5.2369 17 6 6.2933 1.2298 -0.8613 18 6 6.5825 0.1487 0.0951 19 7 6.8045 -0.6880 0.8329 20 6 1.6414 2.1163 1.2877 21 6 2.0729 1.6038 2.4972 22 6 1.7135 2.2229 3.6786 23 6 0.9095 3.3531 3.6515 24 8 0.5503 3.9610 4.8127 25 6 1.0362 3.3819 6.0254 26 6 0.4732 3.8622 2.4369 27 6 0.8397 3.2423 1.2579 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.9356 2.4655 -0.0366 34 1 3.9955 0.8310 0.6659 35 1 8.5302 -0.9255 -2.3269 36 1 7.2008 1.4817 -1.4101 37 1 5.9397 2.1079 -0.3210 38 1 2.6948 0.7210 2.5180 39 1 2.0545 1.8247 4.6229 40 1 0.6763 2.3564 6.1081 41 1 2.1262 3.3849 6.0182 42 1 0.6773 3.9630 6.8748 43 1 -0.1531 4.7416 2.4131 44 1 0.5006 3.6385 0.3121 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120856810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:04 Heat of formation + Delta-G solvation = -22.258545 kcal Electronic energy + Delta-G solvation = -26313.219781 eV Core-core repulsion = 22617.220426 eV Total energy + Delta-G solvation = -3695.999355 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.29929 -39.14232 -37.88268 -35.92254 -34.83546 -34.10413 -31.92064 -31.07284 -30.40053 -29.26877 -27.51208 -27.24482 -25.25439 -23.56070 -22.93010 -21.93790 -20.09592 -18.79459 -18.22628 -17.88389 -16.77584 -16.32347 -16.08533 -15.85444 -15.16296 -14.70678 -14.45859 -14.31913 -14.19490 -13.88719 -13.69698 -13.50825 -13.13339 -12.96323 -12.70498 -12.55743 -12.43831 -12.08688 -11.89634 -11.73373 -11.53528 -11.38812 -11.19786 -11.14107 -11.01954 -10.97613 -10.60974 -10.51690 -10.39630 -10.30432 -10.21524 -10.14580 -9.24259 -8.97231 -8.49413 -8.04141 -7.99377 -6.49826 -4.00276 1.37022 1.45881 3.08765 3.17097 3.22452 3.28355 3.56132 3.76919 3.82890 3.97632 4.12391 4.69625 4.74379 4.86310 4.88912 4.94778 4.95222 5.09862 5.20443 5.22727 5.25111 5.42535 5.46117 5.48362 5.59510 5.65599 5.71866 5.87158 5.90100 5.99846 6.06435 6.16813 6.26907 6.29051 6.36690 6.40100 6.42723 6.47040 6.59896 6.76901 6.85727 6.94976 7.33381 7.47782 7.93514 8.29252 8.74471 9.01991 9.21098 9.76336 10.56496 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019795 B = 0.003283 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.164524 B = 8526.105831 C = 9229.586631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.024 4.024 4 H 0.085 0.915 5 C -0.130 4.130 6 C 0.459 3.541 7 O -0.568 6.568 8 N -0.445 5.445 9 C -0.313 4.313 10 H 0.108 0.892 11 C 0.032 3.968 12 N -0.876 5.876 13 Si 0.924 3.076 14 H -0.267 1.267 15 H -0.279 1.279 16 H -0.283 1.283 17 C 0.222 3.778 18 C 0.246 3.754 19 N -0.473 5.473 20 C -0.097 4.097 21 C -0.074 4.074 22 C -0.205 4.205 23 C 0.113 3.887 24 O -0.322 6.322 25 C 0.028 3.972 26 C -0.151 4.151 27 C -0.078 4.078 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.272 0.728 36 H 0.123 0.877 37 H 0.084 0.916 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.097 0.903 43 H 0.127 0.873 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.493 9.481 11.056 17.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C -0.043 4.043 4 H 0.104 0.896 5 C -0.171 4.171 6 C 0.248 3.752 7 O -0.450 6.450 8 N -0.166 5.166 9 C -0.440 4.440 10 H 0.125 0.875 11 C -0.172 4.172 12 N -0.515 5.515 13 Si 0.751 3.249 14 H -0.191 1.191 15 H -0.205 1.205 16 H -0.210 1.210 17 C 0.094 3.906 18 C -0.072 4.072 19 N -0.153 5.153 20 C -0.098 4.098 21 C -0.092 4.092 22 C -0.223 4.223 23 C 0.068 3.932 24 O -0.236 6.236 25 C -0.067 4.067 26 C -0.169 4.169 27 C -0.096 4.096 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.141 0.859 37 H 0.102 0.898 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.115 0.885 43 H 0.145 0.855 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.516 8.151 11.791 17.205 hybrid contribution 0.847 -0.181 -0.770 1.159 sum -8.668 7.969 11.020 16.128 Atomic orbital electron populations 1.21712 0.96438 1.00818 1.01182 1.21713 0.95394 0.95559 1.03185 1.19858 0.94149 0.96637 0.93659 0.89635 1.21712 0.96270 1.01916 0.97156 1.20145 0.82902 0.83623 0.88516 1.90509 1.48849 1.52976 1.52692 1.43653 1.02918 1.55229 1.14779 1.19721 0.97649 1.38819 0.87832 0.87471 1.25281 0.97245 0.95391 0.99278 1.69857 1.11566 1.39857 1.30229 0.85892 0.78849 0.77904 0.82263 1.19119 1.20521 1.20961 1.18680 0.95622 0.88646 0.87637 1.29360 0.92081 0.94422 0.91378 1.80947 1.09660 1.09606 1.15120 1.19930 0.98583 0.96071 0.95167 1.20855 0.98158 0.98957 0.91269 1.21193 1.03661 0.98072 0.99412 1.19003 0.95581 0.92575 0.86021 1.86039 1.71187 1.53402 1.12948 1.23014 0.99579 0.99223 0.84869 1.20373 1.04489 1.02373 0.89699 1.20916 0.96615 0.94656 0.97378 0.93431 0.92828 0.93461 0.93114 0.88947 0.89981 0.90388 0.91762 0.85936 0.89791 0.85805 0.85816 0.92775 0.92683 0.88508 0.85546 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.73 37.16 0.36 -1.64 16 2 C -0.12 -1.95 5.08 -26.73 -0.14 -2.08 16 3 C -0.02 -0.37 1.68 -91.77 -0.15 -0.52 16 4 H 0.09 1.35 7.69 -51.93 -0.40 0.95 16 5 C -0.13 -2.16 3.52 -27.89 -0.10 -2.25 16 6 C 0.46 9.87 7.24 -10.99 -0.08 9.79 16 7 O -0.57 -13.85 13.66 5.55 0.08 -13.78 16 8 N -0.45 -10.06 2.60 -117.93 -0.31 -10.37 16 9 C -0.31 -7.89 9.27 -14.93 -0.14 -8.03 16 10 H 0.11 2.86 7.43 -52.48 -0.39 2.47 16 11 C 0.03 0.77 4.84 -17.46 -0.08 0.69 16 12 N -0.88 -21.99 9.58 55.50 0.53 -21.45 16 13 Si 0.92 19.46 29.60 -169.99 -5.03 14.43 16 14 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 15 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 C 0.22 4.29 4.91 -6.82 -0.03 4.26 16 18 C 0.25 5.32 12.83 -20.71 -0.27 5.06 16 19 N -0.47 -11.06 18.55 42.21 0.78 -10.28 16 20 C -0.10 -1.29 3.76 -104.60 -0.39 -1.68 16 21 C -0.07 -0.96 8.70 -39.61 -0.34 -1.30 16 22 C -0.20 -2.43 9.04 -39.44 -0.36 -2.78 16 23 C 0.11 1.37 6.69 -39.22 -0.26 1.11 16 24 O -0.32 -3.64 10.50 -19.43 -0.20 -3.84 16 25 C 0.03 0.21 9.81 101.05 0.99 1.21 16 26 C -0.15 -1.78 9.99 -39.43 -0.39 -2.17 16 27 C -0.08 -0.94 9.66 -39.61 -0.38 -1.32 16 28 H 0.05 0.62 7.38 -51.93 -0.38 0.24 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.79 7.20 -51.93 -0.37 0.41 16 32 H 0.09 1.80 5.88 -51.93 -0.31 1.50 16 33 H 0.08 1.18 7.42 -51.92 -0.39 0.79 16 34 H 0.08 1.30 6.93 -51.93 -0.36 0.94 16 35 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 36 H 0.12 2.43 6.63 -51.93 -0.34 2.08 16 37 H 0.08 1.24 6.69 -51.93 -0.35 0.89 16 38 H 0.12 1.59 7.12 -52.49 -0.37 1.22 16 39 H 0.12 1.23 6.30 -52.48 -0.33 0.89 16 40 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 41 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 44 H 0.13 1.35 7.94 -52.49 -0.42 0.94 16 LS Contribution 363.28 15.07 5.47 5.47 Total: -1.00 -30.29 363.28 -6.48 -36.77 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -6.03 Total: 4.74 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -1.77 Total: -1.69 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 1.01 Total: -42.10 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.13 Total: -17.62 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.29 -6.48 -36.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120856810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.510 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds