Wall clock time and date at job start Tue Mar 31 2020 10:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47107 * 2 1 4 4 H 1.09000 * 109.47274 * 304.99847 * 3 2 1 5 5 C 1.52997 * 109.46771 * 185.00163 * 3 2 1 6 6 C 1.50698 * 109.47311 * 65.00108 * 5 3 2 7 7 O 1.21289 * 120.00172 * 359.97438 * 6 5 3 8 8 N 1.34776 * 119.99709 * 179.97438 * 6 5 3 9 9 C 1.37100 * 119.99960 * 179.97438 * 8 6 5 10 10 H 1.08003 * 120.00153 * 20.20850 * 9 8 6 11 11 C 1.38948 * 120.00464 * 200.21484 * 9 8 6 12 12 N 1.31422 * 119.99740 * 21.43364 * 11 9 8 13 13 Si 1.86798 * 120.00360 * 201.43286 * 11 9 8 14 14 H 1.48495 * 109.47024 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46669 * 119.99976 * 13 11 9 16 16 H 1.48491 * 109.47232 * 239.99700 * 13 11 9 17 17 C 1.46503 * 120.00280 * 359.97438 * 8 6 5 18 18 C 1.47208 * 109.47026 * 83.95413 * 17 8 6 19 19 N 5.38396 * 168.42467 * 129.55799 * 2 1 3 20 20 C 1.50702 * 109.47220 * 64.99925 * 3 2 1 21 21 C 1.38265 * 119.94157 * 59.72784 * 20 3 2 22 22 C 1.38142 * 120.05147 * 179.72566 * 21 20 3 23 23 C 1.38728 * 119.94526 * 0.54791 * 22 21 20 24 24 O 1.35902 * 120.05848 * 179.74852 * 23 22 21 25 25 C 1.42904 * 116.99923 * 359.97438 * 24 23 22 26 26 C 1.38737 * 119.88970 * 359.72321 * 23 22 21 27 27 C 1.38146 * 119.93832 * 0.02562 * 26 23 22 28 28 H 1.09000 * 109.47013 * 299.99920 * 1 2 3 29 29 H 1.09002 * 109.46813 * 60.00155 * 1 2 3 30 30 H 1.08997 * 109.47014 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46813 * 119.99845 * 2 1 3 32 32 H 1.09000 * 109.47013 * 240.00080 * 2 1 3 33 33 H 1.09008 * 109.46949 * 185.00241 * 5 3 2 34 34 H 1.09004 * 109.47436 * 304.99806 * 5 3 2 35 35 H 0.97000 * 119.99831 * 180.02562 * 12 11 9 36 36 H 1.09001 * 109.47385 * 203.95010 * 17 8 6 37 37 H 1.08995 * 109.47162 * 323.95493 * 17 8 6 38 38 H 1.07997 * 119.97454 * 359.97438 * 21 20 3 39 39 H 1.08004 * 120.02668 * 180.27213 * 22 21 20 40 40 H 1.09002 * 109.47273 * 300.00481 * 25 24 23 41 41 H 1.09004 * 109.47074 * 60.00087 * 25 24 23 42 42 H 1.08996 * 109.47114 * 179.97438 * 25 24 23 43 43 H 1.07995 * 120.02797 * 179.97438 * 26 23 22 44 44 H 1.08000 * 119.96600 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1258 6 6 3.9589 0.8821 -1.4673 7 8 3.1043 0.5156 -2.2460 8 7 5.2610 0.7866 -1.8017 9 6 5.6196 0.2746 -3.0219 10 1 4.9032 0.2522 -3.8298 11 6 6.9047 -0.2155 -3.2193 12 7 7.6330 -0.5837 -2.1892 13 14 7.5973 -0.3510 -4.9489 14 1 6.5856 0.1253 -5.9259 15 1 8.8215 0.4826 -5.0585 16 1 7.9358 -1.7678 -5.2369 17 6 6.2933 1.2298 -0.8613 18 6 6.5825 0.1487 0.0951 19 7 6.8045 -0.6880 0.8329 20 6 1.6414 2.1163 1.2877 21 6 2.0729 1.6038 2.4972 22 6 1.7135 2.2229 3.6786 23 6 0.9095 3.3531 3.6515 24 8 0.5503 3.9610 4.8127 25 6 1.0362 3.3819 6.0254 26 6 0.4732 3.8622 2.4369 27 6 0.8397 3.2423 1.2579 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.9356 2.4655 -0.0366 34 1 3.9955 0.8310 0.6659 35 1 8.5302 -0.9255 -2.3269 36 1 7.2008 1.4817 -1.4101 37 1 5.9397 2.1079 -0.3210 38 1 2.6948 0.7210 2.5180 39 1 2.0545 1.8247 4.6229 40 1 0.6763 2.3564 6.1081 41 1 2.1262 3.3849 6.0182 42 1 0.6773 3.9630 6.8748 43 1 -0.1531 4.7416 2.4131 44 1 0.5006 3.6385 0.3121 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120856810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:03 Heat of formation + Delta-G solvation = -38.073048 kcal Electronic energy + Delta-G solvation = -26313.905550 eV Core-core repulsion = 22617.220426 eV Total energy + Delta-G solvation = -3696.685124 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.29506 -40.60467 -38.95801 -37.57912 -36.30193 -35.66225 -33.75468 -31.98114 -31.59813 -30.37607 -29.08607 -28.09977 -26.81591 -24.95952 -23.93261 -22.91385 -21.40629 -20.26934 -19.67313 -19.06553 -18.25384 -17.94845 -17.18601 -16.58814 -16.53019 -16.04498 -15.95022 -15.74262 -15.43517 -15.07452 -14.84875 -14.65166 -14.47816 -14.21371 -14.15084 -13.95799 -13.57046 -13.40700 -13.34804 -13.08271 -12.94641 -12.77620 -12.73188 -12.33028 -12.27346 -12.20513 -12.05968 -11.99979 -11.93403 -11.60556 -11.48320 -11.33958 -11.06033 -10.22218 -9.88095 -9.84588 -8.96566 -8.37213 -5.93385 0.46331 0.51024 1.39484 1.49125 1.61192 1.86129 2.11424 2.27526 2.37848 2.44321 2.84191 3.03424 3.17430 3.61689 3.79968 3.83725 3.99571 4.07051 4.18007 4.28599 4.36667 4.40507 4.42113 4.51058 4.54079 4.60664 4.61528 4.71282 4.75769 4.80881 4.89260 4.91337 5.01353 5.11388 5.18781 5.25955 5.35263 5.43693 5.45377 5.51657 5.60675 5.83714 5.88710 6.10514 6.44824 6.50878 7.03613 7.17989 7.41403 8.00145 8.66905 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019795 B = 0.003283 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.164524 B = 8526.105831 C = 9229.586631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.120 4.120 3 C -0.016 4.016 4 H 0.077 0.923 5 C -0.120 4.120 6 C 0.455 3.545 7 O -0.603 6.603 8 N -0.460 5.460 9 C -0.336 4.336 10 H 0.082 0.918 11 C 0.004 3.996 12 N -0.894 5.894 13 Si 0.983 3.017 14 H -0.270 1.270 15 H -0.265 1.265 16 H -0.291 1.291 17 C 0.222 3.778 18 C 0.258 3.742 19 N -0.508 5.508 20 C -0.105 4.105 21 C -0.082 4.082 22 C -0.206 4.206 23 C 0.109 3.891 24 O -0.335 6.335 25 C 0.019 3.981 26 C -0.156 4.156 27 C -0.076 4.076 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.272 0.728 36 H 0.120 0.880 37 H 0.137 0.863 38 H 0.120 0.880 39 H 0.141 0.859 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.119 0.881 43 H 0.142 0.858 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.795 11.137 12.431 19.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.158 4.158 3 C -0.034 4.034 4 H 0.096 0.904 5 C -0.160 4.160 6 C 0.245 3.755 7 O -0.488 6.488 8 N -0.180 5.180 9 C -0.464 4.464 10 H 0.100 0.900 11 C -0.198 4.198 12 N -0.533 5.533 13 Si 0.808 3.192 14 H -0.195 1.195 15 H -0.189 1.189 16 H -0.218 1.218 17 C 0.096 3.904 18 C -0.060 4.060 19 N -0.189 5.189 20 C -0.106 4.106 21 C -0.100 4.100 22 C -0.225 4.225 23 C 0.064 3.936 24 O -0.249 6.249 25 C -0.075 4.075 26 C -0.174 4.174 27 C -0.094 4.094 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.130 0.870 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.137 0.863 37 H 0.154 0.846 38 H 0.138 0.862 39 H 0.159 0.841 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.137 0.863 43 H 0.159 0.841 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.810 9.821 13.189 19.148 hybrid contribution 0.871 -0.704 -1.130 1.591 sum -8.939 9.117 12.059 17.563 Atomic orbital electron populations 1.21634 0.94723 1.01333 1.01660 1.21635 0.96967 0.96018 1.01146 1.19712 0.92992 0.96027 0.94707 0.90432 1.21699 0.97500 1.03110 0.93686 1.21019 0.82219 0.82482 0.89743 1.90490 1.49840 1.54146 1.54291 1.43832 1.04025 1.55478 1.14705 1.19612 0.97787 1.40251 0.88739 0.90022 1.25867 0.96975 0.94713 1.02244 1.69937 1.11628 1.40214 1.31514 0.85024 0.78406 0.77327 0.78439 1.19478 1.18937 1.21804 1.19002 0.95047 0.89340 0.87044 1.29827 0.91051 0.94200 0.90900 1.80945 1.10857 1.10571 1.16527 1.19685 0.99983 0.96839 0.94045 1.20880 0.98447 0.99053 0.91611 1.21351 1.03435 0.97951 0.99765 1.19187 0.95232 0.92505 0.86644 1.86030 1.71404 1.53866 1.13591 1.23298 1.00143 1.00032 0.84053 1.20596 1.04489 1.02799 0.89526 1.21047 0.96016 0.94091 0.98233 0.92202 0.92950 0.92991 0.92998 0.92961 0.86962 0.90173 0.91805 0.86260 0.84588 0.86200 0.84111 0.92091 0.92062 0.86281 0.84055 0.84001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.73 71.98 0.70 -3.00 16 2 C -0.12 -3.88 5.08 30.60 0.16 -3.73 16 3 C -0.02 -0.46 1.68 -11.54 -0.02 -0.48 16 4 H 0.08 2.42 7.69 -2.39 -0.02 2.40 16 5 C -0.12 -3.83 3.52 29.85 0.11 -3.73 16 6 C 0.45 19.64 7.24 87.66 0.63 20.27 16 7 O -0.60 -30.34 13.66 -3.06 -0.04 -30.39 16 8 N -0.46 -20.79 2.60 -645.41 -1.68 -22.47 16 9 C -0.34 -17.25 9.27 84.04 0.78 -16.47 16 10 H 0.08 4.53 7.43 -2.91 -0.02 4.51 16 11 C 0.00 0.19 4.84 84.92 0.41 0.60 16 12 N -0.89 -44.74 9.58 21.66 0.21 -44.54 16 13 Si 0.98 40.06 29.60 68.60 2.03 42.09 16 14 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 15 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 16 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 17 C 0.22 8.31 4.91 84.58 0.42 8.73 16 18 C 0.26 10.98 12.83 89.43 1.15 12.12 16 19 N -0.51 -23.61 18.55 20.03 0.37 -23.24 16 20 C -0.11 -2.61 3.76 -19.85 -0.07 -2.68 16 21 C -0.08 -1.97 8.70 22.25 0.19 -1.77 16 22 C -0.21 -4.42 9.04 22.36 0.20 -4.22 16 23 C 0.11 2.39 6.69 22.51 0.15 2.54 16 24 O -0.33 -6.73 10.50 -92.45 -0.97 -7.70 16 25 C 0.02 0.24 9.81 113.37 1.11 1.35 16 26 C -0.16 -3.29 9.99 22.37 0.22 -3.06 16 27 C -0.08 -1.66 9.66 22.25 0.22 -1.45 16 28 H 0.06 1.47 7.38 -2.39 -0.02 1.46 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.05 1.62 7.20 -2.39 -0.02 1.60 16 32 H 0.05 2.12 5.88 -2.39 -0.01 2.10 16 33 H 0.11 2.90 7.42 -2.38 -0.02 2.88 16 34 H 0.08 2.57 6.93 -2.38 -0.02 2.55 16 35 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 36 H 0.12 4.59 6.63 -2.39 -0.02 4.58 16 37 H 0.14 3.61 6.69 -2.39 -0.02 3.59 16 38 H 0.12 2.93 7.12 -2.91 -0.02 2.91 16 39 H 0.14 2.43 6.30 -2.91 -0.02 2.41 16 40 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16 41 H 0.06 0.69 7.66 -2.38 -0.02 0.67 16 42 H 0.12 0.91 8.14 -2.39 -0.02 0.90 16 43 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 44 H 0.14 2.66 7.94 -2.91 -0.02 2.64 16 Total: -1.00 -66.30 363.28 7.29 -59.01 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 1.02 Total: 22.21 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 6.35 Total: 5.03 kcal Atomic # 7 Polarization: -89.15 SS G_CDS: -1.10 Total: -90.25 kcal Atomic # 8 Polarization: -37.07 SS G_CDS: -1.01 Total: -38.08 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -66.30 7.29 -59.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120856810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.938 kcal (2) G-P(sol) polarization free energy of solvation -66.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds