Wall clock time and date at job start Tue Mar 31 2020 11:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47079 * 2 1 4 4 N 1.46500 * 109.47236 * 180.02562 * 3 2 1 5 5 C 1.35446 * 124.79392 * 89.97068 * 4 3 2 6 6 C 1.50700 * 125.11798 * 0.06321 * 5 4 3 7 7 C 1.36484 * 109.75985 * 180.02562 * 5 4 3 8 8 C 1.46807 * 126.76544 * 180.02562 * 7 5 4 9 9 O 1.21703 * 120.00058 * 90.00235 * 8 7 5 10 10 N 1.34777 * 119.99862 * 269.73043 * 8 7 5 11 11 C 1.36967 * 120.00063 * 180.27390 * 10 8 7 12 12 H 1.07991 * 119.99698 * 0.02562 * 11 10 8 13 13 C 1.38961 * 119.99654 * 179.97438 * 11 10 8 14 14 N 1.31424 * 120.00513 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99560 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47187 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47428 * 120.00138 * 15 13 11 18 18 H 1.48498 * 109.47018 * 240.00010 * 15 13 11 19 19 C 1.47464 * 106.47208 * 0.26608 * 7 5 4 20 20 C 1.39275 * 133.93712 * 179.73214 * 19 7 5 21 21 C 1.38211 * 119.62326 * 180.02562 * 20 19 7 22 22 O 1.35972 * 119.90777 * 180.02562 * 21 20 19 23 23 C 1.42906 * 117.00032 * 180.02562 * 22 21 20 24 24 C 1.39185 * 120.18266 * 0.02562 * 21 20 19 25 25 C 1.37722 * 120.57831 * 359.58421 * 24 21 20 26 26 C 1.38134 * 124.78967 * 269.99814 * 4 3 2 27 27 H 1.09002 * 109.46991 * 59.99829 * 1 2 3 28 28 H 1.08996 * 109.46929 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47128 * 299.99867 * 1 2 3 30 30 H 1.08995 * 109.47128 * 240.00133 * 2 1 3 31 31 H 1.08996 * 109.47302 * 119.99835 * 2 1 3 32 32 H 1.09004 * 109.47517 * 59.99783 * 3 2 1 33 33 H 1.09002 * 109.47349 * 299.99952 * 3 2 1 34 34 H 1.08994 * 109.46802 * 269.97797 * 6 5 4 35 35 H 1.09003 * 109.47309 * 29.98338 * 6 5 4 36 36 H 1.09004 * 109.47116 * 149.98033 * 6 5 4 37 37 H 0.97000 * 119.99736 * 0.26915 * 10 8 7 38 38 H 0.97000 * 119.99530 * 179.97438 * 14 13 11 39 39 H 1.07993 * 120.18959 * 359.97438 * 20 19 7 40 40 H 1.08997 * 109.47188 * 180.02562 * 23 22 21 41 41 H 1.08997 * 109.47154 * 300.00238 * 23 22 21 42 42 H 1.08995 * 109.46874 * 60.00524 * 23 22 21 43 43 H 1.08000 * 119.70597 * 179.97438 * 24 21 20 44 44 H 1.08008 * 119.99537 * 179.90217 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2775 1.4421 -1.1132 6 6 3.7593 1.4430 -2.5283 7 6 5.5957 1.4417 -0.7598 8 6 6.7490 1.4418 -1.6681 9 8 7.2273 2.4958 -2.0443 10 7 7.2815 0.2746 -2.0811 11 6 8.3610 0.2746 -2.9242 12 1 8.7857 1.2099 -3.2575 13 6 8.9103 -0.9289 -3.3495 14 7 8.3944 -2.0671 -2.9426 15 14 10.3831 -0.9289 -4.4987 16 1 10.7711 0.4712 -4.8061 17 1 11.5202 -1.6263 -3.8462 18 1 10.0283 -1.6315 -5.7579 19 6 5.6334 1.4353 0.7144 20 6 6.6606 1.4274 1.6548 21 6 6.3532 1.4223 3.0023 22 8 7.3515 1.4151 3.9254 23 6 6.9634 1.4095 5.3008 24 6 5.0245 1.4245 3.4169 25 6 4.0026 1.4404 2.4939 26 6 4.2937 1.4424 1.1335 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.6338 0.4156 -2.8699 35 1 2.7989 1.9574 -2.5633 36 1 4.4703 1.9567 -3.1754 37 1 6.9003 -0.5654 -1.7813 38 1 8.7778 -2.9071 -3.2399 39 1 7.6915 1.4244 1.3330 40 1 7.8537 1.4045 5.9295 41 1 6.3726 2.3001 5.5152 42 1 6.3678 0.5202 5.5066 43 1 4.7931 1.4201 4.4718 44 1 2.9748 1.4404 2.8261 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126818709.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:04 Heat of formation + Delta-G solvation = -24.538445 kcal Electronic energy + Delta-G solvation = -26390.911800 eV Core-core repulsion = 22694.813581 eV Total energy + Delta-G solvation = -3696.098219 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.28838 -39.19978 -37.70349 -36.15741 -34.65164 -33.77995 -31.84020 -30.98844 -30.67782 -29.66193 -27.12422 -26.63043 -26.20734 -24.55236 -22.35059 -21.74013 -21.52922 -20.15650 -18.64996 -17.88900 -17.54138 -16.86380 -15.96080 -15.60281 -15.43585 -15.19557 -15.06096 -14.85142 -14.40546 -13.87363 -13.64372 -13.46790 -13.39748 -12.96379 -12.90092 -12.66362 -12.61118 -12.25824 -12.22457 -12.11201 -11.96386 -11.84778 -11.49539 -11.38474 -11.32924 -11.02543 -10.99293 -10.46952 -10.29216 -10.20369 -10.13481 -9.43996 -9.22332 -8.40119 -7.87910 -7.60572 -7.07810 -6.34655 -3.74498 1.29829 1.86458 2.83127 2.91309 3.21150 3.31789 3.39711 3.48811 3.94724 4.10653 4.26030 4.53262 4.63735 4.74612 4.91784 4.98701 5.01164 5.05430 5.13206 5.17416 5.23468 5.29759 5.33803 5.38446 5.43750 5.46466 5.59266 5.67185 5.73205 5.76333 5.79647 5.92880 5.98629 6.05530 6.16913 6.29685 6.45033 6.57807 6.60945 6.87246 7.09678 7.37784 7.54392 7.62224 7.69328 8.15958 8.70750 9.25104 9.65588 10.18386 10.82900 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.009665 B = 0.004639 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.455455 B = 6034.470466 C = 8069.581901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C 0.110 3.890 4 N -0.475 5.475 5 C 0.116 3.884 6 C -0.094 4.094 7 C -0.184 4.184 8 C 0.513 3.487 9 O -0.593 6.593 10 N -0.549 5.549 11 C -0.299 4.299 12 H 0.104 0.896 13 C 0.023 3.977 14 N -0.898 5.898 15 Si 0.928 3.072 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.036 4.036 20 C -0.099 4.099 21 C 0.095 3.905 22 O -0.318 6.318 23 C 0.031 3.969 24 C -0.185 4.185 25 C -0.092 4.092 26 C 0.066 3.934 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.394 0.606 38 H 0.270 0.730 39 H 0.132 0.868 40 H 0.094 0.906 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.127 0.873 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.665 2.677 11.856 19.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.182 4.182 3 C -0.012 4.012 4 N -0.159 5.159 5 C 0.007 3.993 6 C -0.151 4.151 7 C -0.195 4.195 8 C 0.298 3.702 9 O -0.478 6.478 10 N -0.183 5.183 11 C -0.429 4.429 12 H 0.122 0.878 13 C -0.178 4.178 14 N -0.539 5.539 15 Si 0.755 3.245 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.041 4.041 20 C -0.118 4.118 21 C 0.049 3.951 22 O -0.232 6.232 23 C -0.064 4.064 24 C -0.204 4.204 25 C -0.112 4.112 26 C -0.038 4.038 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.228 0.772 38 H 0.080 0.920 39 H 0.150 0.850 40 H 0.113 0.887 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.145 0.855 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.396 3.181 11.502 19.479 hybrid contribution 0.239 -0.664 -0.033 0.707 sum -15.157 2.517 11.469 19.173 Atomic orbital electron populations 1.21693 0.94727 1.02273 1.01921 1.21951 0.96262 0.96313 1.03663 1.21789 0.77546 0.98005 1.03867 1.43447 1.05119 1.63602 1.03686 1.20315 0.89240 1.01148 0.88613 1.20524 1.01424 1.03397 0.89744 1.20117 0.92844 1.14984 0.91507 1.16797 0.84559 0.84653 0.84187 1.90631 1.64304 1.31542 1.61356 1.41886 1.28085 1.06649 1.41708 1.19782 1.06340 0.94463 1.22270 0.87775 1.25272 0.99322 0.94666 0.98572 1.69648 1.41746 0.97523 1.45008 0.85821 0.80668 0.78588 0.79396 1.19156 1.20754 1.20810 1.18596 0.91253 1.02195 0.92049 1.19653 0.99652 1.03922 0.88604 1.18538 0.86648 1.01003 0.88878 1.86094 1.32260 1.89649 1.15226 1.22951 1.02016 1.00835 0.80646 1.20757 0.91431 1.08985 0.99253 1.19638 0.98658 1.04120 0.88824 1.18047 0.89880 1.07947 0.87913 0.92421 0.92130 0.92591 0.90926 0.91209 0.89794 0.89397 0.90097 0.91595 0.89077 0.77250 0.91961 0.84964 0.88711 0.93108 0.93048 0.85534 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.14 -1.33 6.26 -26.73 -0.17 -1.50 16 3 C 0.11 1.12 5.73 -4.04 -0.02 1.09 16 4 N -0.47 -7.09 2.75 -109.58 -0.30 -7.39 16 5 C 0.12 2.05 6.86 -81.63 -0.56 1.49 16 6 C -0.09 -1.37 9.82 36.01 0.35 -1.02 16 7 C -0.18 -4.00 6.02 -103.31 -0.62 -4.62 16 8 C 0.51 13.32 7.11 -12.80 -0.09 13.23 16 9 O -0.59 -17.46 16.68 5.19 0.09 -17.38 16 10 N -0.55 -14.79 5.28 -12.13 -0.06 -14.85 16 11 C -0.30 -8.57 9.68 -14.99 -0.15 -8.71 16 12 H 0.10 3.11 7.15 -52.49 -0.38 2.74 16 13 C 0.02 0.64 5.50 -17.46 -0.10 0.55 16 14 N -0.90 -25.03 13.05 55.50 0.72 -24.30 16 15 Si 0.93 21.39 29.55 -169.99 -5.02 16.36 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 C -0.04 -0.72 6.36 -104.95 -0.67 -1.38 16 20 C -0.10 -1.95 10.03 -39.21 -0.39 -2.34 16 21 C 0.09 1.57 6.68 -39.24 -0.26 1.31 16 22 O -0.32 -4.92 10.49 -19.65 -0.21 -5.12 16 23 C 0.03 0.31 9.81 101.05 0.99 1.30 16 24 C -0.18 -2.53 9.01 -39.42 -0.36 -2.89 16 25 C -0.09 -1.26 9.91 -39.44 -0.39 -1.65 16 26 C 0.07 1.09 6.79 -83.89 -0.57 0.52 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.73 8.03 -51.93 -0.42 0.31 16 33 H 0.09 0.77 6.82 -51.93 -0.35 0.42 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 0.74 6.86 -51.93 -0.36 0.38 16 36 H 0.09 1.53 7.85 -51.93 -0.41 1.12 16 37 H 0.39 10.44 7.88 -40.82 -0.32 10.12 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.13 2.78 8.06 -52.49 -0.42 2.36 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.44 7.65 -51.93 -0.40 0.04 16 42 H 0.05 0.45 7.65 -51.93 -0.40 0.05 16 43 H 0.13 1.32 6.26 -52.49 -0.33 0.99 16 44 H 0.12 1.23 8.01 -52.48 -0.42 0.81 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -34.42 372.12 -8.10 -42.52 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -6.29 Total: 9.83 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -2.63 Total: -5.27 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.36 Total: -46.55 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.12 Total: -22.50 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.42 -8.10 -42.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126818709.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.978 kcal (2) G-P(sol) polarization free energy of solvation -34.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds