Wall clock time and date at job start Tue Mar 31 2020 11:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47079 * 2 1 4 4 N 1.46500 * 109.47236 * 180.02562 * 3 2 1 5 5 C 1.35446 * 124.79392 * 89.97068 * 4 3 2 6 6 C 1.50700 * 125.11798 * 0.06321 * 5 4 3 7 7 C 1.36484 * 109.75985 * 180.02562 * 5 4 3 8 8 C 1.46807 * 126.76544 * 180.02562 * 7 5 4 9 9 O 1.21703 * 120.00058 * 90.00235 * 8 7 5 10 10 N 1.34777 * 119.99862 * 269.73043 * 8 7 5 11 11 C 1.36967 * 120.00063 * 180.27390 * 10 8 7 12 12 H 1.07991 * 119.99698 * 0.02562 * 11 10 8 13 13 C 1.38961 * 119.99654 * 179.97438 * 11 10 8 14 14 N 1.31424 * 120.00513 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99560 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47187 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47428 * 120.00138 * 15 13 11 18 18 H 1.48498 * 109.47018 * 240.00010 * 15 13 11 19 19 C 1.47464 * 106.47208 * 0.26608 * 7 5 4 20 20 C 1.39275 * 133.93712 * 179.73214 * 19 7 5 21 21 C 1.38211 * 119.62326 * 180.02562 * 20 19 7 22 22 O 1.35972 * 119.90777 * 180.02562 * 21 20 19 23 23 C 1.42906 * 117.00032 * 180.02562 * 22 21 20 24 24 C 1.39185 * 120.18266 * 0.02562 * 21 20 19 25 25 C 1.37722 * 120.57831 * 359.58421 * 24 21 20 26 26 C 1.38134 * 124.78967 * 269.99814 * 4 3 2 27 27 H 1.09002 * 109.46991 * 59.99829 * 1 2 3 28 28 H 1.08996 * 109.46929 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47128 * 299.99867 * 1 2 3 30 30 H 1.08995 * 109.47128 * 240.00133 * 2 1 3 31 31 H 1.08996 * 109.47302 * 119.99835 * 2 1 3 32 32 H 1.09004 * 109.47517 * 59.99783 * 3 2 1 33 33 H 1.09002 * 109.47349 * 299.99952 * 3 2 1 34 34 H 1.08994 * 109.46802 * 269.97797 * 6 5 4 35 35 H 1.09003 * 109.47309 * 29.98338 * 6 5 4 36 36 H 1.09004 * 109.47116 * 149.98033 * 6 5 4 37 37 H 0.97000 * 119.99736 * 0.26915 * 10 8 7 38 38 H 0.97000 * 119.99530 * 179.97438 * 14 13 11 39 39 H 1.07993 * 120.18959 * 359.97438 * 20 19 7 40 40 H 1.08997 * 109.47188 * 180.02562 * 23 22 21 41 41 H 1.08997 * 109.47154 * 300.00238 * 23 22 21 42 42 H 1.08995 * 109.46874 * 60.00524 * 23 22 21 43 43 H 1.08000 * 119.70597 * 179.97438 * 24 21 20 44 44 H 1.08008 * 119.99537 * 179.90217 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2775 1.4421 -1.1132 6 6 3.7593 1.4430 -2.5283 7 6 5.5957 1.4417 -0.7598 8 6 6.7490 1.4418 -1.6681 9 8 7.2273 2.4958 -2.0443 10 7 7.2815 0.2746 -2.0811 11 6 8.3610 0.2746 -2.9242 12 1 8.7857 1.2099 -3.2575 13 6 8.9103 -0.9289 -3.3495 14 7 8.3944 -2.0671 -2.9426 15 14 10.3831 -0.9289 -4.4987 16 1 10.7711 0.4712 -4.8061 17 1 11.5202 -1.6263 -3.8462 18 1 10.0283 -1.6315 -5.7579 19 6 5.6334 1.4353 0.7144 20 6 6.6606 1.4274 1.6548 21 6 6.3532 1.4223 3.0023 22 8 7.3515 1.4151 3.9254 23 6 6.9634 1.4095 5.3008 24 6 5.0245 1.4245 3.4169 25 6 4.0026 1.4404 2.4939 26 6 4.2937 1.4424 1.1335 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.6338 0.4156 -2.8699 35 1 2.7989 1.9574 -2.5633 36 1 4.4703 1.9567 -3.1754 37 1 6.9003 -0.5654 -1.7813 38 1 8.7778 -2.9071 -3.2399 39 1 7.6915 1.4244 1.3330 40 1 7.8537 1.4045 5.9295 41 1 6.3726 2.3001 5.5152 42 1 6.3678 0.5202 5.5066 43 1 4.7931 1.4201 4.4718 44 1 2.9748 1.4404 2.8261 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126818709.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:03 Heat of formation + Delta-G solvation = -47.017563 kcal Electronic energy + Delta-G solvation = -26391.886568 eV Core-core repulsion = 22694.813581 eV Total energy + Delta-G solvation = -3697.072987 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.57163 -40.38748 -39.72037 -37.26391 -35.99963 -35.57060 -33.36327 -32.80004 -31.90464 -30.77970 -28.08333 -27.99858 -27.47792 -26.21875 -23.48709 -23.12015 -22.56969 -21.46509 -20.35502 -19.81364 -18.82765 -18.27653 -17.30676 -16.97614 -16.60875 -16.44714 -16.33259 -16.08845 -15.81914 -15.73297 -15.20776 -14.68439 -14.52382 -14.26981 -14.20781 -13.96011 -13.77713 -13.57420 -13.56013 -13.14871 -13.05628 -12.95947 -12.90262 -12.66968 -12.46206 -12.43697 -12.14692 -12.10298 -11.69505 -11.65343 -11.54203 -11.26185 -10.63039 -10.43364 -10.05546 -8.88068 -8.50398 -8.40238 -5.98826 0.02125 0.60445 1.34407 1.38998 1.44413 1.56418 1.73438 1.96937 2.30441 2.44499 2.81781 3.17016 3.36267 3.59659 3.70094 3.80711 3.94772 3.99528 4.16104 4.24903 4.33025 4.37899 4.40768 4.47361 4.48115 4.56088 4.61859 4.64345 4.70564 4.75884 4.79796 4.86997 4.96128 5.04379 5.19129 5.20616 5.27091 5.31698 5.38341 5.43363 5.59888 5.65950 5.98583 6.09063 6.36892 6.55360 6.56243 7.07547 7.51823 8.08113 8.69045 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.009665 B = 0.004639 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.455455 B = 6034.470466 C = 8069.581901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.139 4.139 3 C 0.100 3.900 4 N -0.459 5.459 5 C 0.140 3.860 6 C -0.092 4.092 7 C -0.254 4.254 8 C 0.518 3.482 9 O -0.641 6.641 10 N -0.555 5.555 11 C -0.338 4.338 12 H 0.080 0.920 13 C -0.011 4.011 14 N -0.919 5.919 15 Si 0.998 3.002 16 H -0.272 1.272 17 H -0.270 1.270 18 H -0.264 1.264 19 C -0.064 4.064 20 C -0.155 4.155 21 C 0.105 3.895 22 O -0.347 6.347 23 C 0.018 3.982 24 C -0.177 4.177 25 C -0.067 4.067 26 C 0.057 3.943 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.062 0.938 37 H 0.393 0.607 38 H 0.279 0.721 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.173 0.827 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.260 2.237 13.898 23.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C -0.019 4.019 4 N -0.141 5.141 5 C 0.027 3.973 6 C -0.149 4.149 7 C -0.265 4.265 8 C 0.306 3.694 9 O -0.530 6.530 10 N -0.188 5.188 11 C -0.468 4.468 12 H 0.098 0.902 13 C -0.211 4.211 14 N -0.559 5.559 15 Si 0.821 3.179 16 H -0.197 1.197 17 H -0.196 1.196 18 H -0.189 1.189 19 C -0.069 4.069 20 C -0.175 4.175 21 C 0.059 3.941 22 O -0.261 6.261 23 C -0.076 4.076 24 C -0.197 4.197 25 C -0.087 4.087 26 C -0.047 4.047 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.110 0.890 35 H 0.129 0.871 36 H 0.081 0.919 37 H 0.226 0.774 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.131 0.869 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.190 0.810 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -19.040 2.713 13.589 23.549 hybrid contribution 1.297 -0.537 -0.510 1.493 sum -17.743 2.176 13.079 22.150 Atomic orbital electron populations 1.21658 0.92464 1.02767 1.03129 1.21902 0.98041 0.95243 1.02548 1.22295 0.74023 0.99246 1.06372 1.43703 1.06893 1.61355 1.02182 1.20533 0.88287 0.97952 0.90534 1.20605 1.02626 1.04291 0.87391 1.19820 0.93040 1.21442 0.92155 1.17459 0.85051 0.83441 0.83445 1.90552 1.66254 1.32996 1.63208 1.41936 1.28054 1.06959 1.41870 1.19777 1.08162 0.94361 1.24451 0.90191 1.26147 1.01729 0.93696 0.99480 1.69720 1.42739 0.98086 1.45370 0.84814 0.77008 0.78427 0.77701 1.19660 1.19554 1.18919 1.18733 0.93498 1.03522 0.91187 1.19540 0.97875 1.09099 0.90945 1.18641 0.88399 0.99199 0.87824 1.86070 1.33165 1.89296 1.17589 1.23366 1.03838 1.02636 0.77740 1.21214 0.89572 1.07277 1.01594 1.20199 1.01041 1.00496 0.86993 1.18296 0.88364 1.08520 0.89561 0.91522 0.92068 0.91086 0.92542 0.92028 0.86907 0.87380 0.89025 0.87105 0.91941 0.77370 0.91134 0.89326 0.86876 0.91078 0.91187 0.81006 0.81415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.91 71.98 0.71 -0.62 16 2 C -0.14 -2.08 6.26 30.60 0.19 -1.89 16 3 C 0.10 1.61 5.73 86.38 0.49 2.10 16 4 N -0.46 -12.88 2.75 -500.60 -1.37 -14.26 16 5 C 0.14 5.02 6.86 41.59 0.29 5.30 16 6 C -0.09 -2.68 9.82 71.24 0.70 -1.98 16 7 C -0.25 -11.88 6.02 -19.01 -0.11 -12.00 16 8 C 0.52 29.60 7.11 86.48 0.61 30.22 16 9 O -0.64 -41.52 16.68 -4.36 -0.07 -41.59 16 10 N -0.55 -32.55 5.28 -310.50 -1.64 -34.18 16 11 C -0.34 -20.82 9.68 84.06 0.81 -20.01 16 12 H 0.08 5.21 7.15 -2.91 -0.02 5.19 16 13 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 14 N -0.92 -52.64 13.05 21.67 0.28 -52.35 16 15 Si 1.00 45.02 29.55 68.60 2.03 47.05 16 16 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 19 C -0.06 -2.75 6.36 -20.08 -0.13 -2.88 16 20 C -0.15 -6.68 10.03 22.51 0.23 -6.45 16 21 C 0.10 3.52 6.68 22.49 0.15 3.67 16 22 O -0.35 -10.74 10.49 -93.24 -0.98 -11.72 16 23 C 0.02 0.31 9.81 113.37 1.11 1.43 16 24 C -0.18 -4.27 9.01 22.38 0.20 -4.07 16 25 C -0.07 -1.58 9.91 22.36 0.22 -1.36 16 26 C 0.06 1.80 6.79 38.88 0.26 2.07 16 27 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.11 1.26 8.03 -2.38 -0.02 1.24 16 33 H 0.11 1.36 6.82 -2.39 -0.02 1.35 16 34 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.11 2.17 6.86 -2.39 -0.02 2.16 16 36 H 0.06 2.20 7.85 -2.38 -0.02 2.19 16 37 H 0.39 22.63 7.88 -92.71 -0.73 21.90 16 38 H 0.28 14.76 8.31 -92.71 -0.77 13.99 16 39 H 0.09 4.37 8.06 -2.91 -0.02 4.35 16 40 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.07 0.96 7.65 -2.39 -0.02 0.94 16 42 H 0.07 0.96 7.65 -2.39 -0.02 0.95 16 43 H 0.17 2.57 6.26 -2.91 -0.02 2.55 16 44 H 0.17 2.31 8.01 -2.91 -0.02 2.28 16 Total: -1.00 -84.92 372.12 4.75 -80.17 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: 0.29 Total: 33.50 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 6.21 Total: -6.60 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -2.73 Total: -100.79 kcal Atomic # 8 Polarization: -52.27 SS G_CDS: -1.05 Total: -53.32 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -84.92 4.75 -80.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126818709.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.152 kcal (2) G-P(sol) polarization free energy of solvation -84.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds