Wall clock time and date at job start Tue Mar 31 2020 11:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47265 * 2 1 4 4 H 1.09001 * 109.47355 * 57.83638 * 3 2 1 5 5 C 1.50701 * 109.46917 * 177.83472 * 3 2 1 6 6 H 1.07994 * 119.99966 * 94.07830 * 5 3 2 7 7 C 1.37881 * 119.99869 * 274.07717 * 5 3 2 8 8 N 1.31513 * 119.99983 * 184.47050 * 7 5 3 9 9 Si 1.86796 * 120.00163 * 4.47089 * 7 5 3 10 10 H 1.48502 * 109.47400 * 264.99028 * 9 7 5 11 11 H 1.48502 * 109.47035 * 24.98748 * 9 7 5 12 12 H 1.48496 * 109.47140 * 144.98869 * 9 7 5 13 13 N 1.46501 * 109.47273 * 297.83090 * 3 2 1 14 14 C 1.34778 * 119.99676 * 84.99974 * 13 3 2 15 15 O 1.21358 * 119.99932 * 0.02562 * 14 13 3 16 16 C 1.49350 * 119.99790 * 180.02562 * 14 13 3 17 17 O 1.21368 * 120.00357 * 359.97438 * 16 14 13 18 18 N 1.34778 * 119.99790 * 180.02562 * 16 14 13 19 19 C 1.46537 * 124.96137 * 6.45105 * 18 16 14 20 20 C 1.53752 * 105.19148 * 179.97438 * 19 18 16 21 21 C 1.51222 * 104.54757 * 359.97438 * 20 19 18 22 22 C 1.38161 * 130.98592 * 179.97438 * 21 20 19 23 23 C 1.38251 * 120.14964 * 179.27293 * 22 21 20 24 24 C 1.38309 * 119.83233 * 0.70406 * 23 22 21 25 25 C 1.37822 * 120.23295 * 359.53539 * 24 23 22 26 26 C 1.50698 * 119.86165 * 180.02562 * 25 24 23 27 27 C 1.38615 * 108.54080 * 359.77336 * 21 20 19 28 28 H 1.09004 * 109.47550 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47175 * 300.00525 * 1 2 3 30 30 H 1.09000 * 109.46705 * 60.00162 * 1 2 3 31 31 H 1.09000 * 109.47175 * 239.99475 * 2 1 3 32 32 H 1.09000 * 109.46705 * 119.99838 * 2 1 3 33 33 H 0.96994 * 120.00232 * 179.97438 * 8 7 5 34 34 H 0.96992 * 119.99957 * 265.00551 * 13 3 2 35 35 H 1.09001 * 110.29532 * 298.88659 * 19 18 16 36 36 H 1.08994 * 110.30085 * 61.03431 * 19 18 16 37 37 H 1.08995 * 110.42471 * 118.76361 * 20 19 18 38 38 H 1.09007 * 110.41493 * 241.22971 * 20 19 18 39 39 H 1.08001 * 119.92931 * 0.02562 * 22 21 20 40 40 H 1.07995 * 120.08227 * 180.25891 * 23 22 21 41 41 H 1.08004 * 119.88406 * 179.56335 * 24 23 22 42 42 H 1.09000 * 109.47232 * 241.56817 * 26 25 24 43 43 H 1.09004 * 109.47467 * 1.56926 * 26 25 24 44 44 H 1.09001 * 109.47533 * 121.57019 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6454 1.9674 0.8699 5 6 3.5461 1.4427 0.0537 6 1 4.1189 1.4975 -0.8601 7 6 4.1926 1.3729 1.2695 8 7 5.5036 1.4616 1.3232 9 14 3.2063 1.1523 2.8405 10 1 2.9492 2.4800 3.4542 11 1 1.9130 0.4943 2.5247 12 1 3.9725 0.3075 3.7914 13 7 1.5949 2.1178 -1.2214 14 6 0.3737 2.6861 -1.2704 15 8 -0.3568 2.6387 -0.3025 16 6 -0.0803 3.3742 -2.5157 17 8 0.6505 3.4220 -3.4836 18 7 -1.3012 3.9429 -2.5645 19 6 -2.2148 4.0691 -1.4257 20 6 -3.4591 4.7791 -1.9842 21 6 -3.1422 5.0079 -3.4450 22 6 -3.8812 5.6012 -4.4504 23 6 -3.3591 5.7064 -5.7262 24 6 -2.0999 5.2030 -5.9981 25 6 -1.3609 4.6059 -4.9997 26 6 0.0105 4.0608 -5.3051 27 6 -1.8776 4.5039 -3.7059 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.9584 1.4129 2.1785 34 1 2.1789 2.1559 -1.9949 35 1 -2.4815 3.0836 -1.0439 36 1 -1.7579 4.6695 -0.6391 37 1 -4.3383 4.1434 -1.8805 38 1 -3.6144 5.7305 -1.4754 39 1 -4.8640 5.9945 -4.2364 40 1 -3.9360 6.1741 -6.5103 41 1 -1.6942 5.2785 -6.9962 42 1 0.0235 2.9864 -5.1218 43 1 0.2540 4.2541 -6.3498 44 1 0.7460 4.5475 -4.6646 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128066826.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:09 Heat of formation + Delta-G solvation = 2.244529 kcal Electronic energy + Delta-G solvation = -27027.022177 eV Core-core repulsion = 23332.085354 eV Total energy + Delta-G solvation = -3694.936822 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.53509 -39.59888 -38.15702 -36.85415 -35.38716 -33.20680 -32.41463 -31.54747 -31.11869 -29.31517 -27.82211 -26.80754 -25.31304 -23.16982 -22.81490 -21.75071 -21.36100 -19.84078 -19.41162 -18.13568 -17.48405 -16.65366 -16.49019 -15.86288 -15.68685 -15.32821 -15.03880 -14.60933 -14.39131 -14.22103 -13.69601 -13.33264 -13.18595 -13.13822 -12.90407 -12.70020 -12.40306 -12.19167 -12.10959 -11.99268 -11.91561 -11.78776 -11.56196 -11.07312 -10.98359 -10.89139 -10.80982 -10.32737 -10.24647 -10.07194 -9.72390 -9.31273 -8.85460 -8.76016 -8.60014 -8.25578 -7.72745 -6.29040 -4.33114 0.96188 1.23225 1.91586 2.42592 3.19394 3.29273 3.33878 3.44454 3.68677 3.75811 4.25797 4.39520 4.43402 4.80830 4.83103 4.90071 5.00930 5.08715 5.11962 5.24995 5.34115 5.59874 5.70236 5.76640 5.80491 5.87139 5.92844 5.96102 6.02058 6.10720 6.12583 6.23590 6.33944 6.48609 6.51265 6.64239 6.64848 6.77479 6.83765 6.85756 7.07796 7.15705 7.20964 7.35983 7.72871 8.06130 8.38198 8.55031 8.73840 9.30653 10.82542 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.023618 B = 0.003553 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.234203 B = 7877.898215 C = 8464.782866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.241 3.759 4 H 0.053 0.947 5 C -0.537 4.537 6 H 0.081 0.919 7 C 0.083 3.917 8 N -0.885 5.885 9 Si 0.867 3.133 10 H -0.275 1.275 11 H -0.250 1.250 12 H -0.283 1.283 13 N -0.661 5.661 14 C 0.494 3.506 15 O -0.531 6.531 16 C 0.502 3.498 17 O -0.485 6.485 18 N -0.534 5.534 19 C 0.113 3.887 20 C -0.090 4.090 21 C -0.131 4.131 22 C -0.089 4.089 23 C -0.138 4.138 24 C -0.100 4.100 25 C -0.090 4.090 26 C -0.095 4.095 27 C 0.142 3.858 28 H 0.033 0.967 29 H 0.054 0.946 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.268 0.732 34 H 0.406 0.594 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.074 0.926 43 H 0.033 0.967 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.306 6.551 -10.023 21.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 C 0.138 3.862 4 H 0.070 0.930 5 C -0.574 4.574 6 H 0.099 0.901 7 C -0.122 4.122 8 N -0.521 5.521 9 Si 0.693 3.307 10 H -0.201 1.201 11 H -0.174 1.174 12 H -0.209 1.209 13 N -0.310 5.310 14 C 0.273 3.727 15 O -0.410 6.410 16 C 0.290 3.710 17 O -0.360 6.360 18 N -0.258 5.258 19 C -0.009 4.009 20 C -0.127 4.127 21 C -0.134 4.134 22 C -0.108 4.108 23 C -0.157 4.157 24 C -0.118 4.118 25 C -0.093 4.093 26 C -0.151 4.151 27 C 0.048 3.952 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.241 0.759 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.093 0.907 43 H 0.052 0.948 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -18.070 6.415 -9.597 21.442 hybrid contribution -0.097 -0.099 0.547 0.564 sum -18.166 6.316 -9.050 21.256 Atomic orbital electron populations 1.21899 0.97453 0.99163 1.01644 1.22224 0.93734 0.99326 1.01821 1.19258 0.95323 0.88702 0.82868 0.92955 1.20974 0.87960 1.53161 0.95335 0.90070 1.24869 0.94833 0.93616 0.98904 1.69882 1.07772 1.48064 1.26393 0.87038 0.81342 0.79099 0.83198 1.20094 1.17386 1.20932 1.46344 1.13902 1.52005 1.18782 1.19749 0.84119 0.81360 0.87446 1.90704 1.53957 1.59860 1.36463 1.20975 0.81657 0.78681 0.89721 1.91205 1.54324 1.56880 1.33621 1.45536 1.16066 1.54329 1.09890 1.22279 0.88043 1.02933 0.87633 1.21235 0.98373 1.01664 0.91464 1.20044 0.94345 1.02963 0.96059 1.20317 0.99347 0.99217 0.91879 1.20997 0.96178 1.02014 0.96541 1.20806 0.94418 0.98218 0.98393 1.19688 0.98262 1.00795 0.90544 1.21476 0.92515 1.02091 0.98980 1.18337 0.92814 0.96434 0.87649 0.94806 0.92710 0.93850 0.92582 0.91482 0.92155 0.75861 0.88518 0.89278 0.89147 0.89166 0.85861 0.85743 0.85568 0.90741 0.94781 0.87936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 8.46 37.16 0.31 -2.38 16 2 C -0.13 -2.74 5.15 -26.73 -0.14 -2.88 16 3 C 0.24 5.44 1.82 -69.08 -0.13 5.32 16 4 H 0.05 1.27 5.61 -51.93 -0.29 0.98 16 5 C -0.54 -14.06 9.07 -34.44 -0.31 -14.38 16 6 H 0.08 2.28 8.02 -52.49 -0.42 1.85 16 7 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 8 N -0.89 -25.66 13.96 55.43 0.77 -24.88 16 9 Si 0.87 20.38 26.18 -169.99 -4.45 15.93 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.25 -5.58 5.51 56.52 0.31 -5.26 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.66 -13.22 4.98 -55.40 -0.28 -13.49 16 14 C 0.49 9.20 6.29 -11.63 -0.07 9.13 16 15 O -0.53 -10.30 11.22 5.49 0.06 -10.24 16 16 C 0.50 8.45 7.84 -11.63 -0.09 8.36 16 17 O -0.49 -8.32 9.51 5.48 0.05 -8.26 16 18 N -0.53 -7.94 3.12 -113.43 -0.35 -8.29 16 19 C 0.11 1.40 5.70 -3.63 -0.02 1.38 16 20 C -0.09 -0.86 6.94 -27.24 -0.19 -1.05 16 21 C -0.13 -1.51 6.23 -104.26 -0.65 -2.16 16 22 C -0.09 -0.87 10.04 -39.60 -0.40 -1.27 16 23 C -0.14 -1.32 10.06 -39.55 -0.40 -1.72 16 24 C -0.10 -1.10 9.64 -39.71 -0.38 -1.48 16 25 C -0.09 -1.22 5.91 -104.23 -0.62 -1.84 16 26 C -0.10 -1.33 7.82 36.00 0.28 -1.05 16 27 C 0.14 1.99 6.60 -83.62 -0.55 1.44 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 1.06 7.67 -51.93 -0.40 0.66 16 30 H 0.04 0.80 5.72 -51.93 -0.30 0.50 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.43 5.95 -51.93 -0.31 1.12 16 33 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 34 H 0.41 7.77 8.04 -40.82 -0.33 7.44 16 35 H 0.10 1.23 7.31 -51.93 -0.38 0.85 16 36 H 0.09 1.12 7.93 -51.93 -0.41 0.71 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.13 1.12 7.93 -52.48 -0.42 0.71 16 42 H 0.07 1.14 6.59 -51.87 -0.34 0.80 16 43 H 0.03 0.41 7.86 -51.93 -0.41 0.00 16 44 H 0.10 1.62 5.81 -55.69 -0.32 1.29 16 LS Contribution 343.15 15.07 5.17 5.17 Total: -1.00 -29.36 343.15 -8.56 -37.92 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -6.09 Total: 8.58 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -3.45 Total: -2.42 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.14 Total: -46.67 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.11 Total: -18.50 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.45 Total: 15.93 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.36 -8.56 -37.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128066826.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.160 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds