Wall clock time and date at job start Tue Mar 31 2020 11:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47265 * 2 1 4 4 H 1.09001 * 109.47355 * 57.83638 * 3 2 1 5 5 C 1.50701 * 109.46917 * 177.83472 * 3 2 1 6 6 H 1.07994 * 119.99966 * 94.07830 * 5 3 2 7 7 C 1.37881 * 119.99869 * 274.07717 * 5 3 2 8 8 N 1.31513 * 119.99983 * 184.47050 * 7 5 3 9 9 Si 1.86796 * 120.00163 * 4.47089 * 7 5 3 10 10 H 1.48502 * 109.47400 * 264.99028 * 9 7 5 11 11 H 1.48502 * 109.47035 * 24.98748 * 9 7 5 12 12 H 1.48496 * 109.47140 * 144.98869 * 9 7 5 13 13 N 1.46501 * 109.47273 * 297.83090 * 3 2 1 14 14 C 1.34778 * 119.99676 * 84.99974 * 13 3 2 15 15 O 1.21358 * 119.99932 * 0.02562 * 14 13 3 16 16 C 1.49350 * 119.99790 * 180.02562 * 14 13 3 17 17 O 1.21368 * 120.00357 * 359.97438 * 16 14 13 18 18 N 1.34778 * 119.99790 * 180.02562 * 16 14 13 19 19 C 1.46537 * 124.96137 * 6.45105 * 18 16 14 20 20 C 1.53752 * 105.19148 * 179.97438 * 19 18 16 21 21 C 1.51222 * 104.54757 * 359.97438 * 20 19 18 22 22 C 1.38161 * 130.98592 * 179.97438 * 21 20 19 23 23 C 1.38251 * 120.14964 * 179.27293 * 22 21 20 24 24 C 1.38309 * 119.83233 * 0.70406 * 23 22 21 25 25 C 1.37822 * 120.23295 * 359.53539 * 24 23 22 26 26 C 1.50698 * 119.86165 * 180.02562 * 25 24 23 27 27 C 1.38615 * 108.54080 * 359.77336 * 21 20 19 28 28 H 1.09004 * 109.47550 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47175 * 300.00525 * 1 2 3 30 30 H 1.09000 * 109.46705 * 60.00162 * 1 2 3 31 31 H 1.09000 * 109.47175 * 239.99475 * 2 1 3 32 32 H 1.09000 * 109.46705 * 119.99838 * 2 1 3 33 33 H 0.96994 * 120.00232 * 179.97438 * 8 7 5 34 34 H 0.96992 * 119.99957 * 265.00551 * 13 3 2 35 35 H 1.09001 * 110.29532 * 298.88659 * 19 18 16 36 36 H 1.08994 * 110.30085 * 61.03431 * 19 18 16 37 37 H 1.08995 * 110.42471 * 118.76361 * 20 19 18 38 38 H 1.09007 * 110.41493 * 241.22971 * 20 19 18 39 39 H 1.08001 * 119.92931 * 0.02562 * 22 21 20 40 40 H 1.07995 * 120.08227 * 180.25891 * 23 22 21 41 41 H 1.08004 * 119.88406 * 179.56335 * 24 23 22 42 42 H 1.09000 * 109.47232 * 241.56817 * 26 25 24 43 43 H 1.09004 * 109.47467 * 1.56926 * 26 25 24 44 44 H 1.09001 * 109.47533 * 121.57019 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6454 1.9674 0.8699 5 6 3.5461 1.4427 0.0537 6 1 4.1189 1.4975 -0.8601 7 6 4.1926 1.3729 1.2695 8 7 5.5036 1.4616 1.3232 9 14 3.2063 1.1523 2.8405 10 1 2.9492 2.4800 3.4542 11 1 1.9130 0.4943 2.5247 12 1 3.9725 0.3075 3.7914 13 7 1.5949 2.1178 -1.2214 14 6 0.3737 2.6861 -1.2704 15 8 -0.3568 2.6387 -0.3025 16 6 -0.0803 3.3742 -2.5157 17 8 0.6505 3.4220 -3.4836 18 7 -1.3012 3.9429 -2.5645 19 6 -2.2148 4.0691 -1.4257 20 6 -3.4591 4.7791 -1.9842 21 6 -3.1422 5.0079 -3.4450 22 6 -3.8812 5.6012 -4.4504 23 6 -3.3591 5.7064 -5.7262 24 6 -2.0999 5.2030 -5.9981 25 6 -1.3609 4.6059 -4.9997 26 6 0.0105 4.0608 -5.3051 27 6 -1.8776 4.5039 -3.7059 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.9584 1.4129 2.1785 34 1 2.1789 2.1559 -1.9949 35 1 -2.4815 3.0836 -1.0439 36 1 -1.7579 4.6695 -0.6391 37 1 -4.3383 4.1434 -1.8805 38 1 -3.6144 5.7305 -1.4754 39 1 -4.8640 5.9945 -4.2364 40 1 -3.9360 6.1741 -6.5103 41 1 -1.6942 5.2785 -6.9962 42 1 0.0235 2.9864 -5.1218 43 1 0.2540 4.2541 -6.3498 44 1 0.7460 4.5475 -4.6646 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128066826.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:08 Heat of formation + Delta-G solvation = -15.855664 kcal Electronic energy + Delta-G solvation = -27027.807060 eV Core-core repulsion = 23332.085354 eV Total energy + Delta-G solvation = -3695.721706 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.63943 -40.91924 -39.44809 -37.89827 -37.00410 -34.50546 -34.08298 -33.14588 -32.11203 -30.20268 -29.64257 -27.78040 -26.65492 -24.70940 -23.98410 -23.00835 -22.24259 -21.49790 -20.76994 -19.35018 -19.01210 -18.08965 -17.84402 -17.36172 -16.92484 -16.33796 -16.23090 -16.09913 -15.57952 -15.41631 -15.17676 -14.85882 -14.34170 -14.31792 -14.13091 -13.84797 -13.75550 -13.67649 -13.56448 -13.15605 -13.07497 -12.91989 -12.82910 -12.64093 -12.48378 -12.36711 -11.90977 -11.83283 -11.68906 -11.42939 -11.27318 -11.18283 -10.89120 -10.03097 -9.91686 -9.52787 -8.72713 -8.39826 -6.47854 -0.13896 0.39884 0.76016 1.18105 1.33093 1.36593 1.47448 2.10794 2.27808 2.41465 2.82540 2.97436 3.35408 3.53471 3.62856 3.98025 4.05294 4.17620 4.26998 4.30472 4.35490 4.39223 4.47381 4.50457 4.72099 4.74604 4.83619 4.89818 4.92581 4.99317 5.05106 5.07971 5.11067 5.14180 5.20239 5.33695 5.36647 5.48731 5.51845 5.53578 5.57205 5.65290 5.94859 6.03047 6.07800 6.45863 6.56302 6.76881 7.00691 7.20876 8.75347 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.023618 B = 0.003553 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.234203 B = 7877.898215 C = 8464.782866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.130 4.130 3 C 0.248 3.752 4 H 0.041 0.959 5 C -0.537 4.537 6 H 0.049 0.951 7 C 0.030 3.970 8 N -0.932 5.932 9 Si 0.926 3.074 10 H -0.276 1.276 11 H -0.230 1.230 12 H -0.278 1.278 13 N -0.670 5.670 14 C 0.497 3.503 15 O -0.537 6.537 16 C 0.498 3.502 17 O -0.497 6.497 18 N -0.532 5.532 19 C 0.105 3.895 20 C -0.080 4.080 21 C -0.130 4.130 22 C -0.087 4.087 23 C -0.128 4.128 24 C -0.105 4.105 25 C -0.115 4.115 26 C -0.085 4.085 27 C 0.100 3.900 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.040 0.960 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.271 0.729 34 H 0.408 0.592 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.145 0.855 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.337 7.428 -10.552 25.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.169 4.169 3 C 0.145 3.855 4 H 0.058 0.942 5 C -0.575 4.575 6 H 0.067 0.933 7 C -0.171 4.171 8 N -0.571 5.571 9 Si 0.749 3.251 10 H -0.202 1.202 11 H -0.153 1.153 12 H -0.204 1.204 13 N -0.319 5.319 14 C 0.277 3.723 15 O -0.416 6.416 16 C 0.285 3.715 17 O -0.374 6.374 18 N -0.256 5.256 19 C -0.016 4.016 20 C -0.117 4.117 21 C -0.132 4.132 22 C -0.105 4.105 23 C -0.146 4.146 24 C -0.123 4.123 25 C -0.117 4.117 26 C -0.141 4.141 27 C 0.007 3.993 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.243 0.757 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.176 0.824 40 H 0.177 0.823 41 H 0.162 0.838 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.157 7.307 -10.149 25.443 hybrid contribution 1.085 -0.273 0.548 1.246 sum -21.072 7.034 -9.601 24.201 Atomic orbital electron populations 1.21775 0.95423 1.00727 1.01157 1.22135 0.95460 0.97581 1.01758 1.19000 0.92887 0.90100 0.83485 0.94151 1.21182 0.89971 1.52182 0.94174 0.93287 1.25668 0.95643 0.93477 1.02268 1.70005 1.09558 1.50132 1.27354 0.86107 0.80751 0.79106 0.79146 1.20192 1.15311 1.20359 1.46137 1.14846 1.52851 1.18087 1.20037 0.83343 0.80743 0.88165 1.90683 1.53981 1.59879 1.37008 1.20548 0.82755 0.79465 0.88740 1.91247 1.54998 1.57652 1.33523 1.45538 1.15374 1.53475 1.11201 1.22441 0.89005 1.03017 0.87163 1.21275 0.97378 1.02803 0.90202 1.20398 0.93310 1.02153 0.97381 1.20766 1.00431 0.97961 0.91315 1.21458 0.95430 1.00288 0.97440 1.21101 0.95019 0.97610 0.98597 1.19845 0.98240 1.02235 0.91424 1.21213 0.93003 1.00527 0.99363 1.18677 0.94348 0.98731 0.87574 0.92203 0.93335 0.94132 0.92343 0.91889 0.91985 0.75698 0.89079 0.89877 0.86803 0.86935 0.82431 0.82329 0.83763 0.92847 0.93098 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 8.46 71.98 0.61 -4.16 16 2 C -0.13 -5.34 5.15 30.59 0.16 -5.18 16 3 C 0.25 11.39 1.82 44.24 0.08 11.47 16 4 H 0.04 1.96 5.61 -2.39 -0.01 1.95 16 5 C -0.54 -29.15 9.07 25.60 0.23 -28.92 16 6 H 0.05 2.91 8.02 -2.91 -0.02 2.88 16 7 C 0.03 1.66 5.47 84.66 0.46 2.12 16 8 N -0.93 -55.85 13.96 21.45 0.30 -55.55 16 9 Si 0.93 42.35 26.18 68.60 1.80 44.14 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.23 -9.70 5.51 99.48 0.55 -9.15 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 13 N -0.67 -27.61 4.98 -447.53 -2.23 -29.84 16 14 C 0.50 18.86 6.29 87.24 0.55 19.40 16 15 O -0.54 -20.78 11.22 -3.27 -0.04 -20.82 16 16 C 0.50 17.28 7.84 87.24 0.68 17.97 16 17 O -0.50 -17.98 9.51 -3.30 -0.03 -18.01 16 18 N -0.53 -15.80 3.12 -631.13 -1.97 -17.77 16 19 C 0.10 2.49 5.70 86.63 0.49 2.98 16 20 C -0.08 -1.28 6.94 30.27 0.21 -1.07 16 21 C -0.13 -2.62 6.23 -19.63 -0.12 -2.75 16 22 C -0.09 -1.31 10.04 22.25 0.22 -1.09 16 23 C -0.13 -1.90 10.06 22.29 0.22 -1.67 16 24 C -0.10 -2.05 9.64 22.19 0.21 -1.83 16 25 C -0.12 -3.04 5.91 -19.61 -0.12 -3.15 16 26 C -0.09 -2.46 7.82 71.24 0.56 -1.90 16 27 C 0.10 2.71 6.60 38.34 0.25 2.97 16 28 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.05 1.79 7.67 -2.39 -0.02 1.77 16 30 H 0.04 1.45 5.72 -2.39 -0.01 1.44 16 31 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.06 2.61 5.95 -2.39 -0.01 2.60 16 33 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 34 H 0.41 16.48 8.04 -92.71 -0.75 15.73 16 35 H 0.09 2.24 7.31 -2.39 -0.02 2.22 16 36 H 0.08 2.04 7.93 -2.39 -0.02 2.02 16 37 H 0.11 1.33 8.14 -2.39 -0.02 1.32 16 38 H 0.11 1.34 8.14 -2.38 -0.02 1.33 16 39 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 40 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 41 H 0.14 2.18 7.93 -2.91 -0.02 2.16 16 42 H 0.05 1.73 6.59 -2.48 -0.02 1.71 16 43 H 0.05 1.22 7.86 -2.38 -0.02 1.21 16 44 H 0.08 2.62 5.81 -62.98 -0.37 2.26 16 Total: -1.00 -66.08 343.15 2.32 -63.76 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: -0.22 Total: 28.89 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 4.71 Total: 5.19 kcal Atomic # 7 Polarization: -99.26 SS G_CDS: -3.90 Total: -103.16 kcal Atomic # 8 Polarization: -38.76 SS G_CDS: -0.07 Total: -38.82 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.80 Total: 44.14 kcal Total: -66.08 2.32 -63.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128066826.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.908 kcal (2) G-P(sol) polarization free energy of solvation -66.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds