Wall clock time and date at job start Tue Mar 31 2020 11:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47296 * 2 1 4 4 H 1.08993 * 109.47620 * 305.00137 * 3 2 1 5 5 C 1.50707 * 109.47226 * 184.99927 * 3 2 1 6 6 H 1.08001 * 120.00210 * 240.00300 * 5 3 2 7 7 C 1.37876 * 119.99792 * 59.99976 * 5 3 2 8 8 N 1.31521 * 119.99946 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99961 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47174 * 90.00455 * 9 7 5 11 11 H 1.48505 * 109.47200 * 210.00501 * 9 7 5 12 12 H 1.48501 * 109.47395 * 330.00487 * 9 7 5 13 13 N 1.46496 * 109.46788 * 65.00450 * 3 2 1 14 14 C 1.34778 * 119.99741 * 274.99743 * 13 3 2 15 15 O 1.21355 * 120.00380 * 359.97438 * 14 13 3 16 16 C 1.49356 * 119.99818 * 180.02562 * 14 13 3 17 17 O 1.21373 * 119.99916 * 0.02562 * 16 14 13 18 18 N 1.34778 * 119.99818 * 180.02562 * 16 14 13 19 19 C 1.46538 * 124.96124 * 353.07231 * 18 16 14 20 20 C 1.53751 * 105.19094 * 179.97438 * 19 18 16 21 21 C 1.51217 * 104.54604 * 0.02562 * 20 19 18 22 22 C 1.38171 * 130.98614 * 179.97438 * 21 20 19 23 23 C 1.38236 * 120.14960 * 179.97438 * 22 21 20 24 24 C 1.38310 * 119.84086 * 0.06973 * 23 22 21 25 25 C 1.37826 * 120.22826 * 359.96042 * 24 23 22 26 26 C 1.50701 * 119.85874 * 180.02562 * 25 24 23 27 27 C 1.38616 * 108.54278 * 359.97438 * 21 20 19 28 28 H 1.08999 * 109.47186 * 300.00194 * 1 2 3 29 29 H 1.09003 * 109.47118 * 59.99604 * 1 2 3 30 30 H 1.08999 * 109.47541 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46856 * 240.00295 * 2 1 3 32 32 H 1.08995 * 109.47454 * 120.00296 * 2 1 3 33 33 H 0.97003 * 119.99553 * 179.97438 * 8 7 5 34 34 H 0.97002 * 120.00657 * 95.00044 * 13 3 2 35 35 H 1.09000 * 110.29364 * 61.03397 * 19 18 16 36 36 H 1.08995 * 110.29595 * 298.89237 * 19 18 16 37 37 H 1.09006 * 110.41476 * 118.76611 * 20 19 18 38 38 H 1.08998 * 110.41920 * 241.22747 * 20 19 18 39 39 H 1.08005 * 119.92249 * 0.02562 * 22 21 20 40 40 H 1.08003 * 120.07862 * 180.02562 * 23 22 21 41 41 H 1.08001 * 119.88410 * 179.97438 * 24 23 22 42 42 H 1.09002 * 109.47261 * 245.03240 * 26 25 24 43 43 H 1.09004 * 109.46854 * 5.02801 * 26 25 24 44 44 H 1.09000 * 109.47202 * 125.02836 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8812 -1.3818 10 1 6.5548 -0.3503 -0.7603 11 1 6.3829 0.9224 -2.8174 12 1 6.5570 2.0736 -0.6902 13 7 1.6525 2.0973 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3397 2.6327 0.4336 16 6 0.0404 3.3324 2.6431 17 8 0.8159 3.3653 3.5762 18 7 -1.1771 3.8989 2.7585 19 6 -2.1398 4.0506 1.6641 20 6 -3.3587 4.7453 2.2931 21 6 -2.9782 4.9401 3.7436 22 6 -3.6723 5.5092 4.7941 23 6 -3.1011 5.5709 6.0514 24 6 -1.8313 5.0624 6.2561 25 6 -1.1346 4.4943 5.2114 26 6 0.2483 3.9424 5.4439 27 6 -1.7054 4.4268 3.9382 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.8292 -0.0604 -2.9503 34 1 2.2720 2.1230 1.9979 35 1 -2.4221 3.0740 1.2709 36 1 -1.7181 4.6704 0.8728 37 1 -3.5365 5.7083 1.8144 38 1 -4.2414 4.1109 2.2129 39 1 -4.6637 5.9061 4.6326 40 1 -3.6449 6.0156 6.8717 41 1 -1.3842 5.1106 7.2380 42 1 0.9726 4.5253 4.8749 43 1 0.4888 4.0003 6.5055 44 1 0.2837 2.9023 5.1196 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128067017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:12 Heat of formation + Delta-G solvation = -1.319349 kcal Electronic energy + Delta-G solvation = -26931.109086 eV Core-core repulsion = 23236.017722 eV Total energy + Delta-G solvation = -3695.091364 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.47791 -39.47704 -38.04526 -36.79763 -35.22390 -33.18486 -32.40835 -31.16337 -30.93591 -29.27098 -27.32551 -26.78187 -25.18304 -23.25736 -22.88904 -21.57548 -21.31618 -19.70164 -19.25081 -18.08258 -17.30447 -16.59973 -16.20638 -15.73670 -15.46637 -15.29104 -14.92670 -14.59950 -14.28126 -14.20996 -13.61462 -13.27984 -13.09285 -13.01489 -12.77664 -12.66365 -12.16875 -12.14699 -12.03398 -11.77116 -11.61361 -11.52413 -11.33378 -11.06340 -10.94580 -10.89300 -10.46607 -10.30372 -10.21625 -10.12596 -9.71953 -9.16210 -8.70510 -8.63001 -8.56921 -8.05562 -7.67178 -6.20040 -4.29754 1.00925 1.26005 1.99345 2.51108 3.21760 3.28880 3.31689 3.52738 3.77873 3.82863 4.28600 4.45402 4.49315 4.84406 4.89014 5.03713 5.06511 5.12086 5.14191 5.27883 5.37299 5.64234 5.75637 5.79660 5.86945 5.90147 6.08253 6.13394 6.26966 6.28246 6.33186 6.36877 6.51993 6.53390 6.64403 6.87115 6.91924 7.02735 7.13076 7.20285 7.24456 7.44621 7.60108 7.74913 7.92105 8.05429 8.43566 8.60185 8.83926 9.37210 10.85299 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.023899 B = 0.003332 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.338961 B = 8400.528303 C = 9100.613230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.269 3.731 4 H 0.055 0.945 5 C -0.537 4.537 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.903 3.097 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.668 5.668 14 C 0.493 3.507 15 O -0.526 6.526 16 C 0.500 3.500 17 O -0.488 6.488 18 N -0.534 5.534 19 C 0.113 3.887 20 C -0.090 4.090 21 C -0.132 4.132 22 C -0.088 4.088 23 C -0.140 4.140 24 C -0.100 4.100 25 C -0.092 4.092 26 C -0.090 4.090 27 C 0.144 3.856 28 H 0.034 0.966 29 H 0.052 0.948 30 H 0.026 0.974 31 H 0.103 0.897 32 H 0.034 0.966 33 H 0.266 0.734 34 H 0.401 0.599 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.088 0.912 43 H 0.033 0.967 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.965 8.233 12.209 19.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 C 0.169 3.831 4 H 0.072 0.928 5 C -0.575 4.575 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.317 5.317 14 C 0.272 3.728 15 O -0.405 6.405 16 C 0.288 3.712 17 O -0.363 6.363 18 N -0.259 5.259 19 C -0.009 4.009 20 C -0.127 4.127 21 C -0.135 4.135 22 C -0.107 4.107 23 C -0.159 4.159 24 C -0.118 4.118 25 C -0.095 4.095 26 C -0.146 4.146 27 C 0.049 3.951 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.121 0.879 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.235 0.765 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.106 0.894 43 H 0.052 0.948 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.904 8.016 11.701 19.175 hybrid contribution 1.200 -0.045 0.203 1.218 sum -11.704 7.971 11.903 18.499 Atomic orbital electron populations 1.21847 0.98319 0.98384 1.00975 1.21963 0.92633 0.99431 1.02741 1.18998 0.94737 0.89337 0.80077 0.92771 1.21208 0.90331 1.39434 1.06569 0.91796 1.24870 0.98831 0.94600 0.95227 1.69885 1.35261 1.37424 1.09328 0.86411 0.84534 0.78592 0.77398 1.20447 1.21021 1.19758 1.46438 1.13323 1.52720 1.19188 1.19646 0.84448 0.81482 0.87218 1.90713 1.50879 1.59338 1.39572 1.21063 0.81975 0.78451 0.89718 1.91192 1.51249 1.57149 1.36701 1.45535 1.15729 1.55197 1.09415 1.22279 0.87071 1.02973 0.88533 1.21237 0.98476 1.01811 0.91211 1.20056 0.94388 1.02976 0.96071 1.20315 0.99487 0.99348 0.91545 1.20983 0.95907 1.02133 0.96829 1.20795 0.94645 0.98341 0.98037 1.19682 0.98117 1.01093 0.90596 1.21395 0.91857 1.02910 0.98437 1.18340 0.93113 0.96535 0.87084 0.94688 0.92934 0.95520 0.87856 0.94715 0.92437 0.76495 0.88432 0.89298 0.89194 0.89137 0.85870 0.85776 0.85616 0.89402 0.94839 0.89703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.51 37.16 0.32 -2.59 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.16 16 3 C 0.27 6.53 2.24 -69.08 -0.15 6.38 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.88 8.73 -34.44 -0.30 -14.19 16 6 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -23.92 11.29 55.43 0.63 -23.30 16 9 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.67 -13.90 5.01 -55.40 -0.28 -14.18 16 14 C 0.49 9.63 6.41 -11.63 -0.07 9.56 16 15 O -0.53 -10.86 11.23 5.49 0.06 -10.80 16 16 C 0.50 8.70 7.83 -11.63 -0.09 8.61 16 17 O -0.49 -8.54 9.51 5.48 0.05 -8.49 16 18 N -0.53 -8.23 3.12 -113.43 -0.35 -8.58 16 19 C 0.11 1.47 5.70 -3.63 -0.02 1.45 16 20 C -0.09 -0.90 6.94 -27.24 -0.19 -1.09 16 21 C -0.13 -1.57 6.23 -104.25 -0.65 -2.22 16 22 C -0.09 -0.89 10.04 -39.61 -0.40 -1.29 16 23 C -0.14 -1.36 10.06 -39.56 -0.40 -1.76 16 24 C -0.10 -1.12 9.64 -39.71 -0.38 -1.50 16 25 C -0.09 -1.27 5.91 -104.23 -0.62 -1.89 16 26 C -0.09 -1.28 7.81 36.01 0.28 -1.00 16 27 C 0.14 2.07 6.60 -83.63 -0.55 1.52 16 28 H 0.03 0.72 5.65 -51.93 -0.29 0.42 16 29 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.10 2.67 5.95 -51.92 -0.31 2.36 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.40 7.83 8.01 -40.82 -0.33 7.50 16 35 H 0.10 1.33 7.28 -51.93 -0.38 0.95 16 36 H 0.09 1.17 7.95 -51.93 -0.41 0.75 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 40 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 41 H 0.13 1.14 7.93 -52.49 -0.42 0.72 16 42 H 0.09 1.38 6.34 -50.34 -0.32 1.06 16 43 H 0.03 0.40 7.87 -51.93 -0.41 -0.01 16 44 H 0.08 1.35 6.10 -51.71 -0.32 1.03 16 LS Contribution 347.66 15.07 5.24 5.24 Total: -1.00 -28.18 347.66 -9.20 -37.38 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -6.06 Total: 8.93 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -3.47 Total: -1.49 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: -0.01 Total: -46.06 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: 0.11 Total: -19.29 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.18 -9.20 -37.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128067017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.063 kcal (2) G-P(sol) polarization free energy of solvation -28.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds