Wall clock time and date at job start Tue Mar 31 2020 11:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47296 * 2 1 4 4 H 1.08993 * 109.47620 * 305.00137 * 3 2 1 5 5 C 1.50707 * 109.47226 * 184.99927 * 3 2 1 6 6 H 1.08001 * 120.00210 * 240.00300 * 5 3 2 7 7 C 1.37876 * 119.99792 * 59.99976 * 5 3 2 8 8 N 1.31521 * 119.99946 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99961 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47174 * 90.00455 * 9 7 5 11 11 H 1.48505 * 109.47200 * 210.00501 * 9 7 5 12 12 H 1.48501 * 109.47395 * 330.00487 * 9 7 5 13 13 N 1.46496 * 109.46788 * 65.00450 * 3 2 1 14 14 C 1.34778 * 119.99741 * 274.99743 * 13 3 2 15 15 O 1.21355 * 120.00380 * 359.97438 * 14 13 3 16 16 C 1.49356 * 119.99818 * 180.02562 * 14 13 3 17 17 O 1.21373 * 119.99916 * 0.02562 * 16 14 13 18 18 N 1.34778 * 119.99818 * 180.02562 * 16 14 13 19 19 C 1.46538 * 124.96124 * 353.07231 * 18 16 14 20 20 C 1.53751 * 105.19094 * 179.97438 * 19 18 16 21 21 C 1.51217 * 104.54604 * 0.02562 * 20 19 18 22 22 C 1.38171 * 130.98614 * 179.97438 * 21 20 19 23 23 C 1.38236 * 120.14960 * 179.97438 * 22 21 20 24 24 C 1.38310 * 119.84086 * 0.06973 * 23 22 21 25 25 C 1.37826 * 120.22826 * 359.96042 * 24 23 22 26 26 C 1.50701 * 119.85874 * 180.02562 * 25 24 23 27 27 C 1.38616 * 108.54278 * 359.97438 * 21 20 19 28 28 H 1.08999 * 109.47186 * 300.00194 * 1 2 3 29 29 H 1.09003 * 109.47118 * 59.99604 * 1 2 3 30 30 H 1.08999 * 109.47541 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46856 * 240.00295 * 2 1 3 32 32 H 1.08995 * 109.47454 * 120.00296 * 2 1 3 33 33 H 0.97003 * 119.99553 * 179.97438 * 8 7 5 34 34 H 0.97002 * 120.00657 * 95.00044 * 13 3 2 35 35 H 1.09000 * 110.29364 * 61.03397 * 19 18 16 36 36 H 1.08995 * 110.29595 * 298.89237 * 19 18 16 37 37 H 1.09006 * 110.41476 * 118.76611 * 20 19 18 38 38 H 1.08998 * 110.41920 * 241.22747 * 20 19 18 39 39 H 1.08005 * 119.92249 * 0.02562 * 22 21 20 40 40 H 1.08003 * 120.07862 * 180.02562 * 23 22 21 41 41 H 1.08001 * 119.88410 * 179.97438 * 24 23 22 42 42 H 1.09002 * 109.47261 * 245.03240 * 26 25 24 43 43 H 1.09004 * 109.46854 * 5.02801 * 26 25 24 44 44 H 1.09000 * 109.47202 * 125.02836 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8812 -1.3818 10 1 6.5548 -0.3503 -0.7603 11 1 6.3829 0.9224 -2.8174 12 1 6.5570 2.0736 -0.6902 13 7 1.6525 2.0973 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3397 2.6327 0.4336 16 6 0.0404 3.3324 2.6431 17 8 0.8159 3.3653 3.5762 18 7 -1.1771 3.8989 2.7585 19 6 -2.1398 4.0506 1.6641 20 6 -3.3587 4.7453 2.2931 21 6 -2.9782 4.9401 3.7436 22 6 -3.6723 5.5092 4.7941 23 6 -3.1011 5.5709 6.0514 24 6 -1.8313 5.0624 6.2561 25 6 -1.1346 4.4943 5.2114 26 6 0.2483 3.9424 5.4439 27 6 -1.7054 4.4268 3.9382 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.8292 -0.0604 -2.9503 34 1 2.2720 2.1230 1.9979 35 1 -2.4221 3.0740 1.2709 36 1 -1.7181 4.6704 0.8728 37 1 -3.5365 5.7083 1.8144 38 1 -4.2414 4.1109 2.2129 39 1 -4.6637 5.9061 4.6326 40 1 -3.6449 6.0156 6.8717 41 1 -1.3842 5.1106 7.2380 42 1 0.9726 4.5253 4.8749 43 1 0.4888 4.0003 6.5055 44 1 0.2837 2.9023 5.1196 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128067017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:11 Heat of formation + Delta-G solvation = -17.158086 kcal Electronic energy + Delta-G solvation = -26931.795905 eV Core-core repulsion = 23236.017722 eV Total energy + Delta-G solvation = -3695.778183 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.62470 -40.85209 -39.41273 -37.87257 -36.96088 -34.47510 -34.00252 -32.84254 -32.09126 -30.20149 -29.20122 -27.77523 -26.60801 -24.96813 -23.97991 -22.92516 -22.23661 -21.47218 -20.67334 -19.31203 -18.77815 -17.91682 -17.74927 -17.25943 -16.86935 -16.31160 -16.22926 -16.12815 -15.56903 -15.35075 -15.16042 -14.64549 -14.31284 -14.24331 -14.12770 -13.76928 -13.56424 -13.49491 -13.22510 -13.16564 -13.07160 -12.92688 -12.82837 -12.69813 -12.39146 -12.22838 -12.12254 -11.82352 -11.66564 -11.54222 -11.18669 -11.12079 -10.58786 -10.02756 -9.83500 -9.53475 -8.71300 -8.20518 -6.37566 -0.12336 0.40202 0.78277 1.22614 1.43645 1.44764 1.54959 2.14315 2.34826 2.51818 2.83188 3.09166 3.39829 3.53432 3.63825 3.98225 4.05667 4.16773 4.30836 4.39547 4.45563 4.50764 4.51839 4.67817 4.73345 4.84106 4.90049 4.94504 4.98732 4.99500 5.07922 5.08520 5.20582 5.35145 5.36168 5.37800 5.51107 5.53668 5.54406 5.65431 5.68212 5.78183 6.02917 6.04196 6.09150 6.47511 6.65174 6.82468 7.10297 7.34631 8.84635 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.023899 B = 0.003332 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.338961 B = 8400.528303 C = 9100.613230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.123 4.123 3 C 0.279 3.721 4 H 0.015 0.985 5 C -0.555 4.555 6 H 0.067 0.933 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.269 1.269 13 N -0.672 5.672 14 C 0.493 3.507 15 O -0.540 6.540 16 C 0.498 3.502 17 O -0.495 6.495 18 N -0.533 5.533 19 C 0.105 3.895 20 C -0.079 4.079 21 C -0.131 4.131 22 C -0.086 4.086 23 C -0.128 4.128 24 C -0.103 4.103 25 C -0.116 4.116 26 C -0.081 4.081 27 C 0.101 3.899 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.267 0.733 34 H 0.406 0.594 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.158 0.842 40 H 0.160 0.840 41 H 0.146 0.854 42 H 0.066 0.934 43 H 0.052 0.948 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.718 9.521 14.185 22.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 C 0.177 3.823 4 H 0.033 0.967 5 C -0.593 4.593 6 H 0.085 0.915 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.793 3.207 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.193 1.193 13 N -0.322 5.322 14 C 0.273 3.727 15 O -0.419 6.419 16 C 0.285 3.715 17 O -0.372 6.372 18 N -0.257 5.257 19 C -0.016 4.016 20 C -0.116 4.116 21 C -0.134 4.134 22 C -0.104 4.104 23 C -0.146 4.146 24 C -0.122 4.122 25 C -0.119 4.119 26 C -0.137 4.137 27 C 0.007 3.993 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.242 0.758 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.176 0.824 40 H 0.177 0.823 41 H 0.164 0.836 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.698 9.328 13.707 22.157 hybrid contribution 1.613 -0.364 -0.338 1.688 sum -13.085 8.964 13.369 20.743 Atomic orbital electron populations 1.21683 0.96563 0.99575 1.00296 1.21815 0.94132 0.98614 1.01589 1.18604 0.94000 0.89468 0.80234 0.96744 1.21518 0.91261 1.39576 1.06913 0.91534 1.25676 1.03184 0.94154 0.94851 1.70011 1.36987 1.37942 1.09749 0.85398 0.79210 0.78773 0.77298 1.19710 1.20824 1.19320 1.46208 1.14239 1.53382 1.18332 1.20075 0.83683 0.80857 0.88095 1.90694 1.51125 1.59573 1.40472 1.20514 0.83174 0.79292 0.88522 1.91227 1.51827 1.57838 1.36316 1.45511 1.15033 1.54379 1.10752 1.22404 0.88080 1.02756 0.88314 1.21265 0.97358 1.02977 0.90018 1.20395 0.93376 1.02249 0.97350 1.20765 1.00649 0.98098 0.90892 1.21456 0.95116 1.00248 0.97811 1.21105 0.95298 0.97638 0.98139 1.19857 0.98099 1.02478 0.91437 1.21139 0.92339 1.01130 0.99072 1.18686 0.94707 0.98971 0.86896 0.94453 0.94403 0.93312 0.90244 0.94389 0.92342 0.75836 0.89495 0.90041 0.86886 0.86904 0.82440 0.82254 0.83616 0.91586 0.92901 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 8.51 71.98 0.61 -4.71 16 2 C -0.12 -5.92 5.45 30.59 0.17 -5.76 16 3 C 0.28 14.13 2.24 44.25 0.10 14.23 16 4 H 0.01 0.85 7.58 -2.39 -0.02 0.83 16 5 C -0.55 -29.45 8.73 25.60 0.22 -29.23 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 1.18 5.29 84.65 0.45 1.63 16 8 N -0.91 -50.61 11.29 21.45 0.24 -50.37 16 9 Si 0.97 42.03 29.54 68.60 2.03 44.06 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 12 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 13 N -0.67 -29.23 5.01 -447.54 -2.24 -31.48 16 14 C 0.49 20.11 6.41 87.24 0.56 20.67 16 15 O -0.54 -23.26 11.23 -3.26 -0.04 -23.30 16 16 C 0.50 18.06 7.83 87.24 0.68 18.75 16 17 O -0.50 -18.20 9.51 -3.32 -0.03 -18.23 16 18 N -0.53 -16.68 3.12 -631.12 -1.97 -18.65 16 19 C 0.11 2.74 5.70 86.63 0.49 3.24 16 20 C -0.08 -1.40 6.94 30.27 0.21 -1.19 16 21 C -0.13 -2.79 6.23 -19.63 -0.12 -2.91 16 22 C -0.09 -1.36 10.04 22.25 0.22 -1.13 16 23 C -0.13 -1.94 10.06 22.29 0.22 -1.72 16 24 C -0.10 -2.03 9.64 22.19 0.21 -1.82 16 25 C -0.12 -3.12 5.91 -19.61 -0.12 -3.23 16 26 C -0.08 -2.34 7.81 71.24 0.56 -1.78 16 27 C 0.10 2.83 6.60 38.34 0.25 3.08 16 28 H 0.04 1.56 5.65 -2.39 -0.01 1.55 16 29 H 0.04 1.71 7.85 -2.39 -0.02 1.69 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.83 16 31 H 0.08 4.25 5.95 -2.38 -0.01 4.24 16 32 H 0.04 1.76 8.14 -2.39 -0.02 1.75 16 33 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 34 H 0.41 16.60 8.01 -92.71 -0.74 15.86 16 35 H 0.09 2.41 7.28 -2.39 -0.02 2.39 16 36 H 0.08 2.19 7.95 -2.39 -0.02 2.17 16 37 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.15 2.18 7.93 -2.91 -0.02 2.16 16 42 H 0.07 2.16 6.34 -11.17 -0.07 2.09 16 43 H 0.05 1.25 7.87 -2.38 -0.02 1.24 16 44 H 0.06 2.05 6.10 -32.79 -0.20 1.85 16 Total: -1.00 -63.40 347.66 2.76 -60.64 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 0.05 Total: 29.20 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 4.73 Total: 8.13 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -3.97 Total: -100.49 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -0.07 Total: -41.53 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -63.40 2.76 -60.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128067017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.479 kcal (2) G-P(sol) polarization free energy of solvation -63.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds