Wall clock time and date at job start Tue Mar 31 2020 11:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47316 * 2 1 4 4 H 1.08993 * 109.47268 * 304.99834 * 3 2 1 5 5 C 1.50706 * 109.47149 * 184.99720 * 3 2 1 6 6 H 1.07995 * 120.00017 * 239.99803 * 5 3 2 7 7 C 1.37875 * 119.99697 * 60.00128 * 5 3 2 8 8 N 1.31512 * 120.00332 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99735 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47297 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46728 * 120.00301 * 9 7 5 12 12 H 1.48495 * 109.46930 * 239.99747 * 9 7 5 13 13 N 1.46504 * 109.47320 * 65.00029 * 3 2 1 14 14 C 1.34777 * 119.99858 * 275.00341 * 13 3 2 15 15 O 1.21363 * 119.99801 * 359.97438 * 14 13 3 16 16 C 1.49350 * 119.99926 * 180.27514 * 14 13 3 17 17 O 1.21373 * 120.00206 * 359.71895 * 16 14 13 18 18 N 1.34775 * 119.99787 * 179.72511 * 16 14 13 19 19 C 1.46532 * 124.96279 * 0.02562 * 18 16 14 20 20 C 1.53750 * 105.19114 * 179.97438 * 19 18 16 21 21 C 1.51212 * 104.55236 * 0.02562 * 20 19 18 22 22 C 1.38163 * 130.99160 * 180.02562 * 21 20 19 23 23 C 1.38241 * 120.15344 * 180.02562 * 22 21 20 24 24 C 1.38307 * 119.83530 * 359.97438 * 23 22 21 25 25 C 1.50707 * 119.88550 * 180.02562 * 24 23 22 26 26 C 1.37828 * 120.23585 * 359.97438 * 24 23 22 27 27 C 1.38618 * 108.53777 * 359.75638 * 21 20 19 28 28 H 1.09001 * 109.46988 * 300.00007 * 1 2 3 29 29 H 1.08994 * 109.46809 * 59.99850 * 1 2 3 30 30 H 1.08998 * 109.47289 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47427 * 239.99793 * 2 1 3 32 32 H 1.09003 * 109.47017 * 119.99926 * 2 1 3 33 33 H 0.96996 * 120.00701 * 180.02562 * 8 7 5 34 34 H 0.97000 * 119.99825 * 94.99436 * 13 3 2 35 35 H 1.08997 * 110.29686 * 298.90861 * 19 18 16 36 36 H 1.08991 * 110.29822 * 60.95216 * 19 18 16 37 37 H 1.09007 * 110.41841 * 118.77019 * 20 19 18 38 38 H 1.08998 * 110.41848 * 241.22679 * 20 19 18 39 39 H 1.07991 * 119.92157 * 359.97438 * 22 21 20 40 40 H 1.07997 * 120.07944 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.46896 * 89.99792 * 25 24 23 42 42 H 1.08996 * 109.47073 * 209.99752 * 25 24 23 43 43 H 1.09000 * 109.46772 * 330.00022 * 25 24 23 44 44 H 1.07997 * 119.86480 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1728 9 14 6.0050 0.8811 -1.3817 10 1 6.5988 1.5460 -0.1941 11 1 6.4970 -0.5177 -1.4629 12 1 6.3991 1.6165 -2.6101 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3397 2.6326 0.4335 16 6 0.0424 3.3375 2.6410 17 8 0.8175 3.3696 3.5744 18 7 -1.1728 3.9093 2.7542 19 6 -2.1905 3.9341 1.7003 20 6 -3.3825 4.6908 2.3090 21 6 -2.9315 5.0482 3.7074 22 6 -3.5774 5.7283 4.7218 23 6 -2.9439 5.9336 5.9333 24 6 -1.6608 5.4558 6.1284 25 6 -0.9693 5.6785 7.4489 26 6 -1.0125 4.7759 5.1200 27 6 -1.6478 4.5600 3.8947 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8293 -0.0620 -2.9494 34 1 2.2720 2.1231 1.9978 35 1 -1.8147 4.4624 0.8241 36 1 -2.4824 2.9187 1.4325 37 1 -3.5930 5.5935 1.7353 38 1 -4.2623 4.0484 2.3452 39 1 -4.5792 6.1011 4.5678 40 1 -3.4498 6.4658 6.7253 41 1 -1.1861 4.8454 8.1175 42 1 0.1068 5.7453 7.2888 43 1 -1.3286 6.6057 7.8953 44 1 -0.0104 4.4057 5.2787 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128213057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:19 Heat of formation + Delta-G solvation = -42.703131 kcal Electronic energy + Delta-G solvation = -26441.778406 eV Core-core repulsion = 22744.892506 eV Total energy + Delta-G solvation = -3696.885899 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.33631 -39.54149 -38.01440 -36.88449 -35.26654 -32.98947 -32.40832 -31.03810 -30.77796 -30.10909 -27.32233 -26.43013 -25.15840 -23.27103 -22.85612 -22.20561 -20.80915 -19.82430 -19.44988 -17.83554 -17.00618 -16.46667 -16.18053 -15.60121 -15.50314 -15.42423 -14.89873 -14.68738 -14.15062 -13.90102 -13.82649 -13.76207 -13.38319 -12.78149 -12.77767 -12.59158 -12.28279 -12.17411 -12.04346 -11.91585 -11.78364 -11.63076 -11.36854 -11.23153 -11.03276 -10.92684 -10.80698 -10.37607 -10.29298 -10.16320 -9.73110 -9.16267 -9.03808 -8.74675 -8.59791 -8.08598 -7.83894 -6.20277 -4.29906 1.02541 1.25776 1.97304 2.47686 3.20987 3.29304 3.32931 3.52134 3.75934 3.76870 4.28467 4.44167 4.48470 4.74717 4.87161 4.98820 5.05813 5.06465 5.12361 5.26504 5.36872 5.46655 5.47774 5.67117 5.72272 5.80809 5.85063 5.94527 6.12100 6.28045 6.29165 6.32963 6.34966 6.51512 6.51971 6.90221 6.91763 7.01627 7.10889 7.17062 7.23868 7.42232 7.59593 7.72916 7.83308 8.04918 8.41084 8.58628 8.82782 9.37099 10.85155 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.021977 B = 0.003136 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.778863 B = 8926.828960 C = 9770.514915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.269 3.731 4 H 0.055 0.945 5 C -0.537 4.537 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.903 3.097 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.667 5.667 14 C 0.497 3.503 15 O -0.524 6.524 16 C 0.513 3.487 17 O -0.504 6.504 18 N -0.533 5.533 19 C 0.112 3.888 20 C -0.090 4.090 21 C -0.140 4.140 22 C -0.077 4.077 23 C -0.144 4.144 24 C -0.064 4.064 25 C -0.113 4.113 26 C -0.132 4.132 27 C 0.150 3.850 28 H 0.034 0.966 29 H 0.052 0.948 30 H 0.026 0.974 31 H 0.104 0.896 32 H 0.034 0.966 33 H 0.265 0.735 34 H 0.401 0.599 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.490 9.013 12.827 20.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.168 3.832 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.083 0.917 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.316 5.316 14 C 0.276 3.724 15 O -0.403 6.403 16 C 0.298 3.702 17 O -0.378 6.378 18 N -0.257 5.257 19 C -0.010 4.010 20 C -0.127 4.127 21 C -0.143 4.143 22 C -0.096 4.096 23 C -0.163 4.163 24 C -0.065 4.065 25 C -0.169 4.169 26 C -0.153 4.153 27 C 0.055 3.945 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.122 0.878 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.236 0.764 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.425 8.784 12.336 20.238 hybrid contribution 1.250 -0.091 0.163 1.264 sum -12.176 8.693 12.499 19.495 Atomic orbital electron populations 1.21849 0.98309 0.98422 1.00971 1.21965 0.92655 0.99383 1.02788 1.19026 0.94817 0.89374 0.80003 0.92704 1.21246 0.90308 1.39373 1.06580 0.91719 1.24869 0.98859 0.94577 0.95224 1.69885 1.35201 1.37450 1.09361 0.86354 0.84506 0.77857 0.78214 1.19614 1.20786 1.20809 1.46464 1.13267 1.52581 1.19267 1.19449 0.84542 0.81522 0.86918 1.90724 1.50918 1.59374 1.39253 1.20947 0.80413 0.78961 0.89840 1.90688 1.49923 1.56833 1.40373 1.45667 1.14944 1.51521 1.13537 1.22304 0.85905 1.02897 0.89878 1.21230 0.98376 1.00988 0.92098 1.20061 0.94461 1.02954 0.96831 1.20309 0.99443 0.97885 0.91960 1.20877 0.94988 1.03037 0.97427 1.19665 0.94378 0.96838 0.95578 1.20785 1.00552 1.02010 0.93598 1.20867 1.01629 1.01856 0.90922 1.18424 0.93322 0.94689 0.88058 0.94713 0.92894 0.95473 0.87808 0.94676 0.92476 0.76421 0.88763 0.88796 0.89141 0.89155 0.85754 0.85790 0.91051 0.91322 0.91464 0.84238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.51 37.16 0.32 -2.60 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.56 2.24 -69.08 -0.15 6.40 16 4 H 0.06 1.51 7.58 -51.93 -0.39 1.12 16 5 C -0.54 -13.96 8.73 -34.44 -0.30 -14.26 16 6 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -23.95 11.29 55.43 0.63 -23.33 16 9 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.67 -14.16 5.01 -55.40 -0.28 -14.44 16 14 C 0.50 9.90 6.42 -11.63 -0.07 9.83 16 15 O -0.52 -10.87 11.19 5.49 0.06 -10.81 16 16 C 0.51 9.33 7.85 -11.63 -0.09 9.24 16 17 O -0.50 -9.69 14.64 5.48 0.08 -9.61 16 18 N -0.53 -8.43 3.12 -113.43 -0.35 -8.78 16 19 C 0.11 1.46 5.67 -3.63 -0.02 1.44 16 20 C -0.09 -0.90 6.94 -27.24 -0.19 -1.09 16 21 C -0.14 -1.68 6.23 -104.26 -0.65 -2.33 16 22 C -0.08 -0.78 10.04 -39.61 -0.40 -1.17 16 23 C -0.14 -1.43 9.71 -39.55 -0.38 -1.81 16 24 C -0.06 -0.73 5.87 -104.74 -0.61 -1.34 16 25 C -0.11 -0.97 10.00 36.01 0.36 -0.61 16 26 C -0.13 -1.87 9.10 -39.19 -0.36 -2.23 16 27 C 0.15 2.21 6.62 -83.62 -0.55 1.65 16 28 H 0.03 0.71 5.65 -51.93 -0.29 0.42 16 29 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 34 H 0.40 8.08 8.01 -40.82 -0.33 7.75 16 35 H 0.09 1.26 7.63 -51.93 -0.40 0.87 16 36 H 0.09 1.25 7.62 -51.93 -0.40 0.85 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 43 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 44 H 0.14 2.16 6.27 -52.49 -0.33 1.83 16 LS Contribution 356.36 15.07 5.37 5.37 Total: -1.00 -28.94 356.36 -9.06 -38.00 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -6.19 Total: 8.60 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -3.35 Total: -0.36 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: -0.01 Total: -46.54 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: 0.14 Total: -20.42 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.94 -9.06 -38.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128213057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.702 kcal (2) G-P(sol) polarization free energy of solvation -28.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds