Wall clock time and date at job start Tue Mar 31 2020 11:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47316 * 2 1 4 4 H 1.08993 * 109.47268 * 304.99834 * 3 2 1 5 5 C 1.50706 * 109.47149 * 184.99720 * 3 2 1 6 6 H 1.07995 * 120.00017 * 239.99803 * 5 3 2 7 7 C 1.37875 * 119.99697 * 60.00128 * 5 3 2 8 8 N 1.31512 * 120.00332 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99735 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47297 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46728 * 120.00301 * 9 7 5 12 12 H 1.48495 * 109.46930 * 239.99747 * 9 7 5 13 13 N 1.46504 * 109.47320 * 65.00029 * 3 2 1 14 14 C 1.34777 * 119.99858 * 275.00341 * 13 3 2 15 15 O 1.21363 * 119.99801 * 359.97438 * 14 13 3 16 16 C 1.49350 * 119.99926 * 180.27514 * 14 13 3 17 17 O 1.21373 * 120.00206 * 359.71895 * 16 14 13 18 18 N 1.34775 * 119.99787 * 179.72511 * 16 14 13 19 19 C 1.46532 * 124.96279 * 0.02562 * 18 16 14 20 20 C 1.53750 * 105.19114 * 179.97438 * 19 18 16 21 21 C 1.51212 * 104.55236 * 0.02562 * 20 19 18 22 22 C 1.38163 * 130.99160 * 180.02562 * 21 20 19 23 23 C 1.38241 * 120.15344 * 180.02562 * 22 21 20 24 24 C 1.38307 * 119.83530 * 359.97438 * 23 22 21 25 25 C 1.50707 * 119.88550 * 180.02562 * 24 23 22 26 26 C 1.37828 * 120.23585 * 359.97438 * 24 23 22 27 27 C 1.38618 * 108.53777 * 359.75638 * 21 20 19 28 28 H 1.09001 * 109.46988 * 300.00007 * 1 2 3 29 29 H 1.08994 * 109.46809 * 59.99850 * 1 2 3 30 30 H 1.08998 * 109.47289 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47427 * 239.99793 * 2 1 3 32 32 H 1.09003 * 109.47017 * 119.99926 * 2 1 3 33 33 H 0.96996 * 120.00701 * 180.02562 * 8 7 5 34 34 H 0.97000 * 119.99825 * 94.99436 * 13 3 2 35 35 H 1.08997 * 110.29686 * 298.90861 * 19 18 16 36 36 H 1.08991 * 110.29822 * 60.95216 * 19 18 16 37 37 H 1.09007 * 110.41841 * 118.77019 * 20 19 18 38 38 H 1.08998 * 110.41848 * 241.22679 * 20 19 18 39 39 H 1.07991 * 119.92157 * 359.97438 * 22 21 20 40 40 H 1.07997 * 120.07944 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.46896 * 89.99792 * 25 24 23 42 42 H 1.08996 * 109.47073 * 209.99752 * 25 24 23 43 43 H 1.09000 * 109.46772 * 330.00022 * 25 24 23 44 44 H 1.07997 * 119.86480 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1728 9 14 6.0050 0.8811 -1.3817 10 1 6.5988 1.5460 -0.1941 11 1 6.4970 -0.5177 -1.4629 12 1 6.3991 1.6165 -2.6101 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3397 2.6326 0.4335 16 6 0.0424 3.3375 2.6410 17 8 0.8175 3.3696 3.5744 18 7 -1.1728 3.9093 2.7542 19 6 -2.1905 3.9341 1.7003 20 6 -3.3825 4.6908 2.3090 21 6 -2.9315 5.0482 3.7074 22 6 -3.5774 5.7283 4.7218 23 6 -2.9439 5.9336 5.9333 24 6 -1.6608 5.4558 6.1284 25 6 -0.9693 5.6785 7.4489 26 6 -1.0125 4.7759 5.1200 27 6 -1.6478 4.5600 3.8947 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8293 -0.0620 -2.9494 34 1 2.2720 2.1231 1.9978 35 1 -1.8147 4.4624 0.8241 36 1 -2.4824 2.9187 1.4325 37 1 -3.5930 5.5935 1.7353 38 1 -4.2623 4.0484 2.3452 39 1 -4.5792 6.1011 4.5678 40 1 -3.4498 6.4658 6.7253 41 1 -1.1861 4.8454 8.1175 42 1 0.1068 5.7453 7.2888 43 1 -1.3286 6.6057 7.8953 44 1 -0.0104 4.4057 5.2787 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128213057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:19 Heat of formation + Delta-G solvation = -59.113961 kcal Electronic energy + Delta-G solvation = -26442.490033 eV Core-core repulsion = 22744.892506 eV Total energy + Delta-G solvation = -3697.597526 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.53032 -40.91395 -39.44203 -37.97176 -37.03726 -34.44370 -33.83745 -32.85808 -31.66665 -31.10123 -29.21248 -27.27779 -26.61637 -25.01365 -23.76107 -23.55569 -21.91368 -21.43886 -20.99538 -19.31696 -18.36895 -17.93545 -17.70456 -17.19508 -16.72995 -16.38622 -16.29856 -16.24406 -15.52473 -15.21648 -15.05099 -14.70198 -14.63285 -14.54460 -13.92895 -13.61233 -13.53672 -13.47623 -13.23689 -13.13897 -13.03550 -12.89917 -12.83939 -12.76712 -12.72012 -12.35083 -12.17317 -12.13071 -11.83239 -11.62967 -11.15320 -11.11666 -10.64256 -10.53946 -9.88283 -9.63157 -8.86921 -8.21452 -6.38454 -0.13869 0.37082 0.71969 1.14906 1.42071 1.44417 1.55864 2.08471 2.32617 2.47231 2.77003 3.08273 3.33975 3.50700 3.60633 3.95530 4.07721 4.15706 4.17729 4.39166 4.45611 4.51666 4.53881 4.64207 4.68744 4.78272 4.82898 4.87621 4.97891 4.98784 4.99300 5.11694 5.20224 5.26157 5.32424 5.35848 5.39614 5.45501 5.53472 5.64055 5.67782 5.76830 5.96314 6.03150 6.08090 6.35503 6.62870 6.72656 7.04173 7.33287 8.83969 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.021977 B = 0.003136 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.778863 B = 8926.828960 C = 9770.514915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.123 4.123 3 C 0.278 3.722 4 H 0.017 0.983 5 C -0.555 4.555 6 H 0.066 0.934 7 C 0.023 3.977 8 N -0.908 5.908 9 Si 0.969 3.031 10 H -0.267 1.267 11 H -0.276 1.276 12 H -0.280 1.280 13 N -0.672 5.672 14 C 0.499 3.501 15 O -0.533 6.533 16 C 0.511 3.489 17 O -0.525 6.525 18 N -0.530 5.530 19 C 0.103 3.897 20 C -0.078 4.078 21 C -0.138 4.138 22 C -0.073 4.073 23 C -0.133 4.133 24 C -0.072 4.072 25 C -0.112 4.112 26 C -0.155 4.155 27 C 0.106 3.894 28 H 0.036 0.964 29 H 0.038 0.962 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.037 0.963 33 H 0.268 0.732 34 H 0.406 0.594 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.162 0.838 40 H 0.160 0.840 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.091 0.909 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.507 10.383 14.462 23.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.162 4.162 3 C 0.176 3.824 4 H 0.035 0.965 5 C -0.593 4.593 6 H 0.084 0.916 7 C -0.178 4.178 8 N -0.546 5.546 9 Si 0.794 3.206 10 H -0.191 1.191 11 H -0.202 1.202 12 H -0.206 1.206 13 N -0.321 5.321 14 C 0.278 3.722 15 O -0.412 6.412 16 C 0.296 3.704 17 O -0.402 6.402 18 N -0.253 5.253 19 C -0.018 4.018 20 C -0.115 4.115 21 C -0.140 4.140 22 C -0.091 4.091 23 C -0.151 4.151 24 C -0.072 4.072 25 C -0.168 4.168 26 C -0.176 4.176 27 C 0.012 3.988 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.241 0.759 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.180 0.820 40 H 0.178 0.822 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.110 0.890 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -15.491 10.180 13.993 23.225 hybrid contribution 1.750 -0.428 -0.280 1.824 sum -13.740 9.752 13.713 21.725 Atomic orbital electron populations 1.21690 0.96465 0.99687 1.00347 1.21819 0.94242 0.98484 1.01651 1.18654 0.94089 0.89567 0.80077 0.96505 1.21539 0.91232 1.39611 1.06932 0.91617 1.25667 1.03200 0.94109 0.94832 1.70003 1.36941 1.37889 1.09779 0.85345 0.79189 0.77973 0.78144 1.19099 1.20182 1.20593 1.46254 1.14140 1.53246 1.18469 1.19758 0.83847 0.80948 0.87631 1.90706 1.51078 1.59487 1.39943 1.20418 0.81545 0.79688 0.88727 1.90676 1.50843 1.58139 1.40505 1.45687 1.14219 1.50524 1.14839 1.22479 0.86682 1.03142 0.89479 1.21269 0.97331 1.01939 0.90961 1.20397 0.93219 1.02345 0.98065 1.20776 1.00782 0.96479 0.91097 1.21352 0.94027 1.01457 0.98279 1.20003 0.95300 0.96156 0.95778 1.20839 0.99903 1.03548 0.92549 1.20904 1.01128 1.03414 0.92141 1.18757 0.95087 0.96936 0.87983 0.94479 0.94241 0.93202 0.90130 0.94394 0.92291 0.75878 0.89579 0.89365 0.86756 0.86649 0.82014 0.82248 0.90189 0.92259 0.89031 0.86842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 8.51 71.98 0.61 -4.71 16 2 C -0.12 -5.95 5.45 30.59 0.17 -5.78 16 3 C 0.28 14.15 2.24 44.25 0.10 14.24 16 4 H 0.02 0.99 7.58 -2.39 -0.02 0.97 16 5 C -0.56 -29.65 8.73 25.60 0.22 -29.43 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 1.22 5.29 84.65 0.45 1.67 16 8 N -0.91 -50.50 11.29 21.45 0.24 -50.26 16 9 Si 0.97 42.17 29.54 68.60 2.03 44.20 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 13 N -0.67 -29.78 5.01 -447.53 -2.24 -32.02 16 14 C 0.50 20.72 6.42 87.24 0.56 21.28 16 15 O -0.53 -22.96 11.19 -3.29 -0.04 -23.00 16 16 C 0.51 19.46 7.85 87.24 0.69 20.14 16 17 O -0.53 -21.33 14.64 -3.32 -0.05 -21.38 16 18 N -0.53 -17.10 3.12 -631.14 -1.97 -19.07 16 19 C 0.10 2.67 5.67 86.63 0.49 3.16 16 20 C -0.08 -1.36 6.94 30.26 0.21 -1.15 16 21 C -0.14 -2.95 6.23 -19.63 -0.12 -3.08 16 22 C -0.07 -1.16 10.04 22.25 0.22 -0.94 16 23 C -0.13 -2.11 9.71 22.29 0.22 -1.89 16 24 C -0.07 -1.51 5.87 -19.94 -0.12 -1.63 16 25 C -0.11 -1.73 10.00 71.24 0.71 -1.02 16 26 C -0.16 -4.47 9.10 22.52 0.20 -4.26 16 27 C 0.11 3.10 6.62 38.34 0.25 3.35 16 28 H 0.04 1.54 5.65 -2.39 -0.01 1.53 16 29 H 0.04 1.76 7.85 -2.39 -0.02 1.74 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 4.30 5.95 -2.39 -0.01 4.29 16 32 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 34 H 0.41 17.12 8.01 -92.71 -0.74 16.38 16 35 H 0.09 2.34 7.63 -2.39 -0.02 2.32 16 36 H 0.09 2.36 7.62 -2.39 -0.02 2.34 16 37 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.16 1.39 8.06 -2.92 -0.02 1.36 16 40 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 41 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.06 1.02 8.08 -2.39 -0.02 1.00 16 43 H 0.09 0.96 8.08 -2.39 -0.02 0.94 16 44 H 0.11 3.77 6.27 -2.91 -0.02 3.76 16 Total: -1.00 -65.35 356.36 3.12 -62.23 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 0.28 Total: 29.34 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 4.87 Total: 9.96 kcal Atomic # 7 Polarization: -97.37 SS G_CDS: -3.97 Total: -101.35 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -0.09 Total: -44.38 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -65.35 3.12 -62.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128213057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.116 kcal (2) G-P(sol) polarization free energy of solvation -65.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds