Wall clock time and date at job start Tue Mar 31 2020 11:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47045 * 2 1 4 4 H 1.09004 * 109.46968 * 55.00352 * 3 2 1 5 5 C 1.50701 * 109.47055 * 174.99977 * 3 2 1 6 6 H 1.07993 * 120.00389 * 120.27464 * 5 3 2 7 7 C 1.37885 * 119.99660 * 299.99917 * 5 3 2 8 8 N 1.31505 * 120.00324 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99479 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47303 * 60.00398 * 9 7 5 11 11 H 1.48506 * 109.46894 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47336 * 300.00187 * 9 7 5 13 13 N 1.46497 * 109.47353 * 295.00162 * 3 2 1 14 14 C 1.34774 * 120.00257 * 84.99627 * 13 3 2 15 15 O 1.21592 * 119.99935 * 0.02562 * 14 13 3 16 16 N 1.34773 * 119.99898 * 179.97438 * 14 13 3 17 17 C 1.39982 * 119.99719 * 174.69155 * 16 14 13 18 18 C 1.39033 * 120.09736 * 146.86469 * 17 16 14 19 19 C 1.38106 * 120.41710 * 180.09536 * 18 17 16 20 20 C 1.38379 * 120.47210 * 359.90270 * 19 18 17 21 21 C 1.39617 * 119.36551 * 359.93611 * 20 19 18 22 22 C 1.38534 * 120.10569 * 326.59542 * 17 16 14 23 23 C 1.47616 * 120.10816 * 180.34541 * 21 20 19 24 24 O 1.21248 * 121.17495 * 168.59445 * 23 21 20 25 25 C 1.51474 * 117.65358 * 348.61245 * 23 21 20 26 26 C 1.53442 * 107.36997 * 42.48703 * 25 23 21 27 27 C 1.50443 * 119.05237 * 179.75103 * 20 19 18 28 28 H 1.08999 * 109.47196 * 59.99549 * 1 2 3 29 29 H 1.08998 * 109.47087 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47205 * 299.99893 * 1 2 3 31 31 H 1.08998 * 109.46773 * 239.99874 * 2 1 3 32 32 H 1.09000 * 109.47132 * 119.99899 * 2 1 3 33 33 H 0.96996 * 120.00214 * 180.02562 * 8 7 5 34 34 H 0.97002 * 119.99486 * 265.00456 * 13 3 2 35 35 H 0.97000 * 120.00053 * 354.70145 * 16 14 13 36 36 H 1.08004 * 119.79032 * 0.08196 * 18 17 16 37 37 H 1.07997 * 119.77047 * 179.87933 * 19 18 17 38 38 H 1.08009 * 120.13968 * 0.05594 * 22 17 16 39 39 H 1.09002 * 109.87678 * 283.02302 * 25 23 21 40 40 H 1.08997 * 109.87667 * 161.95202 * 25 23 21 41 41 H 1.08998 * 109.48853 * 176.01778 * 26 25 23 42 42 H 1.09005 * 109.50426 * 55.96441 * 26 25 23 43 43 H 1.08999 * 109.12209 * 277.96600 * 27 20 19 44 44 H 1.09003 * 109.11917 * 37.10780 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8928 -0.6501 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8800 1.3812 10 1 6.5005 2.2799 1.3809 11 1 6.3979 0.2156 2.6499 12 1 6.5967 0.1452 0.2343 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3669 15 8 -0.3413 2.6325 -0.4317 16 7 0.0788 3.2674 -2.5184 17 6 -1.2225 3.7580 -2.6779 18 6 -1.4489 4.8990 -3.4393 19 6 -2.7298 5.3899 -3.5995 20 6 -3.8051 4.7520 -3.0064 21 6 -3.5841 3.6038 -2.2435 22 6 -2.2892 3.1049 -2.0824 23 6 -4.7201 2.9059 -1.6097 24 8 -4.5857 1.8053 -1.1189 25 6 -6.0596 3.6129 -1.5946 26 6 -6.2559 4.2518 -2.9758 27 6 -5.1861 5.3174 -3.1973 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8292 -0.0612 2.9498 34 1 2.2720 2.1231 -1.9977 35 1 0.7241 3.3614 -3.2365 36 1 -0.6179 5.4049 -3.9083 37 1 -2.8936 6.2781 -4.1916 38 1 -2.1200 2.2160 -1.4925 39 1 -6.0624 4.3851 -0.8253 40 1 -6.8560 2.8939 -1.4023 41 1 -7.2430 4.7114 -3.0269 42 1 -6.1712 3.4857 -3.7466 43 1 -5.3400 6.1308 -2.4881 44 1 -5.2755 5.7066 -4.2116 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156164059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:13 Heat of formation + Delta-G solvation = -52.588879 kcal Electronic energy + Delta-G solvation = -26322.863458 eV Core-core repulsion = 22625.548881 eV Total energy + Delta-G solvation = -3697.314577 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.70867 -39.62956 -38.07097 -36.21873 -35.01032 -33.81915 -32.39740 -31.27973 -30.85890 -29.64542 -27.76872 -26.74732 -23.82112 -23.29945 -22.73437 -21.65432 -20.73406 -19.54556 -19.24302 -18.21522 -17.35856 -16.29986 -16.04538 -15.68864 -15.38114 -15.11090 -14.81963 -14.71833 -14.41248 -14.17329 -13.82503 -13.55264 -13.48736 -13.22683 -12.94596 -12.63714 -12.43788 -12.00656 -11.87644 -11.55432 -11.45489 -11.33500 -11.23730 -11.06456 -10.98897 -10.83023 -10.34275 -10.19145 -9.97516 -9.61856 -9.57956 -9.39131 -9.05597 -8.93859 -8.50658 -8.03761 -7.70487 -6.12619 -4.22422 0.69102 1.36088 2.39341 3.11595 3.24939 3.30671 3.32182 3.58963 3.95964 4.01214 4.31616 4.43759 4.50902 4.69472 4.85705 4.90735 4.95713 5.11971 5.18842 5.20533 5.33233 5.40160 5.48082 5.54804 5.66016 5.82322 5.84304 5.90808 6.24122 6.33281 6.39275 6.45019 6.51971 6.58533 6.70316 7.01112 7.09322 7.15439 7.35661 7.39007 7.45318 7.54216 7.63942 7.86580 7.97174 8.18902 8.71666 8.82756 9.22635 9.45616 10.92682 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.025337 B = 0.003011 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.830208 B = 9295.914057 C =10114.225967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.286 3.714 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.717 5.717 14 C 0.690 3.310 15 O -0.572 6.572 16 N -0.697 5.697 17 C 0.170 3.830 18 C -0.124 4.124 19 C -0.114 4.114 20 C -0.064 4.064 21 C -0.150 4.150 22 C -0.063 4.063 23 C 0.396 3.604 24 O -0.445 6.445 25 C -0.164 4.164 26 C -0.113 4.113 27 C -0.082 4.082 28 H 0.037 0.963 29 H 0.022 0.978 30 H 0.050 0.950 31 H 0.030 0.970 32 H 0.100 0.900 33 H 0.266 0.734 34 H 0.386 0.614 35 H 0.403 0.597 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.151 0.849 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.049 10.575 -14.230 23.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.185 3.815 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.368 5.368 14 C 0.391 3.609 15 O -0.449 6.449 16 N -0.345 5.345 17 C 0.073 3.927 18 C -0.145 4.145 19 C -0.132 4.132 20 C -0.066 4.066 21 C -0.152 4.152 22 C -0.084 4.084 23 C 0.273 3.727 24 O -0.319 6.319 25 C -0.201 4.201 26 C -0.150 4.150 27 C -0.119 4.119 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.118 0.882 33 H 0.076 0.924 34 H 0.218 0.782 35 H 0.238 0.762 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.169 0.831 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.557 9.761 -12.825 22.400 hybrid contribution 1.834 0.159 -0.614 1.941 sum -13.723 9.919 -13.439 21.617 Atomic orbital electron populations 1.21818 0.98158 0.98072 1.01234 1.21959 0.92731 0.99771 1.02245 1.18734 0.93997 0.88931 0.79874 0.93205 1.21175 0.90622 1.39192 1.06470 0.92160 1.24877 0.98609 0.94796 0.95341 1.69881 1.35245 1.37364 1.09296 0.86505 0.84807 0.78275 0.77471 1.20218 1.21103 1.20175 1.45842 1.13356 1.58195 1.19387 1.16144 0.83848 0.78890 0.82048 1.90935 1.51945 1.64105 1.37953 1.42900 1.11292 1.62368 1.17989 1.17433 0.84119 0.93046 0.98102 1.21025 0.97819 0.94338 1.01338 1.20754 0.91419 1.00125 1.00946 1.19903 0.95547 0.94229 0.96909 1.20124 0.94506 0.97880 1.02655 1.21560 0.89738 0.99615 0.97457 1.22732 0.89589 0.85615 0.74752 1.90573 1.85962 1.19603 1.35803 1.22309 0.96421 1.01845 0.99542 1.21491 0.99181 0.98375 0.96002 1.20418 0.90493 0.98180 1.02764 0.94426 0.95861 0.93104 0.95077 0.88222 0.92439 0.78220 0.76219 0.85445 0.85387 0.83148 0.88028 0.88919 0.90331 0.91214 0.90023 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.51 37.16 0.32 -2.86 16 2 C -0.13 -3.17 5.45 -26.73 -0.15 -3.31 16 3 C 0.29 7.21 2.24 -69.08 -0.15 7.05 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.54 -14.06 8.73 -34.44 -0.30 -14.36 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.74 11.29 55.43 0.63 -24.11 16 9 Si 0.90 20.55 29.54 -169.99 -5.02 15.52 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 N -0.72 -14.70 5.03 -59.81 -0.30 -15.01 16 14 C 0.69 13.85 6.87 -86.92 -0.60 13.25 16 15 O -0.57 -13.66 11.18 5.28 0.06 -13.60 16 16 N -0.70 -10.60 5.35 -14.25 -0.08 -10.67 16 17 C 0.17 2.52 6.28 -83.73 -0.53 2.00 16 18 C -0.12 -1.40 9.94 -39.34 -0.39 -1.79 16 19 C -0.11 -1.12 9.64 -39.58 -0.38 -1.50 16 20 C -0.06 -0.69 5.78 -104.18 -0.60 -1.29 16 21 C -0.15 -2.13 5.82 -105.01 -0.61 -2.74 16 22 C -0.06 -1.07 8.21 -38.92 -0.32 -1.39 16 23 C 0.40 5.60 6.89 -30.10 -0.21 5.39 16 24 O -0.45 -8.12 17.26 5.59 0.10 -8.02 16 25 C -0.16 -1.49 6.19 -27.27 -0.17 -1.66 16 26 C -0.11 -0.77 5.90 -26.70 -0.16 -0.93 16 27 C -0.08 -0.57 5.70 -28.20 -0.16 -0.73 16 28 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 1.27 7.84 -51.93 -0.41 0.87 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 2.71 5.95 -51.93 -0.31 2.41 16 33 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.39 6.73 8.56 -40.82 -0.35 6.38 16 35 H 0.40 4.60 8.83 -40.82 -0.36 4.24 16 36 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 37 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 38 H 0.15 3.10 6.08 -52.48 -0.32 2.78 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.42 8.11 -51.93 -0.42 -0.01 16 LS Contribution 356.14 15.07 5.37 5.37 Total: -1.00 -32.96 356.14 -9.95 -42.91 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -6.20 Total: 10.75 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -4.50 Total: -3.13 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.25 Total: -49.79 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: 0.16 Total: -21.63 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.96 -9.95 -42.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156164059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.683 kcal (2) G-P(sol) polarization free energy of solvation -32.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds