Wall clock time and date at job start Tue Mar 31 2020 11:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47045 * 2 1 4 4 H 1.09004 * 109.46968 * 55.00352 * 3 2 1 5 5 C 1.50701 * 109.47055 * 174.99977 * 3 2 1 6 6 H 1.07993 * 120.00389 * 120.27464 * 5 3 2 7 7 C 1.37885 * 119.99660 * 299.99917 * 5 3 2 8 8 N 1.31505 * 120.00324 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99479 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47303 * 60.00398 * 9 7 5 11 11 H 1.48506 * 109.46894 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47336 * 300.00187 * 9 7 5 13 13 N 1.46497 * 109.47353 * 295.00162 * 3 2 1 14 14 C 1.34774 * 120.00257 * 84.99627 * 13 3 2 15 15 O 1.21592 * 119.99935 * 0.02562 * 14 13 3 16 16 N 1.34773 * 119.99898 * 179.97438 * 14 13 3 17 17 C 1.39982 * 119.99719 * 174.69155 * 16 14 13 18 18 C 1.39033 * 120.09736 * 146.86469 * 17 16 14 19 19 C 1.38106 * 120.41710 * 180.09536 * 18 17 16 20 20 C 1.38379 * 120.47210 * 359.90270 * 19 18 17 21 21 C 1.39617 * 119.36551 * 359.93611 * 20 19 18 22 22 C 1.38534 * 120.10569 * 326.59542 * 17 16 14 23 23 C 1.47616 * 120.10816 * 180.34541 * 21 20 19 24 24 O 1.21248 * 121.17495 * 168.59445 * 23 21 20 25 25 C 1.51474 * 117.65358 * 348.61245 * 23 21 20 26 26 C 1.53442 * 107.36997 * 42.48703 * 25 23 21 27 27 C 1.50443 * 119.05237 * 179.75103 * 20 19 18 28 28 H 1.08999 * 109.47196 * 59.99549 * 1 2 3 29 29 H 1.08998 * 109.47087 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47205 * 299.99893 * 1 2 3 31 31 H 1.08998 * 109.46773 * 239.99874 * 2 1 3 32 32 H 1.09000 * 109.47132 * 119.99899 * 2 1 3 33 33 H 0.96996 * 120.00214 * 180.02562 * 8 7 5 34 34 H 0.97002 * 119.99486 * 265.00456 * 13 3 2 35 35 H 0.97000 * 120.00053 * 354.70145 * 16 14 13 36 36 H 1.08004 * 119.79032 * 0.08196 * 18 17 16 37 37 H 1.07997 * 119.77047 * 179.87933 * 19 18 17 38 38 H 1.08009 * 120.13968 * 0.05594 * 22 17 16 39 39 H 1.09002 * 109.87678 * 283.02302 * 25 23 21 40 40 H 1.08997 * 109.87667 * 161.95202 * 25 23 21 41 41 H 1.08998 * 109.48853 * 176.01778 * 26 25 23 42 42 H 1.09005 * 109.50426 * 55.96441 * 26 25 23 43 43 H 1.08999 * 109.12209 * 277.96600 * 27 20 19 44 44 H 1.09003 * 109.11917 * 37.10780 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8928 -0.6501 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8800 1.3812 10 1 6.5005 2.2799 1.3809 11 1 6.3979 0.2156 2.6499 12 1 6.5967 0.1452 0.2343 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3669 15 8 -0.3413 2.6325 -0.4317 16 7 0.0788 3.2674 -2.5184 17 6 -1.2225 3.7580 -2.6779 18 6 -1.4489 4.8990 -3.4393 19 6 -2.7298 5.3899 -3.5995 20 6 -3.8051 4.7520 -3.0064 21 6 -3.5841 3.6038 -2.2435 22 6 -2.2892 3.1049 -2.0824 23 6 -4.7201 2.9059 -1.6097 24 8 -4.5857 1.8053 -1.1189 25 6 -6.0596 3.6129 -1.5946 26 6 -6.2559 4.2518 -2.9758 27 6 -5.1861 5.3174 -3.1973 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8292 -0.0612 2.9498 34 1 2.2720 2.1231 -1.9977 35 1 0.7241 3.3614 -3.2365 36 1 -0.6179 5.4049 -3.9083 37 1 -2.8936 6.2781 -4.1916 38 1 -2.1200 2.2160 -1.4925 39 1 -6.0624 4.3851 -0.8253 40 1 -6.8560 2.8939 -1.4023 41 1 -7.2430 4.7114 -3.0269 42 1 -6.1712 3.4857 -3.7466 43 1 -5.3400 6.1308 -2.4881 44 1 -5.2755 5.7066 -4.2116 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156164059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:12 Heat of formation + Delta-G solvation = -74.939123 kcal Electronic energy + Delta-G solvation = -26323.832638 eV Core-core repulsion = 22625.548881 eV Total energy + Delta-G solvation = -3698.283757 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.88154 -40.97535 -39.27161 -37.52396 -36.52333 -35.09231 -34.26632 -32.80601 -32.17453 -30.67139 -29.08972 -28.31422 -25.28472 -24.60076 -23.93081 -22.64744 -22.20812 -21.38496 -20.27188 -19.81055 -18.59135 -17.89653 -17.25430 -17.08367 -16.62751 -16.50928 -16.29431 -15.85306 -15.69335 -15.41528 -15.19893 -14.74814 -14.60717 -14.50855 -14.08078 -14.01307 -13.74229 -13.56296 -13.21749 -13.18614 -12.91607 -12.78599 -12.67040 -12.26150 -12.24588 -12.10885 -11.98465 -11.77220 -11.63650 -11.22049 -11.09852 -10.99138 -10.60758 -10.55371 -9.96630 -9.75807 -8.92209 -8.17422 -6.35551 -0.32697 0.34438 1.36306 1.43946 1.46545 1.54191 1.75976 2.18699 2.41360 2.82704 3.02978 3.12041 3.46322 3.74496 3.80103 3.96335 4.11077 4.18779 4.24481 4.36814 4.42248 4.49235 4.57066 4.63987 4.68837 4.80813 4.83451 4.96463 5.00791 5.07190 5.15942 5.17255 5.30057 5.32886 5.35148 5.38588 5.48594 5.48900 5.56091 5.59318 5.71291 5.82891 6.01322 6.12622 6.25547 6.49885 6.72276 7.22447 7.33150 7.68566 8.88209 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.025337 B = 0.003011 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.830208 B = 9295.914057 C =10114.225967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.119 4.119 3 C 0.297 3.703 4 H -0.004 1.004 5 C -0.549 4.549 6 H 0.075 0.925 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.974 3.026 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.263 1.263 13 N -0.713 5.713 14 C 0.689 3.311 15 O -0.616 6.616 16 N -0.678 5.678 17 C 0.137 3.863 18 C -0.106 4.106 19 C -0.104 4.104 20 C -0.046 4.046 21 C -0.179 4.179 22 C -0.100 4.100 23 C 0.386 3.614 24 O -0.509 6.509 25 C -0.157 4.157 26 C -0.108 4.108 27 C -0.082 4.082 28 H 0.036 0.964 29 H 0.040 0.960 30 H 0.021 0.979 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.265 0.735 34 H 0.403 0.597 35 H 0.422 0.578 36 H 0.163 0.837 37 H 0.179 0.821 38 H 0.096 0.904 39 H 0.119 0.881 40 H 0.097 0.903 41 H 0.114 0.886 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.572 13.987 -17.657 27.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.158 4.158 3 C 0.194 3.806 4 H 0.014 0.986 5 C -0.587 4.587 6 H 0.093 0.907 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.798 3.202 10 H -0.195 1.195 11 H -0.213 1.213 12 H -0.188 1.188 13 N -0.366 5.366 14 C 0.389 3.611 15 O -0.496 6.496 16 N -0.328 5.328 17 C 0.042 3.958 18 C -0.127 4.127 19 C -0.122 4.122 20 C -0.047 4.047 21 C -0.180 4.180 22 C -0.121 4.121 23 C 0.267 3.733 24 O -0.388 6.388 25 C -0.194 4.194 26 C -0.145 4.145 27 C -0.118 4.118 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.040 0.960 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.238 0.762 35 H 0.261 0.739 36 H 0.180 0.820 37 H 0.196 0.804 38 H 0.114 0.886 39 H 0.137 0.863 40 H 0.115 0.885 41 H 0.133 0.867 42 H 0.081 0.919 43 H 0.122 0.878 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -16.090 13.225 -16.349 26.478 hybrid contribution 1.859 -0.801 0.397 2.063 sum -14.231 12.424 -15.951 24.725 Atomic orbital electron populations 1.21633 0.97529 0.98656 0.99824 1.21808 0.93071 0.99563 1.01399 1.18255 0.93651 0.88566 0.80157 0.98574 1.21526 0.91050 1.39102 1.06992 0.90699 1.25814 1.03560 0.94288 0.94909 1.70052 1.37303 1.38207 1.09867 0.85373 0.78725 0.78501 0.77565 1.19513 1.21285 1.18801 1.45421 1.14161 1.58427 1.18583 1.16264 0.83046 0.78848 0.82902 1.90920 1.53055 1.65541 1.40121 1.42496 1.12180 1.61360 1.16770 1.17688 0.82897 0.95007 1.00242 1.21445 0.99962 0.92240 0.99035 1.21365 0.90074 1.00863 0.99944 1.20462 0.98420 0.91852 0.93964 1.20357 0.93342 0.99842 1.04486 1.21315 0.92383 0.99243 0.99132 1.23707 0.91898 0.84857 0.72823 1.90540 1.87125 1.22403 1.38685 1.22388 0.92961 1.01967 1.02132 1.21552 1.01151 0.98256 0.93584 1.20622 0.87490 0.98323 1.05412 0.94449 0.94056 0.95957 0.93919 0.90747 0.92546 0.76207 0.73912 0.81972 0.80397 0.88613 0.86277 0.88479 0.86731 0.91877 0.87808 0.86708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.00 8.51 71.98 0.61 -5.39 16 2 C -0.12 -6.22 5.45 30.60 0.17 -6.05 16 3 C 0.30 15.78 2.24 44.25 0.10 15.87 16 4 H 0.00 -0.23 7.58 -2.38 -0.02 -0.25 16 5 C -0.55 -29.30 8.73 25.60 0.22 -29.08 16 6 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 7 C 0.01 0.79 5.29 84.66 0.45 1.24 16 8 N -0.92 -53.52 11.29 21.45 0.24 -53.28 16 9 Si 0.97 42.33 29.54 68.60 2.03 44.36 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 12 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 13 N -0.71 -30.41 5.03 -461.41 -2.32 -32.73 16 14 C 0.69 29.26 6.87 179.06 1.23 30.49 16 15 O -0.62 -32.14 11.18 -4.01 -0.04 -32.19 16 16 N -0.68 -21.00 5.35 -317.28 -1.70 -22.70 16 17 C 0.14 4.11 6.28 38.10 0.24 4.35 16 18 C -0.11 -2.06 9.94 22.43 0.22 -1.83 16 19 C -0.10 -1.54 9.64 22.27 0.21 -1.32 16 20 C -0.05 -0.83 5.78 -19.58 -0.11 -0.94 16 21 C -0.18 -5.20 5.82 -20.11 -0.12 -5.32 16 22 C -0.10 -3.65 8.21 22.69 0.19 -3.46 16 23 C 0.39 11.60 6.89 28.41 0.20 11.79 16 24 O -0.51 -20.75 17.26 -2.93 -0.05 -20.80 16 25 C -0.16 -2.67 6.19 30.24 0.19 -2.48 16 26 C -0.11 -1.05 5.90 30.62 0.18 -0.87 16 27 C -0.08 -0.71 5.70 29.64 0.17 -0.54 16 28 H 0.04 1.86 5.64 -2.39 -0.01 1.84 16 29 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.02 1.20 7.84 -2.39 -0.02 1.18 16 31 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.07 4.29 5.95 -2.39 -0.01 4.27 16 33 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 34 H 0.40 14.11 8.56 -92.71 -0.79 13.32 16 35 H 0.42 9.26 8.83 -92.71 -0.82 8.44 16 36 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 37 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 38 H 0.10 4.53 6.08 -2.91 -0.02 4.51 16 39 H 0.12 1.62 8.14 -2.39 -0.02 1.61 16 40 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.11 0.34 8.11 -2.39 -0.02 0.32 16 Total: -1.00 -82.29 356.14 1.73 -80.55 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: -0.57 Total: 30.33 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 4.15 Total: 6.46 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -3.77 Total: -108.71 kcal Atomic # 8 Polarization: -52.90 SS G_CDS: -0.10 Total: -52.99 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -82.29 1.73 -80.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156164059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.616 kcal (2) G-P(sol) polarization free energy of solvation -82.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds