Wall clock time and date at job start Tue Mar 31 2020 11:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46921 * 2 1 4 4 H 1.09004 * 109.47204 * 305.78778 * 3 2 1 5 5 C 1.50696 * 109.46956 * 185.78955 * 3 2 1 6 6 H 1.08005 * 120.00299 * 245.26381 * 5 3 2 7 7 C 1.37882 * 119.99971 * 65.26803 * 5 3 2 8 8 N 1.31520 * 119.99802 * 186.13053 * 7 5 3 9 9 Si 1.86794 * 120.00007 * 6.12732 * 7 5 3 10 10 H 1.48492 * 109.47468 * 270.00205 * 9 7 5 11 11 H 1.48503 * 109.47130 * 30.00479 * 9 7 5 12 12 H 1.48509 * 109.47023 * 150.00369 * 9 7 5 13 13 N 1.46497 * 109.47387 * 65.79104 * 3 2 1 14 14 C 1.34784 * 119.99937 * 275.00101 * 13 3 2 15 15 O 1.21586 * 119.99885 * 359.97438 * 14 13 3 16 16 N 1.34767 * 120.00058 * 179.97438 * 14 13 3 17 17 C 1.39982 * 120.00169 * 184.88165 * 16 14 13 18 18 C 1.39023 * 120.09998 * 144.49200 * 17 16 14 19 19 C 1.38119 * 120.41354 * 180.09616 * 18 17 16 20 20 C 1.38365 * 120.46970 * 359.89907 * 19 18 17 21 21 C 1.39616 * 119.37319 * 359.93730 * 20 19 18 22 22 C 1.38536 * 120.09820 * 324.21827 * 17 16 14 23 23 C 1.47617 * 120.10680 * 180.34522 * 21 20 19 24 24 O 1.21253 * 121.16830 * 168.59769 * 23 21 20 25 25 C 1.51469 * 117.65738 * 348.61161 * 23 21 20 26 26 C 1.53444 * 107.36817 * 42.48996 * 25 23 21 27 27 C 1.50450 * 119.04720 * 179.75281 * 20 19 18 28 28 H 1.08996 * 109.46993 * 60.00330 * 1 2 3 29 29 H 1.09001 * 109.46859 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47173 * 299.99793 * 1 2 3 31 31 H 1.09002 * 109.46983 * 239.99695 * 2 1 3 32 32 H 1.08996 * 109.46993 * 119.99670 * 2 1 3 33 33 H 0.97001 * 119.99788 * 354.97345 * 8 7 5 34 34 H 0.96995 * 120.00395 * 94.99704 * 13 3 2 35 35 H 0.97001 * 120.00115 * 4.88134 * 16 14 13 36 36 H 1.08002 * 119.79658 * 0.07546 * 18 17 16 37 37 H 1.08005 * 119.76412 * 179.87898 * 19 18 17 38 38 H 1.08004 * 120.14613 * 0.05930 * 22 17 16 39 39 H 1.08998 * 109.87624 * 283.02107 * 25 23 21 40 40 H 1.09001 * 109.87263 * 161.95366 * 25 23 21 41 41 H 1.09000 * 109.48674 * 176.01506 * 26 25 23 42 42 H 1.08997 * 109.50872 * 55.96747 * 26 25 23 43 43 H 1.09000 * 109.12268 * 277.96246 * 27 20 19 44 44 H 1.09002 * 109.11977 * 37.10699 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5945 1.9854 -0.8337 5 6 3.5401 1.4449 -0.1433 6 1 4.1592 1.8084 0.6636 7 6 4.1224 0.9832 -1.3047 8 7 5.4305 0.8719 -1.3853 9 14 3.0536 0.5157 -2.7636 10 1 2.6884 -0.9206 -2.6696 11 1 1.8196 1.3417 -2.7580 12 1 3.8033 0.7543 -4.0231 13 7 1.6688 2.0917 1.2597 14 6 0.4530 2.6581 1.3933 15 8 -0.3354 2.6305 0.4681 16 7 0.1113 3.2549 2.5523 17 6 -1.1852 3.7526 2.7276 18 6 -1.7960 3.6833 3.9746 19 6 -3.0758 4.1706 4.1544 20 6 -3.7662 4.7360 3.0970 21 6 -3.1567 4.8115 1.8432 22 6 -1.8614 4.3210 1.6604 23 6 -3.8756 5.4185 0.7057 24 8 -3.3031 5.6811 -0.3304 25 6 -5.3534 5.7019 0.8786 26 6 -5.5453 6.2940 2.2811 27 6 -5.1607 5.2517 3.3275 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.9895 1.1826 -0.6560 34 1 2.2978 2.1140 1.9977 35 1 0.7638 3.3395 3.2650 36 1 -1.2666 3.2453 4.8079 37 1 -3.5410 4.1096 5.1272 38 1 -1.3909 4.3809 0.6901 39 1 -5.9216 4.7764 0.7860 40 1 -5.6840 6.4176 0.1258 41 1 -6.5891 6.5772 2.4165 42 1 -4.9122 7.1739 2.3945 43 1 -5.8622 4.4190 3.2766 44 1 -5.2149 5.7042 4.3177 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156164180.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:17 Heat of formation + Delta-G solvation = -52.075405 kcal Electronic energy + Delta-G solvation = -26363.777520 eV Core-core repulsion = 22666.485209 eV Total energy + Delta-G solvation = -3697.292312 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.79929 -39.76778 -38.17383 -36.37101 -35.20421 -33.94286 -32.46430 -31.53924 -31.19547 -29.75901 -27.90358 -26.95308 -23.83217 -23.23082 -22.31949 -21.76592 -20.98435 -19.79309 -19.32121 -18.53943 -17.51518 -16.96761 -16.34080 -15.80431 -15.55017 -15.20894 -14.89934 -14.82330 -14.48951 -14.07503 -13.82298 -13.63357 -13.42160 -13.25998 -13.10585 -12.71097 -12.58237 -12.35834 -12.14947 -11.95986 -11.83722 -11.52224 -11.40145 -11.13987 -10.93814 -10.71016 -10.47610 -10.15594 -9.79242 -9.68039 -9.66316 -9.52280 -9.02199 -8.89188 -8.55484 -8.24702 -7.89837 -6.57492 -4.25602 0.61515 1.28180 2.32117 2.98899 3.36408 3.47359 3.48309 3.60823 3.82129 3.92512 4.37330 4.40535 4.44952 4.63780 4.73745 4.79259 4.87379 5.05131 5.14033 5.18607 5.27039 5.33102 5.41922 5.49563 5.59167 5.75679 5.78239 5.84395 6.03254 6.07183 6.16840 6.21488 6.27408 6.33387 6.50041 6.65569 6.74948 6.86109 6.97622 7.03126 7.12970 7.35697 7.45040 7.47781 7.71634 8.21419 8.55869 8.70448 9.06844 9.45059 10.83287 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.021617 B = 0.003252 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.990382 B = 8606.944887 C = 9239.021254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.257 3.743 4 H 0.051 0.949 5 C -0.610 4.610 6 H 0.062 0.938 7 C 0.037 3.963 8 N -0.904 5.904 9 Si 1.047 2.953 10 H -0.280 1.280 11 H -0.272 1.272 12 H -0.287 1.287 13 N -0.710 5.710 14 C 0.692 3.308 15 O -0.575 6.575 16 N -0.696 5.696 17 C 0.163 3.837 18 C -0.120 4.120 19 C -0.116 4.116 20 C -0.061 4.061 21 C -0.152 4.152 22 C -0.061 4.061 23 C 0.397 3.603 24 O -0.446 6.446 25 C -0.163 4.163 26 C -0.113 4.113 27 C -0.082 4.082 28 H 0.052 0.948 29 H 0.030 0.970 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.268 0.732 34 H 0.390 0.610 35 H 0.404 0.596 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.155 0.845 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.914 8.051 14.219 26.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C 0.154 3.846 4 H 0.068 0.932 5 C -0.648 4.648 6 H 0.080 0.920 7 C -0.169 4.169 8 N -0.538 5.538 9 Si 0.876 3.124 10 H -0.207 1.207 11 H -0.197 1.197 12 H -0.213 1.213 13 N -0.361 5.361 14 C 0.392 3.608 15 O -0.452 6.452 16 N -0.344 5.344 17 C 0.067 3.933 18 C -0.142 4.142 19 C -0.134 4.134 20 C -0.062 4.062 21 C -0.154 4.154 22 C -0.082 4.082 23 C 0.273 3.727 24 O -0.320 6.320 25 C -0.201 4.201 26 C -0.151 4.151 27 C -0.119 4.119 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.223 0.777 35 H 0.239 0.761 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.172 0.828 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.149 7.454 11.208 25.069 hybrid contribution 0.803 0.454 2.531 2.694 sum -20.346 7.908 13.739 25.793 Atomic orbital electron populations 1.21876 0.97068 0.98863 1.02262 1.22267 0.94098 0.99934 1.01297 1.19196 0.95801 0.88302 0.81331 0.93167 1.22162 0.89649 1.48704 1.04274 0.92015 1.25699 0.97555 0.93624 1.00032 1.70842 1.04065 1.42591 1.36273 0.83965 0.75411 0.77216 0.75815 1.20674 1.19716 1.21347 1.45540 1.13114 1.58567 1.18912 1.16134 0.83703 0.78702 0.82216 1.90912 1.50961 1.64577 1.38764 1.42790 1.11551 1.61763 1.18326 1.17429 0.85520 0.96232 0.94079 1.21060 0.95396 1.01194 0.96501 1.20766 0.94123 0.99885 0.98648 1.19932 0.95736 0.98183 0.92372 1.20153 0.95713 1.04666 0.94845 1.21695 0.93241 0.92707 1.00514 1.22735 0.90479 0.73870 0.85582 1.90574 1.71216 1.41338 1.28851 1.22310 0.94949 1.03609 0.99249 1.21492 1.02427 0.98470 0.92682 1.20432 0.92890 0.98841 0.99767 0.92843 0.95083 0.93159 0.92184 0.92795 0.92153 0.77741 0.76072 0.85426 0.85325 0.82769 0.88028 0.88883 0.90282 0.91183 0.89972 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.53 37.16 0.32 -2.64 16 2 C -0.14 -3.06 5.20 -26.73 -0.14 -3.20 16 3 C 0.26 6.14 1.81 -69.09 -0.12 6.02 16 4 H 0.05 1.33 6.06 -51.93 -0.31 1.02 16 5 C -0.61 -16.43 9.09 -34.44 -0.31 -16.74 16 6 H 0.06 1.73 7.95 -52.48 -0.42 1.31 16 7 C 0.04 1.04 5.43 -17.82 -0.10 0.94 16 8 N -0.90 -27.13 13.70 55.43 0.76 -26.37 16 9 Si 1.05 25.71 25.36 -169.99 -4.31 21.40 16 10 H -0.28 -6.50 6.76 56.52 0.38 -6.12 16 11 H -0.27 -6.52 6.36 56.52 0.36 -6.16 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 N -0.71 -14.10 5.03 -59.82 -0.30 -14.40 16 14 C 0.69 13.23 7.01 -86.92 -0.61 12.62 16 15 O -0.57 -12.91 10.96 5.29 0.06 -12.85 16 16 N -0.70 -10.11 5.34 -14.26 -0.08 -10.19 16 17 C 0.16 2.32 6.29 -83.73 -0.53 1.79 16 18 C -0.12 -1.28 9.95 -39.33 -0.39 -1.67 16 19 C -0.12 -1.07 9.64 -39.58 -0.38 -1.45 16 20 C -0.06 -0.61 5.78 -104.18 -0.60 -1.22 16 21 C -0.15 -2.06 5.82 -105.01 -0.61 -2.67 16 22 C -0.06 -0.99 8.25 -38.92 -0.32 -1.31 16 23 C 0.40 5.37 6.89 -30.10 -0.21 5.17 16 24 O -0.45 -7.88 17.26 5.58 0.10 -7.78 16 25 C -0.16 -1.41 6.19 -27.28 -0.17 -1.57 16 26 C -0.11 -0.72 5.90 -26.70 -0.16 -0.88 16 27 C -0.08 -0.54 5.70 -28.20 -0.16 -0.70 16 28 H 0.05 1.16 7.89 -51.93 -0.41 0.75 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 1.04 5.63 -51.93 -0.29 0.74 16 31 H 0.06 1.39 4.43 -51.93 -0.23 1.16 16 32 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.27 7.94 8.72 -40.82 -0.36 7.59 16 34 H 0.39 6.75 8.54 -40.82 -0.35 6.40 16 35 H 0.40 4.45 8.84 -40.82 -0.36 4.09 16 36 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 38 H 0.15 3.07 5.92 -52.48 -0.31 2.76 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.38 8.11 -51.93 -0.42 -0.04 16 LS Contribution 350.52 15.07 5.28 5.28 Total: -1.00 -33.94 350.52 -9.11 -43.05 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -6.12 Total: 9.36 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -4.49 Total: -7.51 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.38 Total: -50.96 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: 0.15 Total: -20.63 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -4.31 Total: 21.40 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.94 -9.11 -43.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156164180.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.026 kcal (2) G-P(sol) polarization free energy of solvation -33.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds