Wall clock time and date at job start Tue Mar 31 2020 11:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46921 * 2 1 4 4 H 1.09004 * 109.47204 * 305.78778 * 3 2 1 5 5 C 1.50696 * 109.46956 * 185.78955 * 3 2 1 6 6 H 1.08005 * 120.00299 * 245.26381 * 5 3 2 7 7 C 1.37882 * 119.99971 * 65.26803 * 5 3 2 8 8 N 1.31520 * 119.99802 * 186.13053 * 7 5 3 9 9 Si 1.86794 * 120.00007 * 6.12732 * 7 5 3 10 10 H 1.48492 * 109.47468 * 270.00205 * 9 7 5 11 11 H 1.48503 * 109.47130 * 30.00479 * 9 7 5 12 12 H 1.48509 * 109.47023 * 150.00369 * 9 7 5 13 13 N 1.46497 * 109.47387 * 65.79104 * 3 2 1 14 14 C 1.34784 * 119.99937 * 275.00101 * 13 3 2 15 15 O 1.21586 * 119.99885 * 359.97438 * 14 13 3 16 16 N 1.34767 * 120.00058 * 179.97438 * 14 13 3 17 17 C 1.39982 * 120.00169 * 184.88165 * 16 14 13 18 18 C 1.39023 * 120.09998 * 144.49200 * 17 16 14 19 19 C 1.38119 * 120.41354 * 180.09616 * 18 17 16 20 20 C 1.38365 * 120.46970 * 359.89907 * 19 18 17 21 21 C 1.39616 * 119.37319 * 359.93730 * 20 19 18 22 22 C 1.38536 * 120.09820 * 324.21827 * 17 16 14 23 23 C 1.47617 * 120.10680 * 180.34522 * 21 20 19 24 24 O 1.21253 * 121.16830 * 168.59769 * 23 21 20 25 25 C 1.51469 * 117.65738 * 348.61161 * 23 21 20 26 26 C 1.53444 * 107.36817 * 42.48996 * 25 23 21 27 27 C 1.50450 * 119.04720 * 179.75281 * 20 19 18 28 28 H 1.08996 * 109.46993 * 60.00330 * 1 2 3 29 29 H 1.09001 * 109.46859 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47173 * 299.99793 * 1 2 3 31 31 H 1.09002 * 109.46983 * 239.99695 * 2 1 3 32 32 H 1.08996 * 109.46993 * 119.99670 * 2 1 3 33 33 H 0.97001 * 119.99788 * 354.97345 * 8 7 5 34 34 H 0.96995 * 120.00395 * 94.99704 * 13 3 2 35 35 H 0.97001 * 120.00115 * 4.88134 * 16 14 13 36 36 H 1.08002 * 119.79658 * 0.07546 * 18 17 16 37 37 H 1.08005 * 119.76412 * 179.87898 * 19 18 17 38 38 H 1.08004 * 120.14613 * 0.05930 * 22 17 16 39 39 H 1.08998 * 109.87624 * 283.02107 * 25 23 21 40 40 H 1.09001 * 109.87263 * 161.95366 * 25 23 21 41 41 H 1.09000 * 109.48674 * 176.01506 * 26 25 23 42 42 H 1.08997 * 109.50872 * 55.96747 * 26 25 23 43 43 H 1.09000 * 109.12268 * 277.96246 * 27 20 19 44 44 H 1.09002 * 109.11977 * 37.10699 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5945 1.9854 -0.8337 5 6 3.5401 1.4449 -0.1433 6 1 4.1592 1.8084 0.6636 7 6 4.1224 0.9832 -1.3047 8 7 5.4305 0.8719 -1.3853 9 14 3.0536 0.5157 -2.7636 10 1 2.6884 -0.9206 -2.6696 11 1 1.8196 1.3417 -2.7580 12 1 3.8033 0.7543 -4.0231 13 7 1.6688 2.0917 1.2597 14 6 0.4530 2.6581 1.3933 15 8 -0.3354 2.6305 0.4681 16 7 0.1113 3.2549 2.5523 17 6 -1.1852 3.7526 2.7276 18 6 -1.7960 3.6833 3.9746 19 6 -3.0758 4.1706 4.1544 20 6 -3.7662 4.7360 3.0970 21 6 -3.1567 4.8115 1.8432 22 6 -1.8614 4.3210 1.6604 23 6 -3.8756 5.4185 0.7057 24 8 -3.3031 5.6811 -0.3304 25 6 -5.3534 5.7019 0.8786 26 6 -5.5453 6.2940 2.2811 27 6 -5.1607 5.2517 3.3275 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.9895 1.1826 -0.6560 34 1 2.2978 2.1140 1.9977 35 1 0.7638 3.3395 3.2650 36 1 -1.2666 3.2453 4.8079 37 1 -3.5410 4.1096 5.1272 38 1 -1.3909 4.3809 0.6901 39 1 -5.9216 4.7764 0.7860 40 1 -5.6840 6.4176 0.1258 41 1 -6.5891 6.5772 2.4165 42 1 -4.9122 7.1739 2.3945 43 1 -5.8622 4.4190 3.2766 44 1 -5.2149 5.7042 4.3177 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156164180.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:16 Heat of formation + Delta-G solvation = -76.237676 kcal Electronic energy + Delta-G solvation = -26364.825275 eV Core-core repulsion = 22666.485209 eV Total energy + Delta-G solvation = -3698.340066 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.92895 -41.03273 -39.31681 -37.66219 -36.58554 -35.13306 -34.48140 -33.11121 -32.20991 -30.70019 -29.26045 -28.35980 -24.90124 -24.37995 -23.92883 -22.73352 -22.29639 -21.51281 -20.32262 -20.24359 -19.02052 -18.36134 -17.41453 -16.99799 -16.65904 -16.60671 -16.13918 -15.88997 -15.61769 -15.40312 -15.10994 -14.80867 -14.63543 -14.56236 -14.32206 -14.26650 -14.05516 -13.78968 -13.65755 -13.17367 -12.84779 -12.77378 -12.53937 -12.37358 -12.24166 -12.01350 -11.79798 -11.75149 -11.58174 -11.28017 -11.01431 -10.92519 -10.71782 -10.61733 -9.98500 -9.92778 -9.00807 -8.81263 -6.51028 -0.34421 0.32166 1.34667 1.37168 1.47710 1.65183 1.67589 2.10475 2.35186 2.78672 2.99021 3.01211 3.33904 3.72898 3.78920 3.95414 4.10117 4.17607 4.22775 4.25029 4.32717 4.34346 4.45385 4.56348 4.62736 4.76612 4.80087 4.85333 4.95626 5.01389 5.05840 5.11671 5.16158 5.21565 5.28659 5.31801 5.34548 5.46944 5.47499 5.54028 5.56090 5.61076 5.95307 5.98890 6.09648 6.47929 6.48961 7.09312 7.23875 7.56875 8.57405 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.021617 B = 0.003252 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.990382 B = 8606.944887 C = 9239.021254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.133 4.133 3 C 0.264 3.736 4 H 0.020 0.980 5 C -0.603 4.603 6 H 0.044 0.956 7 C -0.007 4.007 8 N -0.934 5.934 9 Si 1.077 2.923 10 H -0.253 1.253 11 H -0.272 1.272 12 H -0.286 1.286 13 N -0.711 5.711 14 C 0.692 3.308 15 O -0.611 6.611 16 N -0.679 5.679 17 C 0.133 3.867 18 C -0.103 4.103 19 C -0.106 4.106 20 C -0.043 4.043 21 C -0.179 4.179 22 C -0.097 4.097 23 C 0.387 3.613 24 O -0.509 6.509 25 C -0.157 4.157 26 C -0.109 4.109 27 C -0.083 4.083 28 H 0.033 0.967 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.259 0.741 34 H 0.402 0.598 35 H 0.422 0.578 36 H 0.162 0.838 37 H 0.178 0.822 38 H 0.100 0.900 39 H 0.121 0.879 40 H 0.096 0.904 41 H 0.114 0.886 42 H 0.061 0.939 43 H 0.105 0.895 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.667 7.721 17.969 31.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.172 4.172 3 C 0.159 3.841 4 H 0.038 0.962 5 C -0.642 4.642 6 H 0.062 0.938 7 C -0.207 4.207 8 N -0.569 5.569 9 Si 0.900 3.100 10 H -0.178 1.178 11 H -0.198 1.198 12 H -0.212 1.212 13 N -0.364 5.364 14 C 0.392 3.608 15 O -0.491 6.491 16 N -0.328 5.328 17 C 0.038 3.962 18 C -0.124 4.124 19 C -0.124 4.124 20 C -0.044 4.044 21 C -0.181 4.181 22 C -0.118 4.118 23 C 0.268 3.732 24 O -0.388 6.388 25 C -0.194 4.194 26 C -0.146 4.146 27 C -0.119 4.119 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.237 0.763 35 H 0.260 0.740 36 H 0.179 0.821 37 H 0.195 0.805 38 H 0.118 0.882 39 H 0.139 0.861 40 H 0.115 0.885 41 H 0.132 0.868 42 H 0.080 0.920 43 H 0.123 0.877 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -24.923 7.142 15.054 29.980 hybrid contribution 1.884 0.674 1.513 2.509 sum -23.039 7.816 16.566 29.433 Atomic orbital electron populations 1.21731 0.95580 1.00319 1.01199 1.22152 0.95314 0.98275 1.01413 1.18809 0.93484 0.89542 0.82256 0.96243 1.22349 0.91320 1.47088 1.03400 0.93779 1.26750 0.97783 0.93753 1.02404 1.70931 1.04911 1.44800 1.36283 0.83576 0.74192 0.78610 0.73598 1.17843 1.19782 1.21193 1.45203 1.14020 1.59039 1.18089 1.16200 0.82882 0.78621 0.83075 1.90906 1.51921 1.65761 1.40501 1.42446 1.12565 1.60658 1.17153 1.17662 0.85367 0.97875 0.95270 1.21459 0.95990 0.99588 0.95328 1.21362 0.93188 0.97646 1.00216 1.20472 0.97367 0.95934 0.90623 1.20360 0.95137 1.05774 0.96808 1.21429 0.95202 0.95964 0.99200 1.23698 0.92905 0.72026 0.84579 1.90542 1.72979 1.44216 1.31067 1.22386 0.90799 1.04794 1.01453 1.21553 1.04427 0.97998 0.90636 1.20629 0.90357 0.99645 1.01275 0.94777 0.92161 0.93451 0.92927 0.91699 0.93188 0.76305 0.74009 0.82076 0.80477 0.88163 0.86132 0.88522 0.86771 0.91981 0.87668 0.86809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 8.53 71.98 0.61 -4.73 16 2 C -0.13 -5.89 5.20 30.60 0.16 -5.73 16 3 C 0.26 12.94 1.81 44.24 0.08 13.02 16 4 H 0.02 1.09 6.06 -2.38 -0.01 1.08 16 5 C -0.60 -33.43 9.09 25.60 0.23 -33.19 16 6 H 0.04 2.55 7.95 -2.91 -0.02 2.52 16 7 C -0.01 -0.39 5.43 84.65 0.46 0.07 16 8 N -0.93 -57.45 13.70 21.45 0.29 -57.16 16 9 Si 1.08 52.77 25.36 68.60 1.74 54.51 16 10 H -0.25 -11.29 6.76 99.48 0.67 -10.62 16 11 H -0.27 -13.30 6.36 99.48 0.63 -12.67 16 12 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 13 N -0.71 -28.92 5.03 -461.42 -2.32 -31.25 16 14 C 0.69 27.43 7.01 179.05 1.26 28.68 16 15 O -0.61 -29.19 10.96 -3.99 -0.04 -29.23 16 16 N -0.68 -19.84 5.34 -317.29 -1.70 -21.53 16 17 C 0.13 3.75 6.29 38.10 0.24 3.99 16 18 C -0.10 -1.84 9.95 22.43 0.22 -1.61 16 19 C -0.11 -1.42 9.64 22.27 0.21 -1.20 16 20 C -0.04 -0.71 5.78 -19.58 -0.11 -0.83 16 21 C -0.18 -4.90 5.82 -20.11 -0.12 -5.01 16 22 C -0.10 -3.36 8.25 22.70 0.19 -3.17 16 23 C 0.39 10.99 6.89 28.41 0.20 11.19 16 24 O -0.51 -19.97 17.26 -2.94 -0.05 -20.02 16 25 C -0.16 -2.44 6.19 30.24 0.19 -2.26 16 26 C -0.11 -0.94 5.90 30.62 0.18 -0.76 16 27 C -0.08 -0.61 5.70 29.64 0.17 -0.44 16 28 H 0.03 1.50 7.89 -2.39 -0.02 1.48 16 29 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.05 1.94 5.63 -2.39 -0.01 1.93 16 31 H 0.05 2.40 4.43 -2.39 -0.01 2.39 16 32 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.26 15.87 8.72 -92.71 -0.81 15.06 16 34 H 0.40 14.09 8.54 -92.71 -0.79 13.30 16 35 H 0.42 8.90 8.84 -92.71 -0.82 8.08 16 36 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 37 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 38 H 0.10 4.53 5.92 -2.91 -0.02 4.52 16 39 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.11 0.45 8.14 -2.39 -0.02 0.44 16 44 H 0.11 0.24 8.11 -2.39 -0.02 0.22 16 Total: -1.00 -82.44 350.52 1.38 -81.06 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: -0.71 Total: 25.61 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 4.17 Total: -1.99 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -3.72 Total: -109.94 kcal Atomic # 8 Polarization: -49.16 SS G_CDS: -0.09 Total: -49.25 kcal Atomic # 14 Polarization: 52.77 SS G_CDS: 1.74 Total: 54.51 kcal Total: -82.44 1.38 -81.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156164180.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.820 kcal (2) G-P(sol) polarization free energy of solvation -82.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds