Wall clock time and date at job start Tue Mar 31 2020 11:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47188 * 2 1 4 4 N 1.46503 * 109.47550 * 179.97438 * 3 2 1 5 5 C 1.36893 * 120.00036 * 283.58271 * 4 3 2 6 6 H 1.08001 * 120.00097 * 314.96804 * 5 4 3 7 7 C 1.39028 * 119.99880 * 134.96209 * 5 4 3 8 8 N 1.31380 * 119.99815 * 338.97910 * 7 5 4 9 9 Si 1.86797 * 119.99839 * 158.98404 * 7 5 4 10 10 H 1.48507 * 109.47177 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47349 * 119.99792 * 9 7 5 12 12 H 1.48507 * 109.47006 * 239.99945 * 9 7 5 13 13 C 1.34772 * 120.00076 * 103.57802 * 4 3 2 14 14 O 1.21620 * 120.00450 * 186.45896 * 13 4 3 15 15 C 1.47490 * 120.00096 * 6.46374 * 13 4 3 16 16 C 1.39841 * 120.08436 * 323.92174 * 15 13 4 17 17 C 1.37623 * 119.93652 * 179.97438 * 16 15 13 18 18 C 1.39192 * 120.09787 * 0.02562 * 17 16 15 19 19 C 1.39158 * 120.09885 * 0.02562 * 18 17 16 20 20 C 1.37639 * 120.12699 * 359.97438 * 19 18 17 21 21 C 1.50699 * 119.81378 * 179.97438 * 19 18 17 22 22 C 1.52908 * 109.48097 * 326.03406 * 21 19 18 23 23 C 1.50492 * 109.87698 * 48.54292 * 22 21 19 24 24 O 1.21283 * 119.59476 * 144.86282 * 23 22 21 25 25 N 1.34523 * 120.81029 * 324.87645 * 23 22 21 26 26 C 1.46495 * 119.72667 * 180.67840 * 25 23 22 27 27 H 1.09003 * 109.47397 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47261 * 299.99788 * 1 2 3 29 29 H 1.09000 * 109.47604 * 59.99965 * 1 2 3 30 30 H 1.08997 * 109.47261 * 240.00212 * 2 1 3 31 31 H 1.09008 * 109.47284 * 120.00005 * 2 1 3 32 32 H 1.09008 * 109.47260 * 59.99792 * 3 2 1 33 33 H 1.09005 * 109.47514 * 300.00181 * 3 2 1 34 34 H 0.97007 * 119.99458 * 185.04285 * 8 7 5 35 35 H 1.08002 * 120.03099 * 359.95797 * 16 15 13 36 36 H 1.07996 * 119.94972 * 180.02562 * 17 16 15 37 37 H 1.08000 * 120.04584 * 179.97438 * 20 19 18 38 38 H 1.09001 * 109.46795 * 86.03344 * 21 19 18 39 39 H 1.08998 * 109.47403 * 206.03058 * 21 19 18 40 40 H 1.09002 * 109.40687 * 168.67239 * 22 21 19 41 41 H 1.09006 * 109.40981 * 288.43349 * 22 21 19 42 42 H 1.09002 * 109.46694 * 269.97823 * 26 25 23 43 43 H 1.08991 * 109.47024 * 29.98040 * 26 25 23 44 44 H 1.08998 * 109.46994 * 149.98197 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1890 1.1643 1.1533 6 1 3.8861 1.6202 2.0844 7 6 5.2734 0.2948 1.1255 8 7 5.4012 -0.5645 0.1399 9 14 6.5487 0.3483 2.4894 10 1 6.1777 1.3972 3.4731 11 1 6.6027 -0.9711 3.1686 12 1 7.8798 0.6619 1.9104 13 6 4.1793 1.7164 -1.1337 14 8 5.3897 1.6021 -1.1643 15 6 3.4494 2.1549 -2.3380 16 6 2.1887 1.6228 -2.6261 17 6 1.5101 2.0345 -3.7504 18 6 2.0770 2.9791 -4.6011 19 6 3.3318 3.5097 -4.3176 20 6 4.0164 3.1027 -3.1950 21 6 3.9398 4.5316 -5.2433 22 6 3.5250 4.2262 -6.6830 23 6 2.0389 3.9986 -6.7500 24 8 1.4204 4.3643 -7.7271 25 7 1.3880 3.3948 -5.7393 26 6 -0.0566 3.1719 -5.8360 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 6.1163 -1.2198 0.1575 35 1 1.7481 0.8892 -1.9671 36 1 0.5363 1.6240 -3.9729 37 1 4.9904 3.5150 -2.9765 38 1 3.5889 5.5260 -4.9674 39 1 5.0261 4.4943 -5.1626 40 1 3.7918 5.0672 -7.3230 41 1 4.0439 3.3316 -7.0275 42 1 -0.5852 4.0311 -5.4228 43 1 -0.3351 3.0424 -6.8817 44 1 -0.3244 2.2765 -5.2750 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158095171.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:46 Heat of formation + Delta-G solvation = -14.423184 kcal Electronic energy + Delta-G solvation = -27052.488015 eV Core-core repulsion = 23356.828426 eV Total energy + Delta-G solvation = -3695.659589 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.13663 -39.31809 -37.77129 -35.36184 -35.22921 -34.41806 -32.67010 -31.22716 -30.11086 -29.47868 -27.61797 -25.91978 -24.86601 -24.24800 -22.88003 -21.68048 -20.97426 -19.76107 -19.02559 -17.60865 -17.06278 -16.49044 -16.30357 -15.70627 -15.25108 -14.78582 -14.49826 -14.37263 -14.19367 -13.92476 -13.82780 -13.43485 -13.30462 -13.26290 -12.74198 -12.57976 -12.38031 -12.28418 -12.10737 -11.69303 -11.56801 -11.42315 -11.35310 -11.07665 -10.92380 -10.70991 -10.59526 -10.41899 -10.32480 -10.13018 -9.96838 -9.81984 -8.80796 -8.56967 -8.17610 -7.66419 -7.15540 -6.16069 -3.88399 1.20699 1.56040 2.46306 2.72242 3.27845 3.38338 3.40101 3.72765 4.24403 4.28893 4.54880 4.64110 4.69689 4.84154 4.96205 5.06780 5.13757 5.19084 5.24822 5.30146 5.43904 5.52597 5.59165 5.60393 5.60865 5.64037 5.72865 5.74405 5.91063 5.94440 5.99423 6.16585 6.23287 6.26434 6.35252 6.40247 6.52010 6.65801 6.75815 6.85621 6.98555 7.08458 7.30516 7.59097 7.84667 8.24401 8.99993 9.12089 9.59830 10.23804 10.91782 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018723 B = 0.003992 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.144266 B = 7012.426333 C = 8209.168016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.082 3.918 4 N -0.439 5.439 5 C -0.352 4.352 6 H 0.080 0.920 7 C 0.077 3.923 8 N -0.820 5.820 9 Si 0.909 3.091 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.280 1.280 13 C 0.503 3.497 14 O -0.531 6.531 15 C -0.108 4.108 16 C -0.089 4.089 17 C -0.160 4.160 18 C 0.150 3.850 19 C -0.132 4.132 20 C -0.045 4.045 21 C -0.074 4.074 22 C -0.136 4.136 23 C 0.519 3.481 24 O -0.537 6.537 25 N -0.551 5.551 26 C 0.072 3.928 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.264 0.736 35 H 0.153 0.847 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.063 0.937 43 H 0.082 0.918 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.470 5.613 -8.171 13.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.041 4.041 4 N -0.160 5.160 5 C -0.479 4.479 6 H 0.098 0.902 7 C -0.135 4.135 8 N -0.453 5.453 9 Si 0.736 3.264 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.206 1.206 13 C 0.291 3.709 14 O -0.410 6.410 15 C -0.113 4.113 16 C -0.108 4.108 17 C -0.180 4.180 18 C 0.056 3.944 19 C -0.134 4.134 20 C -0.065 4.065 21 C -0.111 4.111 22 C -0.176 4.176 23 C 0.309 3.691 24 O -0.414 6.414 25 N -0.274 5.274 26 C -0.069 4.069 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.170 0.830 36 H 0.145 0.855 37 H 0.152 0.848 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.082 0.918 43 H 0.101 0.899 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.060 5.670 -8.875 13.893 hybrid contribution 0.469 -0.318 0.707 0.906 sum -8.591 5.352 -8.168 13.007 Atomic orbital electron populations 1.21777 0.96775 1.01051 1.01158 1.21855 0.93735 0.98423 1.03418 1.22163 0.84548 0.96006 1.01410 1.43144 1.02704 1.61064 1.09059 1.18994 1.13418 1.28187 0.87272 0.90201 1.25263 0.98332 0.93590 0.96347 1.69841 1.30346 1.14107 1.30991 0.86211 0.81760 0.77644 0.80793 1.19499 1.21212 1.20596 1.17816 0.87232 0.82671 0.83193 1.90641 1.13723 1.53743 1.82920 1.20587 0.94894 0.98198 0.97573 1.21931 0.93819 0.99331 0.95674 1.20729 1.01701 0.99260 0.96339 1.17675 0.92452 0.96339 0.87919 1.19342 0.94594 1.01303 0.98168 1.20848 0.99027 0.95060 0.91549 1.20393 1.01816 0.97755 0.91122 1.21694 0.91430 1.05225 0.99250 1.20770 0.90648 0.76242 0.81449 1.90703 1.69186 1.49879 1.31640 1.45204 1.09098 1.56646 1.16444 1.21876 0.78826 1.02293 1.03935 0.93154 0.92941 0.93342 0.92020 0.90548 0.92729 0.90336 0.92558 0.82990 0.85458 0.84822 0.90200 0.88958 0.87558 0.87901 0.91814 0.89945 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.90 37.15 0.37 -1.56 16 2 C -0.14 -2.36 5.23 -26.74 -0.14 -2.50 16 3 C 0.08 1.55 4.85 -4.04 -0.02 1.53 16 4 N -0.44 -10.62 2.53 -116.01 -0.29 -10.92 16 5 C -0.35 -9.36 9.03 -15.00 -0.14 -9.50 16 6 H 0.08 2.06 7.92 -52.49 -0.42 1.64 16 7 C 0.08 2.10 4.29 -17.45 -0.07 2.02 16 8 N -0.82 -23.66 11.81 55.50 0.66 -23.00 16 9 Si 0.91 21.37 29.61 -169.99 -5.03 16.34 16 10 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.50 12.53 6.82 -12.49 -0.09 12.44 16 14 O -0.53 -15.48 14.44 5.26 0.08 -15.41 16 15 C -0.11 -2.13 5.45 -104.94 -0.57 -2.70 16 16 C -0.09 -1.47 7.36 -39.21 -0.29 -1.75 16 17 C -0.16 -2.21 9.31 -39.45 -0.37 -2.57 16 18 C 0.15 2.10 6.33 -83.72 -0.53 1.57 16 19 C -0.13 -1.88 5.65 -104.50 -0.59 -2.47 16 20 C -0.05 -0.78 9.24 -39.22 -0.36 -1.14 16 21 C -0.07 -0.81 6.00 -27.93 -0.17 -0.98 16 22 C -0.14 -1.44 6.08 -28.03 -0.17 -1.61 16 23 C 0.52 6.97 7.45 -11.20 -0.08 6.89 16 24 O -0.54 -8.56 16.60 5.55 0.09 -8.47 16 25 N -0.55 -7.08 3.08 -120.97 -0.37 -7.45 16 26 C 0.07 0.74 10.16 59.84 0.61 1.35 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 1.15 6.99 -51.93 -0.36 0.79 16 31 H 0.08 1.51 8.07 -51.92 -0.42 1.09 16 32 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 33 H 0.08 1.32 4.00 -51.93 -0.21 1.11 16 34 H 0.26 7.30 8.32 -40.82 -0.34 6.96 16 35 H 0.15 2.47 3.40 -52.49 -0.18 2.30 16 36 H 0.13 1.38 5.98 -52.49 -0.31 1.07 16 37 H 0.13 2.29 8.01 -52.49 -0.42 1.87 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 0.89 8.06 -51.93 -0.42 0.47 16 40 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.85 7.39 -51.93 -0.38 0.47 16 44 H 0.08 0.68 5.78 -51.93 -0.30 0.38 16 LS Contribution 351.57 15.07 5.30 5.30 Total: -1.00 -33.86 351.57 -8.13 -41.98 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.94 Total: 2.61 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -2.61 Total: -0.98 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: -0.01 Total: -41.37 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: 0.17 Total: -23.88 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.86 -8.13 -41.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158095171.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.562 kcal (2) G-P(sol) polarization free energy of solvation -33.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds