Wall clock time and date at job start Tue Mar 31 2020 11:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47188 * 2 1 4 4 N 1.46503 * 109.47550 * 179.97438 * 3 2 1 5 5 C 1.36893 * 120.00036 * 283.58271 * 4 3 2 6 6 H 1.08001 * 120.00097 * 314.96804 * 5 4 3 7 7 C 1.39028 * 119.99880 * 134.96209 * 5 4 3 8 8 N 1.31380 * 119.99815 * 338.97910 * 7 5 4 9 9 Si 1.86797 * 119.99839 * 158.98404 * 7 5 4 10 10 H 1.48507 * 109.47177 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47349 * 119.99792 * 9 7 5 12 12 H 1.48507 * 109.47006 * 239.99945 * 9 7 5 13 13 C 1.34772 * 120.00076 * 103.57802 * 4 3 2 14 14 O 1.21620 * 120.00450 * 186.45896 * 13 4 3 15 15 C 1.47490 * 120.00096 * 6.46374 * 13 4 3 16 16 C 1.39841 * 120.08436 * 323.92174 * 15 13 4 17 17 C 1.37623 * 119.93652 * 179.97438 * 16 15 13 18 18 C 1.39192 * 120.09787 * 0.02562 * 17 16 15 19 19 C 1.39158 * 120.09885 * 0.02562 * 18 17 16 20 20 C 1.37639 * 120.12699 * 359.97438 * 19 18 17 21 21 C 1.50699 * 119.81378 * 179.97438 * 19 18 17 22 22 C 1.52908 * 109.48097 * 326.03406 * 21 19 18 23 23 C 1.50492 * 109.87698 * 48.54292 * 22 21 19 24 24 O 1.21283 * 119.59476 * 144.86282 * 23 22 21 25 25 N 1.34523 * 120.81029 * 324.87645 * 23 22 21 26 26 C 1.46495 * 119.72667 * 180.67840 * 25 23 22 27 27 H 1.09003 * 109.47397 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47261 * 299.99788 * 1 2 3 29 29 H 1.09000 * 109.47604 * 59.99965 * 1 2 3 30 30 H 1.08997 * 109.47261 * 240.00212 * 2 1 3 31 31 H 1.09008 * 109.47284 * 120.00005 * 2 1 3 32 32 H 1.09008 * 109.47260 * 59.99792 * 3 2 1 33 33 H 1.09005 * 109.47514 * 300.00181 * 3 2 1 34 34 H 0.97007 * 119.99458 * 185.04285 * 8 7 5 35 35 H 1.08002 * 120.03099 * 359.95797 * 16 15 13 36 36 H 1.07996 * 119.94972 * 180.02562 * 17 16 15 37 37 H 1.08000 * 120.04584 * 179.97438 * 20 19 18 38 38 H 1.09001 * 109.46795 * 86.03344 * 21 19 18 39 39 H 1.08998 * 109.47403 * 206.03058 * 21 19 18 40 40 H 1.09002 * 109.40687 * 168.67239 * 22 21 19 41 41 H 1.09006 * 109.40981 * 288.43349 * 22 21 19 42 42 H 1.09002 * 109.46694 * 269.97823 * 26 25 23 43 43 H 1.08991 * 109.47024 * 29.98040 * 26 25 23 44 44 H 1.08998 * 109.46994 * 149.98197 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1890 1.1643 1.1533 6 1 3.8861 1.6202 2.0844 7 6 5.2734 0.2948 1.1255 8 7 5.4012 -0.5645 0.1399 9 14 6.5487 0.3483 2.4894 10 1 6.1777 1.3972 3.4731 11 1 6.6027 -0.9711 3.1686 12 1 7.8798 0.6619 1.9104 13 6 4.1793 1.7164 -1.1337 14 8 5.3897 1.6021 -1.1643 15 6 3.4494 2.1549 -2.3380 16 6 2.1887 1.6228 -2.6261 17 6 1.5101 2.0345 -3.7504 18 6 2.0770 2.9791 -4.6011 19 6 3.3318 3.5097 -4.3176 20 6 4.0164 3.1027 -3.1950 21 6 3.9398 4.5316 -5.2433 22 6 3.5250 4.2262 -6.6830 23 6 2.0389 3.9986 -6.7500 24 8 1.4204 4.3643 -7.7271 25 7 1.3880 3.3948 -5.7393 26 6 -0.0566 3.1719 -5.8360 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 6.1163 -1.2198 0.1575 35 1 1.7481 0.8892 -1.9671 36 1 0.5363 1.6240 -3.9729 37 1 4.9904 3.5150 -2.9765 38 1 3.5889 5.5260 -4.9674 39 1 5.0261 4.4943 -5.1626 40 1 3.7918 5.0672 -7.3230 41 1 4.0439 3.3316 -7.0275 42 1 -0.5852 4.0311 -5.4228 43 1 -0.3351 3.0424 -6.8817 44 1 -0.3244 2.2765 -5.2750 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158095171.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:45 Heat of formation + Delta-G solvation = -34.812107 kcal Electronic energy + Delta-G solvation = -27053.372145 eV Core-core repulsion = 23356.828426 eV Total energy + Delta-G solvation = -3696.543719 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.24113 -40.81578 -39.18328 -36.93794 -36.54466 -35.50666 -34.42698 -32.93871 -31.29382 -30.78028 -28.51500 -27.51073 -26.48657 -25.29129 -24.30900 -22.80618 -22.37885 -21.34132 -20.33827 -18.88221 -18.38505 -17.85304 -17.51313 -17.11748 -16.74422 -16.49733 -15.93088 -15.63194 -15.39280 -15.30363 -14.94607 -14.84315 -14.68986 -14.46244 -13.99522 -13.75852 -13.61507 -13.51543 -13.20327 -13.10529 -12.92095 -12.79755 -12.71272 -12.57776 -12.45317 -12.36562 -12.02947 -11.96885 -11.70017 -11.53093 -11.19907 -10.97308 -10.80689 -10.07716 -9.77599 -9.12552 -8.88218 -8.20531 -5.96363 -0.06634 0.34004 1.35480 1.39394 1.45303 1.52795 1.73995 2.26703 2.41001 2.92636 3.09838 3.27267 3.32906 3.65752 3.71910 3.93681 4.05247 4.12273 4.18133 4.24679 4.34170 4.35882 4.42964 4.44804 4.57651 4.64046 4.73782 4.76932 4.82254 4.85197 4.86478 4.91596 5.04241 5.07264 5.12580 5.25442 5.29673 5.39767 5.48409 5.50099 5.55162 5.67885 5.77050 6.20505 6.23519 6.82217 7.03006 7.20557 7.67082 8.33906 8.87863 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018723 B = 0.003992 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.144266 B = 7012.426333 C = 8209.168016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 C 0.080 3.920 4 N -0.455 5.455 5 C -0.368 4.368 6 H 0.081 0.919 7 C 0.029 3.971 8 N -0.860 5.860 9 Si 0.966 3.034 10 H -0.257 1.257 11 H -0.273 1.273 12 H -0.296 1.296 13 C 0.494 3.506 14 O -0.590 6.590 15 C -0.142 4.142 16 C -0.088 4.088 17 C -0.145 4.145 18 C 0.162 3.838 19 C -0.126 4.126 20 C -0.052 4.052 21 C -0.072 4.072 22 C -0.132 4.132 23 C 0.514 3.486 24 O -0.563 6.563 25 N -0.551 5.551 26 C 0.064 3.936 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.259 0.741 35 H 0.154 0.846 36 H 0.166 0.834 37 H 0.123 0.877 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.128 0.872 41 H 0.112 0.888 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.900 6.690 -9.484 16.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.165 4.165 3 C -0.042 4.042 4 N -0.175 5.175 5 C -0.496 4.496 6 H 0.099 0.901 7 C -0.179 4.179 8 N -0.494 5.494 9 Si 0.791 3.209 10 H -0.180 1.180 11 H -0.198 1.198 12 H -0.222 1.222 13 C 0.284 3.716 14 O -0.473 6.473 15 C -0.146 4.146 16 C -0.107 4.107 17 C -0.165 4.165 18 C 0.067 3.933 19 C -0.128 4.128 20 C -0.072 4.072 21 C -0.109 4.109 22 C -0.171 4.171 23 C 0.305 3.695 24 O -0.442 6.442 25 N -0.274 5.274 26 C -0.077 4.077 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.068 0.932 35 H 0.171 0.829 36 H 0.184 0.816 37 H 0.141 0.859 38 H 0.112 0.888 39 H 0.124 0.876 40 H 0.146 0.854 41 H 0.130 0.870 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.557 6.754 -10.165 16.808 hybrid contribution 1.112 -0.545 0.968 1.572 sum -10.444 6.209 -9.196 15.239 Atomic orbital electron populations 1.21706 0.92599 1.02464 1.02936 1.21721 0.97202 0.96663 1.00889 1.22408 0.81492 0.97362 1.02968 1.43407 1.04909 1.60740 1.08398 1.19262 1.14119 1.27874 0.88328 0.90093 1.26042 1.00002 0.93383 0.98443 1.69951 1.30989 1.15281 1.33208 0.85328 0.78473 0.78477 0.78619 1.18029 1.19819 1.22240 1.18631 0.87041 0.81283 0.84678 1.90577 1.16336 1.56050 1.84328 1.20255 0.96541 1.00972 0.96873 1.21865 0.92707 0.99262 0.96886 1.20997 1.02697 0.98217 0.94612 1.17799 0.92140 0.95470 0.87935 1.19579 0.94585 1.01321 0.97333 1.20799 0.98947 0.95071 0.92361 1.20476 1.02610 0.97229 0.90549 1.21755 0.89576 1.06617 0.99190 1.21268 0.91657 0.75527 0.81000 1.90699 1.69987 1.50934 1.32587 1.45352 1.10195 1.56085 1.15748 1.22122 0.77245 1.03893 1.04412 0.91980 0.91886 0.90801 0.93821 0.93913 0.91994 0.87834 0.93157 0.82897 0.81646 0.85908 0.88819 0.87566 0.85422 0.86995 0.90701 0.90173 0.87802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.90 71.98 0.71 -2.50 16 2 C -0.13 -4.37 5.23 30.59 0.16 -4.21 16 3 C 0.08 3.00 4.85 86.38 0.42 3.42 16 4 N -0.45 -22.76 2.53 -639.18 -1.62 -24.38 16 5 C -0.37 -20.35 9.03 84.09 0.76 -19.59 16 6 H 0.08 4.30 7.92 -2.91 -0.02 4.28 16 7 C 0.03 1.65 4.29 84.95 0.36 2.01 16 8 N -0.86 -52.17 11.81 21.68 0.26 -51.92 16 9 Si 0.97 45.48 29.61 68.60 2.03 47.51 16 10 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 12 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 13 C 0.49 25.65 6.82 86.68 0.59 26.24 16 14 O -0.59 -36.36 14.44 -4.09 -0.06 -36.42 16 15 C -0.14 -5.65 5.45 -20.07 -0.11 -5.76 16 16 C -0.09 -2.78 7.36 22.51 0.17 -2.62 16 17 C -0.15 -3.48 9.31 22.35 0.21 -3.27 16 18 C 0.16 3.98 6.33 38.39 0.24 4.22 16 19 C -0.13 -3.32 5.65 -19.79 -0.11 -3.43 16 20 C -0.05 -1.78 9.24 22.51 0.21 -1.58 16 21 C -0.07 -1.37 6.00 29.82 0.18 -1.19 16 22 C -0.13 -2.37 6.08 29.75 0.18 -2.18 16 23 C 0.51 12.20 7.45 87.63 0.65 12.85 16 24 O -0.56 -16.49 16.60 -3.04 -0.05 -16.54 16 25 N -0.55 -12.18 3.08 -655.15 -2.02 -14.20 16 26 C 0.06 1.05 10.16 127.77 1.30 2.35 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.04 1.65 6.99 -2.39 -0.02 1.63 16 31 H 0.04 1.74 8.07 -2.38 -0.02 1.72 16 32 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.10 3.35 4.00 -2.38 -0.01 3.34 16 34 H 0.26 15.13 8.32 -92.70 -0.77 14.36 16 35 H 0.15 4.75 3.40 -2.91 -0.01 4.74 16 36 H 0.17 2.69 5.98 -2.91 -0.02 2.67 16 37 H 0.12 4.38 8.01 -2.91 -0.02 4.35 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.11 1.79 8.06 -2.39 -0.02 1.77 16 40 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.08 1.40 7.39 -2.39 -0.02 1.38 16 44 H 0.10 1.21 5.78 -2.39 -0.01 1.19 16 Total: -1.00 -78.71 351.57 5.49 -73.22 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 1.02 Total: 17.96 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 5.92 Total: 4.76 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -3.38 Total: -90.49 kcal Atomic # 8 Polarization: -52.84 SS G_CDS: -0.11 Total: -52.95 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -78.71 5.49 -73.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158095171.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.409 kcal (2) G-P(sol) polarization free energy of solvation -78.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds