Wall clock time and date at job start Tue Mar 31 2020 11:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47053 * 2 1 4 4 N 1.46495 * 109.47181 * 180.02562 * 3 2 1 5 5 C 1.37100 * 119.99919 * 270.00181 * 4 3 2 6 6 H 1.08007 * 120.00229 * 140.03677 * 5 4 3 7 7 C 1.38951 * 120.00033 * 320.03757 * 5 4 3 8 8 N 1.31411 * 119.99963 * 163.78387 * 7 5 4 9 9 Si 1.86796 * 119.99919 * 343.78042 * 7 5 4 10 10 H 1.48497 * 109.47164 * 95.35495 * 9 7 5 11 11 H 1.48506 * 109.47065 * 215.35276 * 9 7 5 12 12 H 1.48507 * 109.47350 * 335.35228 * 9 7 5 13 13 C 1.34781 * 120.00381 * 90.00007 * 4 3 2 14 14 O 1.21289 * 119.99361 * 5.47370 * 13 4 3 15 15 C 1.50690 * 120.00166 * 185.47323 * 13 4 3 16 16 C 1.50701 * 109.47223 * 175.05519 * 15 13 4 17 17 C 1.34214 * 126.50375 * 264.95893 * 16 15 13 18 18 N 1.36929 * 109.89020 * 179.80491 * 17 16 15 19 19 H 0.96993 * 125.07007 * 180.26651 * 18 17 16 20 20 C 1.37704 * 109.86000 * 0.38027 * 18 17 16 21 21 C 1.39221 * 133.37246 * 179.91868 * 20 18 17 22 22 C 1.37718 * 120.01944 * 179.68623 * 21 20 18 23 23 C 1.38785 * 120.72079 * 0.02562 * 22 21 20 24 24 C 1.38124 * 120.31985 * 0.02562 * 23 22 21 25 25 O 1.35885 * 120.22510 * 179.97438 * 24 23 22 26 26 C 1.42904 * 116.99698 * 0.02562 * 25 24 23 27 27 C 1.40051 * 119.55346 * 359.95623 * 24 23 22 28 28 H 1.08993 * 109.47080 * 300.00097 * 1 2 3 29 29 H 1.09003 * 109.47335 * 59.99788 * 1 2 3 30 30 H 1.09000 * 109.47064 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47190 * 240.00428 * 2 1 3 32 32 H 1.08995 * 109.47634 * 120.00034 * 2 1 3 33 33 H 1.08996 * 109.46773 * 60.00173 * 3 2 1 34 34 H 1.09003 * 109.47223 * 300.00280 * 3 2 1 35 35 H 0.96998 * 119.99699 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47264 * 55.05472 * 15 13 4 37 37 H 1.08997 * 109.47389 * 295.05400 * 15 13 4 38 38 H 1.08004 * 125.05233 * 0.03452 * 17 16 15 39 39 H 1.07996 * 119.98667 * 359.66114 * 21 20 18 40 40 H 1.07998 * 119.63492 * 180.02562 * 22 21 20 41 41 H 1.08007 * 119.83989 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.47011 * 59.99844 * 26 25 24 43 43 H 1.09000 * 109.46840 * 180.02562 * 26 25 24 44 44 H 1.08996 * 109.47080 * 299.99487 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1909 1.4424 1.1864 6 1 5.0818 0.8416 1.2952 7 6 3.7399 2.2151 2.2496 8 7 4.1861 1.9858 3.4642 9 14 2.4996 3.5798 1.9523 10 1 1.1298 3.0693 2.2136 11 1 2.7864 4.7166 2.8637 12 1 2.5965 4.0385 0.5432 13 6 4.1784 1.4428 -1.1681 14 8 3.5756 1.5431 -2.2158 15 6 5.6802 1.3184 -1.1717 16 6 6.1729 1.2227 -2.5926 17 6 6.4347 0.0956 -3.2727 18 7 6.8593 0.4028 -4.5377 19 1 7.1042 -0.2456 -5.2162 20 6 6.8893 1.7697 -4.7021 21 6 7.2372 2.5973 -5.7662 22 6 7.1574 3.9654 -5.6297 23 6 6.7325 4.5354 -4.4378 24 6 6.3830 3.7350 -3.3677 25 8 5.9677 4.2952 -2.2014 26 6 5.9151 5.7223 -2.1498 27 6 6.4591 2.3422 -3.4930 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.8715 2.5255 4.2063 36 1 5.9718 0.4217 -0.6248 37 1 6.1185 2.1942 -0.6933 38 1 6.3231 -0.9049 -2.8817 39 1 7.5702 2.1663 -6.6988 40 1 7.4284 4.6015 -6.4593 41 1 6.6756 5.6101 -4.3462 42 1 5.2271 6.0883 -2.9118 43 1 5.5689 6.0377 -1.1655 44 1 6.9095 6.1294 -2.3323 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180847385.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:37 Heat of formation + Delta-G solvation = -7.709528 kcal Electronic energy + Delta-G solvation = -27135.026162 eV Core-core repulsion = 23439.657699 eV Total energy + Delta-G solvation = -3695.368463 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.05033 -38.80045 -38.58642 -35.84309 -35.17026 -32.98665 -32.19153 -31.47451 -29.53413 -29.03041 -27.26312 -26.69695 -25.42041 -24.30039 -22.27378 -21.56447 -21.22637 -19.63526 -18.79736 -17.94598 -16.72176 -16.49669 -16.09795 -15.84113 -15.41419 -15.16521 -15.04879 -14.70224 -14.19564 -14.11132 -13.88777 -13.52934 -13.11776 -12.91477 -12.70226 -12.38366 -12.19137 -12.06837 -11.97567 -11.71031 -11.58380 -11.48075 -11.20050 -11.03073 -10.87420 -10.78577 -10.62384 -10.44167 -10.25610 -9.95521 -9.66154 -9.08253 -8.84634 -8.37599 -8.00363 -7.63660 -7.02581 -6.37198 -4.00491 1.48760 1.84107 3.04459 3.11556 3.26910 3.33031 3.37464 3.68132 3.93139 4.12742 4.21307 4.63254 4.98272 5.07246 5.13024 5.23900 5.32179 5.38199 5.39285 5.60590 5.62351 5.67640 5.69292 5.74731 5.84024 5.90295 6.03607 6.09539 6.16841 6.29538 6.41717 6.45482 6.47596 6.49302 6.54083 6.65945 6.72554 6.80546 6.90263 6.96660 7.15428 7.30725 7.52457 7.77557 7.83911 8.19583 8.35305 9.07896 9.49719 9.84899 10.73879 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014414 B = 0.004834 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.027449 B = 5791.110018 C = 6624.956294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.105 3.895 4 N -0.475 5.475 5 C -0.336 4.336 6 H 0.104 0.896 7 C 0.066 3.934 8 N -0.870 5.870 9 Si 0.879 3.121 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.261 1.261 13 C 0.496 3.504 14 O -0.588 6.588 15 C -0.050 4.050 16 C -0.104 4.104 17 C 0.029 3.971 18 N -0.595 5.595 19 H 0.413 0.587 20 C 0.132 3.868 21 C -0.178 4.178 22 C -0.061 4.061 23 C -0.259 4.259 24 C 0.192 3.808 25 O -0.298 6.298 26 C 0.028 3.972 27 C -0.118 4.118 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.273 0.727 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.167 0.833 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.052 0.948 43 H 0.098 0.902 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.645 1.173 -12.724 13.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.018 4.018 4 N -0.197 5.197 5 C -0.463 4.463 6 H 0.121 0.879 7 C -0.140 4.140 8 N -0.507 5.507 9 Si 0.708 3.292 10 H -0.204 1.204 11 H -0.219 1.219 12 H -0.185 1.185 13 C 0.285 3.715 14 O -0.472 6.472 15 C -0.090 4.090 16 C -0.111 4.111 17 C -0.095 4.095 18 N -0.198 5.198 19 H 0.249 0.751 20 C 0.023 3.977 21 C -0.199 4.199 22 C -0.081 4.081 23 C -0.279 4.279 24 C 0.145 3.855 25 O -0.210 6.210 26 C -0.067 4.067 27 C -0.123 4.123 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.120 0.880 38 H 0.185 0.815 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.071 0.929 43 H 0.117 0.883 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.299 1.059 -12.875 13.615 hybrid contribution -0.577 0.679 -0.217 0.917 sum 3.722 1.738 -13.092 13.721 Atomic orbital electron populations 1.21712 0.96522 1.00973 1.01341 1.21776 0.94664 0.98181 1.02334 1.21560 0.83206 0.96313 1.00678 1.43727 1.03560 1.66565 1.05801 1.19068 1.12033 1.27326 0.87876 0.87867 1.25320 0.97123 0.96719 0.94872 1.69709 1.43685 1.38507 0.98756 0.86891 0.80852 0.82300 0.79161 1.20400 1.21884 1.18532 1.20310 0.89176 0.78651 0.83314 1.90537 1.70427 1.54125 1.32096 1.19771 0.93731 1.04397 0.91141 1.19895 1.04814 0.90327 0.96041 1.21467 1.04575 0.99186 0.84256 1.41592 1.60005 1.04822 1.13355 0.75072 1.17895 1.01346 0.83372 0.95086 1.19757 1.10381 0.92680 0.97118 1.20401 0.97673 0.93536 0.96476 1.20805 1.13210 0.99254 0.94617 1.18454 0.91492 0.90455 0.85088 1.86226 1.80730 1.21855 1.32208 1.23040 1.00990 0.79091 1.03582 1.18226 1.08867 0.90298 0.94950 0.93039 0.93094 0.93082 0.92261 0.91241 0.92332 0.91506 0.91709 0.89373 0.88031 0.81529 0.86678 0.86064 0.85864 0.92925 0.88348 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.91 37.16 0.37 -2.04 16 2 C -0.13 -2.60 6.26 -26.73 -0.17 -2.77 16 3 C 0.11 2.43 4.16 -4.04 -0.02 2.41 16 4 N -0.47 -11.70 2.16 -114.81 -0.25 -11.95 16 5 C -0.34 -8.77 9.13 -14.93 -0.14 -8.91 16 6 H 0.10 2.78 7.18 -52.48 -0.38 2.40 16 7 C 0.07 1.75 5.39 -17.47 -0.09 1.66 16 8 N -0.87 -24.19 13.96 55.50 0.77 -23.42 16 9 Si 0.88 21.18 24.75 -169.99 -4.21 16.98 16 10 H -0.28 -6.42 6.77 56.52 0.38 -6.04 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.26 -6.48 7.05 56.52 0.40 -6.08 16 13 C 0.50 11.96 7.61 -10.99 -0.08 11.88 16 14 O -0.59 -15.41 15.60 5.55 0.09 -15.32 16 15 C -0.05 -1.05 4.72 -29.04 -0.14 -1.18 16 16 C -0.10 -1.99 4.81 -102.72 -0.49 -2.48 16 17 C 0.03 0.45 11.74 -16.69 -0.20 0.26 16 18 N -0.59 -8.12 6.08 -10.64 -0.06 -8.18 16 19 H 0.41 3.95 8.96 -40.82 -0.37 3.58 16 20 C 0.13 2.11 7.27 -84.00 -0.61 1.50 16 21 C -0.18 -2.43 10.07 -39.41 -0.40 -2.82 16 22 C -0.06 -0.81 10.01 -39.57 -0.40 -1.21 16 23 C -0.26 -3.87 9.04 -39.42 -0.36 -4.22 16 24 C 0.19 3.51 6.72 -38.94 -0.26 3.25 16 25 O -0.30 -5.67 9.76 -19.38 -0.19 -5.86 16 26 C 0.03 0.39 9.81 101.05 0.99 1.38 16 27 C -0.12 -2.24 6.30 -105.03 -0.66 -2.90 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 33 H 0.06 1.38 3.12 -51.93 -0.16 1.22 16 34 H 0.07 1.56 7.35 -51.93 -0.38 1.18 16 35 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.09 1.69 7.59 -51.93 -0.39 1.29 16 37 H 0.10 2.21 7.62 -51.93 -0.40 1.82 16 38 H 0.17 2.09 8.06 -52.48 -0.42 1.67 16 39 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.12 1.53 6.29 -52.48 -0.33 1.21 16 42 H 0.05 0.66 7.67 -51.93 -0.40 0.26 16 43 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 LS Contribution 360.96 15.07 5.44 5.44 Total: -1.00 -33.07 360.96 -7.22 -40.29 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -6.16 Total: 8.24 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -2.65 Total: -6.21 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.46 Total: -43.55 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.10 Total: -21.19 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.21 Total: 16.98 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.07 -7.22 -40.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180847385.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.579 kcal (2) G-P(sol) polarization free energy of solvation -33.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds