Wall clock time and date at job start Tue Mar 31 2020 11:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46993 * 2 1 4 4 H 1.09002 * 109.46801 * 305.00249 * 3 2 1 5 5 C 1.50691 * 109.47338 * 184.99836 * 3 2 1 6 6 H 1.08003 * 120.00469 * 240.00298 * 5 3 2 7 7 C 1.37884 * 119.99862 * 59.99993 * 5 3 2 8 8 N 1.31507 * 119.99875 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99804 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47379 * 59.99940 * 9 7 5 11 11 H 1.48504 * 109.46888 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47252 * 299.99966 * 9 7 5 13 13 N 1.46500 * 109.47400 * 64.99772 * 3 2 1 14 14 C 1.34778 * 120.00281 * 275.00742 * 13 3 2 15 15 O 1.21554 * 119.99927 * 359.97438 * 14 13 3 16 16 C 1.47858 * 120.00134 * 179.97438 * 14 13 3 17 17 C 1.39619 * 120.11296 * 0.02562 * 16 14 13 18 18 C 1.37978 * 119.99815 * 179.97438 * 17 16 14 19 19 C 1.38260 * 120.21839 * 359.73941 * 18 17 16 20 20 C 1.38945 * 120.22760 * 0.51957 * 19 18 17 21 21 N 1.39951 * 120.00458 * 179.76640 * 20 19 18 22 22 C 1.46765 * 124.34728 * 353.90981 * 21 20 19 23 23 C 1.54482 * 105.47369 * 197.04189 * 22 21 20 24 24 C 1.54620 * 101.76422 * 334.58535 * 23 22 21 25 25 C 1.34417 * 124.35425 * 173.93960 * 21 20 19 26 26 O 1.21286 * 124.93856 * 359.53552 * 25 21 20 27 27 C 1.38642 * 119.99818 * 359.47827 * 20 19 18 28 28 H 1.08999 * 109.47285 * 299.99935 * 1 2 3 29 29 H 1.08996 * 109.47200 * 60.00256 * 1 2 3 30 30 H 1.09004 * 109.46789 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47285 * 240.00065 * 2 1 3 32 32 H 1.08996 * 109.47200 * 119.99744 * 2 1 3 33 33 H 0.97002 * 119.99909 * 180.02562 * 8 7 5 34 34 H 0.96999 * 119.99982 * 94.99202 * 13 3 2 35 35 H 1.08001 * 119.99881 * 359.95271 * 17 16 14 36 36 H 1.07996 * 119.89059 * 179.97438 * 18 17 16 37 37 H 1.08004 * 119.88524 * 180.28059 * 19 18 17 38 38 H 1.09004 * 110.24544 * 78.03878 * 22 21 20 39 39 H 1.09001 * 110.24579 * 316.04474 * 22 21 20 40 40 H 1.09004 * 110.96332 * 216.46372 * 23 22 21 41 41 H 1.08997 * 110.96828 * 92.70666 * 23 22 21 42 42 H 1.09004 * 110.48537 * 143.47948 * 24 23 22 43 43 H 1.09005 * 110.48973 * 266.11800 * 24 23 22 44 44 H 1.08001 * 120.10974 * 180.22973 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3376 -2.1733 9 14 6.0049 0.8802 -1.3810 10 1 6.5967 0.1455 -0.2342 11 1 6.3979 0.2158 -2.6497 12 1 6.5004 2.2801 -1.3807 13 7 1.6524 2.0976 1.2518 14 6 0.4350 2.6644 1.3670 15 8 -0.3412 2.6325 0.4321 16 6 0.0437 3.3250 2.6305 17 6 0.9335 3.3635 3.7057 18 6 0.5661 3.9810 4.8836 19 6 -0.6802 4.5679 5.0022 20 6 -1.5750 4.5303 3.9400 21 7 -2.8371 5.1216 4.0669 22 6 -3.3629 5.6919 5.3128 23 6 -4.8878 5.8150 5.0984 24 6 -4.9825 5.9173 3.5585 25 6 -3.7238 5.2395 3.0636 26 8 -3.5411 4.8585 1.9267 27 6 -1.2154 3.9123 2.7522 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0609 -2.9499 34 1 2.2718 2.1232 1.9978 35 1 1.9094 2.9096 3.6155 36 1 1.2556 4.0094 5.7143 37 1 -0.9605 5.0538 5.9251 38 1 -2.9265 6.6747 5.4914 39 1 -3.1521 5.0270 6.1504 40 1 -5.2770 6.7153 5.5740 41 1 -5.4058 4.9280 5.4631 42 1 -5.8663 5.3931 3.1950 43 1 -5.0016 6.9614 3.2460 44 1 -1.9081 3.8853 1.9241 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183809155.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:07 Heat of formation + Delta-G solvation = -40.579505 kcal Electronic energy + Delta-G solvation = -26179.382462 eV Core-core repulsion = 22482.588650 eV Total energy + Delta-G solvation = -3696.793812 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.24446 -39.45121 -37.90271 -36.76467 -34.98075 -33.48613 -32.30510 -31.30756 -30.49285 -29.09478 -28.06280 -26.90696 -24.10443 -23.28075 -22.78032 -21.99404 -20.42891 -19.80346 -19.16071 -18.08437 -17.10478 -16.70495 -16.41445 -15.86532 -15.33002 -15.22199 -14.71231 -14.47254 -14.19795 -14.08533 -13.94543 -13.78585 -13.46833 -13.30449 -12.97890 -12.66468 -12.60154 -12.04816 -11.90928 -11.67380 -11.58679 -11.49375 -11.37166 -11.19445 -10.95645 -10.78317 -10.35348 -10.28790 -10.11594 -9.74028 -9.57252 -9.03792 -8.97743 -8.86368 -8.45392 -8.03544 -7.75097 -6.08082 -4.17578 0.98741 1.34515 2.37461 2.54382 3.28177 3.33382 3.34460 3.40106 3.87190 3.97370 4.12429 4.25472 4.34468 4.40959 4.56136 4.83434 4.90638 4.99676 5.04308 5.22501 5.22854 5.24550 5.29510 5.35031 5.48985 5.49806 5.62699 5.93724 6.09813 6.33777 6.43164 6.46344 6.53900 6.57306 6.73776 6.88123 7.03851 7.11724 7.27648 7.43424 7.51012 7.66879 7.79213 7.86125 7.95657 8.22830 8.71577 8.82241 9.18567 9.49526 10.97300 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.024360 B = 0.002958 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.166169 B = 9462.460550 C =10124.936791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.701 5.701 14 C 0.539 3.461 15 O -0.537 6.537 16 C -0.091 4.091 17 C -0.113 4.113 18 C -0.101 4.101 19 C -0.145 4.145 20 C 0.151 3.849 21 N -0.561 5.561 22 C 0.096 3.904 23 C -0.131 4.131 24 C -0.153 4.153 25 C 0.508 3.492 26 O -0.496 6.496 27 C -0.103 4.103 28 H 0.038 0.962 29 H 0.050 0.950 30 H 0.022 0.978 31 H 0.099 0.901 32 H 0.031 0.969 33 H 0.265 0.735 34 H 0.387 0.613 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.170 10.989 20.067 26.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.349 5.349 14 C 0.324 3.676 15 O -0.415 6.415 16 C -0.095 4.095 17 C -0.133 4.133 18 C -0.119 4.119 19 C -0.166 4.166 20 C 0.058 3.942 21 N -0.286 5.286 22 C -0.026 4.026 23 C -0.169 4.169 24 C -0.193 4.193 25 C 0.297 3.703 26 O -0.369 6.369 27 C -0.124 4.124 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.118 0.882 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.221 0.779 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -13.606 10.643 18.535 25.337 hybrid contribution 1.399 0.013 0.456 1.471 sum -12.207 10.656 18.991 24.964 Atomic orbital electron populations 1.21849 0.98320 0.98044 1.01356 1.21932 0.92636 0.99723 1.02258 1.18814 0.94199 0.89221 0.80907 0.93165 1.21188 0.90664 1.39114 1.06331 0.92144 1.24884 0.98571 0.94829 0.95370 1.69887 1.35196 1.37505 1.09315 0.86515 0.84905 0.78287 0.77423 1.20181 1.21143 1.20196 1.46441 1.14292 1.55593 1.18580 1.18124 0.83090 0.79547 0.86812 1.90766 1.51408 1.59589 1.39781 1.20253 0.94494 0.99627 0.95156 1.21394 0.99588 0.99555 0.92769 1.20829 0.95657 0.97728 0.97701 1.20815 0.94216 1.03710 0.97855 1.17642 0.84395 0.96859 0.95297 1.45780 1.14199 1.56328 1.12309 1.22239 0.94385 0.99550 0.86448 1.22618 0.94693 1.04299 0.95273 1.22344 0.97151 1.03276 0.96503 1.21157 0.85760 0.78878 0.84549 1.90752 1.79078 1.48240 1.18861 1.21748 0.97160 0.95772 0.97723 0.94280 0.93080 0.95845 0.88250 0.95031 0.92506 0.77942 0.85192 0.85194 0.85749 0.90160 0.89522 0.88636 0.89575 0.87451 0.87329 0.81555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.51 37.16 0.32 -2.97 16 2 C -0.13 -3.20 5.45 -26.73 -0.15 -3.34 16 3 C 0.27 7.04 2.24 -69.09 -0.15 6.89 16 4 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 5 C -0.53 -14.38 8.73 -34.44 -0.30 -14.68 16 6 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -25.16 11.29 55.43 0.63 -24.53 16 9 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 13 N -0.70 -15.39 4.97 -55.88 -0.28 -15.67 16 14 C 0.54 11.90 6.34 -12.32 -0.08 11.83 16 15 O -0.54 -13.84 13.48 5.32 0.07 -13.77 16 16 C -0.09 -1.64 5.87 -104.99 -0.62 -2.26 16 17 C -0.11 -1.60 9.54 -39.16 -0.37 -1.98 16 18 C -0.10 -1.13 10.02 -39.67 -0.40 -1.52 16 19 C -0.15 -1.58 9.40 -39.31 -0.37 -1.95 16 20 C 0.15 2.08 6.59 -83.74 -0.55 1.53 16 21 N -0.56 -6.28 3.14 -112.30 -0.35 -6.64 16 22 C 0.10 0.56 6.26 -3.12 -0.02 0.54 16 23 C -0.13 -0.52 7.18 -25.10 -0.18 -0.70 16 24 C -0.15 -1.03 6.86 -26.75 -0.18 -1.21 16 25 C 0.51 6.39 7.92 -10.86 -0.09 6.31 16 26 O -0.50 -8.81 14.81 5.55 0.08 -8.73 16 27 C -0.10 -1.83 8.83 -38.98 -0.34 -2.18 16 28 H 0.04 0.92 5.64 -51.93 -0.29 0.62 16 29 H 0.05 1.29 7.84 -51.93 -0.41 0.88 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.10 2.74 5.95 -51.93 -0.31 2.43 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.39 7.33 6.57 -40.82 -0.27 7.06 16 35 H 0.13 1.64 6.40 -52.49 -0.34 1.31 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.12 0.93 7.01 -52.48 -0.37 0.56 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.39 7.71 -51.93 -0.40 -0.01 16 40 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 41 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.17 3.47 4.85 -52.49 -0.25 3.22 16 LS Contribution 354.23 15.07 5.34 5.34 Total: -1.00 -34.97 354.23 -9.06 -44.03 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.95 Total: 8.10 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -3.58 Total: -3.99 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.00 Total: -46.84 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: 0.15 Total: -22.50 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.97 -9.06 -44.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183809155.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.453 kcal (2) G-P(sol) polarization free energy of solvation -34.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds