Wall clock time and date at job start Tue Mar 31 2020 11:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46993 * 2 1 4 4 H 1.09002 * 109.46801 * 305.00249 * 3 2 1 5 5 C 1.50691 * 109.47338 * 184.99836 * 3 2 1 6 6 H 1.08003 * 120.00469 * 240.00298 * 5 3 2 7 7 C 1.37884 * 119.99862 * 59.99993 * 5 3 2 8 8 N 1.31507 * 119.99875 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99804 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47379 * 59.99940 * 9 7 5 11 11 H 1.48504 * 109.46888 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47252 * 299.99966 * 9 7 5 13 13 N 1.46500 * 109.47400 * 64.99772 * 3 2 1 14 14 C 1.34778 * 120.00281 * 275.00742 * 13 3 2 15 15 O 1.21554 * 119.99927 * 359.97438 * 14 13 3 16 16 C 1.47858 * 120.00134 * 179.97438 * 14 13 3 17 17 C 1.39619 * 120.11296 * 0.02562 * 16 14 13 18 18 C 1.37978 * 119.99815 * 179.97438 * 17 16 14 19 19 C 1.38260 * 120.21839 * 359.73941 * 18 17 16 20 20 C 1.38945 * 120.22760 * 0.51957 * 19 18 17 21 21 N 1.39951 * 120.00458 * 179.76640 * 20 19 18 22 22 C 1.46765 * 124.34728 * 353.90981 * 21 20 19 23 23 C 1.54482 * 105.47369 * 197.04189 * 22 21 20 24 24 C 1.54620 * 101.76422 * 334.58535 * 23 22 21 25 25 C 1.34417 * 124.35425 * 173.93960 * 21 20 19 26 26 O 1.21286 * 124.93856 * 359.53552 * 25 21 20 27 27 C 1.38642 * 119.99818 * 359.47827 * 20 19 18 28 28 H 1.08999 * 109.47285 * 299.99935 * 1 2 3 29 29 H 1.08996 * 109.47200 * 60.00256 * 1 2 3 30 30 H 1.09004 * 109.46789 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47285 * 240.00065 * 2 1 3 32 32 H 1.08996 * 109.47200 * 119.99744 * 2 1 3 33 33 H 0.97002 * 119.99909 * 180.02562 * 8 7 5 34 34 H 0.96999 * 119.99982 * 94.99202 * 13 3 2 35 35 H 1.08001 * 119.99881 * 359.95271 * 17 16 14 36 36 H 1.07996 * 119.89059 * 179.97438 * 18 17 16 37 37 H 1.08004 * 119.88524 * 180.28059 * 19 18 17 38 38 H 1.09004 * 110.24544 * 78.03878 * 22 21 20 39 39 H 1.09001 * 110.24579 * 316.04474 * 22 21 20 40 40 H 1.09004 * 110.96332 * 216.46372 * 23 22 21 41 41 H 1.08997 * 110.96828 * 92.70666 * 23 22 21 42 42 H 1.09004 * 110.48537 * 143.47948 * 24 23 22 43 43 H 1.09005 * 110.48973 * 266.11800 * 24 23 22 44 44 H 1.08001 * 120.10974 * 180.22973 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3376 -2.1733 9 14 6.0049 0.8802 -1.3810 10 1 6.5967 0.1455 -0.2342 11 1 6.3979 0.2158 -2.6497 12 1 6.5004 2.2801 -1.3807 13 7 1.6524 2.0976 1.2518 14 6 0.4350 2.6644 1.3670 15 8 -0.3412 2.6325 0.4321 16 6 0.0437 3.3250 2.6305 17 6 0.9335 3.3635 3.7057 18 6 0.5661 3.9810 4.8836 19 6 -0.6802 4.5679 5.0022 20 6 -1.5750 4.5303 3.9400 21 7 -2.8371 5.1216 4.0669 22 6 -3.3629 5.6919 5.3128 23 6 -4.8878 5.8150 5.0984 24 6 -4.9825 5.9173 3.5585 25 6 -3.7238 5.2395 3.0636 26 8 -3.5411 4.8585 1.9267 27 6 -1.2154 3.9123 2.7522 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0609 -2.9499 34 1 2.2718 2.1232 1.9978 35 1 1.9094 2.9096 3.6155 36 1 1.2556 4.0094 5.7143 37 1 -0.9605 5.0538 5.9251 38 1 -2.9265 6.6747 5.4914 39 1 -3.1521 5.0270 6.1504 40 1 -5.2770 6.7153 5.5740 41 1 -5.4058 4.9280 5.4631 42 1 -5.8663 5.3931 3.1950 43 1 -5.0016 6.9614 3.2460 44 1 -1.9081 3.8853 1.9241 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183809155.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:06 Heat of formation + Delta-G solvation = -64.797231 kcal Electronic energy + Delta-G solvation = -26180.432621 eV Core-core repulsion = 22482.588650 eV Total energy + Delta-G solvation = -3697.843971 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.13250 -40.98049 -39.21250 -37.70084 -36.96208 -34.60921 -34.01619 -32.97131 -31.91892 -30.10993 -28.96280 -28.60089 -25.58170 -24.65973 -24.07569 -22.96024 -21.71765 -21.36546 -20.70653 -19.34257 -18.27610 -17.81865 -17.51989 -17.30166 -17.05902 -16.42636 -16.26575 -16.19433 -15.49438 -15.01968 -14.85626 -14.79996 -14.61995 -14.54816 -14.44220 -14.00896 -13.71694 -13.52051 -13.30227 -13.21145 -12.93372 -12.81006 -12.65991 -12.65197 -12.30304 -12.21374 -12.10709 -11.98470 -11.64561 -11.17521 -11.10685 -10.83511 -10.73553 -10.54854 -10.05045 -9.67770 -9.01118 -8.17374 -6.35968 -0.17238 0.24649 1.43091 1.43954 1.46913 1.54619 1.76188 2.02229 2.33248 2.56960 2.90729 3.11823 3.27526 3.55182 3.80825 3.94702 4.01047 4.10312 4.14184 4.21251 4.36950 4.42186 4.49724 4.50600 4.62107 4.65804 4.70513 4.81125 4.93880 5.00857 5.08642 5.10776 5.18326 5.19922 5.33292 5.37567 5.41521 5.45317 5.50948 5.57568 5.74089 5.89005 5.96505 6.05610 6.11957 6.70644 6.91081 6.96018 7.30000 7.50181 8.88430 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.024360 B = 0.002958 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.166169 B = 9462.460550 C =10124.936791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.118 4.118 3 C 0.277 3.723 4 H -0.007 1.007 5 C -0.550 4.550 6 H 0.075 0.925 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.975 3.025 10 H -0.261 1.261 11 H -0.286 1.286 12 H -0.271 1.271 13 N -0.694 5.694 14 C 0.534 3.466 15 O -0.589 6.589 16 C -0.121 4.121 17 C -0.113 4.113 18 C -0.084 4.084 19 C -0.118 4.118 20 C 0.145 3.855 21 N -0.563 5.563 22 C 0.085 3.915 23 C -0.116 4.116 24 C -0.145 4.145 25 C 0.486 3.514 26 O -0.567 6.567 27 C -0.138 4.138 28 H 0.036 0.964 29 H 0.021 0.979 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.266 0.734 34 H 0.404 0.596 35 H 0.144 0.856 36 H 0.180 0.820 37 H 0.176 0.824 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.132 0.868 41 H 0.093 0.907 42 H 0.111 0.889 43 H 0.126 0.874 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.275 12.542 25.539 30.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.157 4.157 3 C 0.174 3.826 4 H 0.011 0.989 5 C -0.588 4.588 6 H 0.093 0.907 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.799 3.201 10 H -0.185 1.185 11 H -0.212 1.212 12 H -0.196 1.196 13 N -0.343 5.343 14 C 0.322 3.678 15 O -0.472 6.472 16 C -0.125 4.125 17 C -0.133 4.133 18 C -0.102 4.102 19 C -0.139 4.139 20 C 0.050 3.950 21 N -0.287 5.287 22 C -0.035 4.035 23 C -0.153 4.153 24 C -0.185 4.185 25 C 0.277 3.723 26 O -0.446 6.446 27 C -0.159 4.159 28 H 0.055 0.945 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.240 0.760 35 H 0.161 0.839 36 H 0.197 0.803 37 H 0.194 0.806 38 H 0.123 0.877 39 H 0.128 0.872 40 H 0.150 0.850 41 H 0.111 0.889 42 H 0.129 0.871 43 H 0.144 0.856 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.714 12.222 24.108 29.870 hybrid contribution 1.029 -0.390 -1.173 1.609 sum -11.685 11.832 22.935 28.329 Atomic orbital electron populations 1.21683 0.97512 0.99116 0.99841 1.21777 0.93230 0.99100 1.01603 1.18429 0.94054 0.89150 0.80960 0.98892 1.21525 0.90940 1.39298 1.07033 0.90710 1.25844 1.03747 0.94204 0.94828 1.70057 1.37362 1.38194 1.09864 0.85351 0.78517 0.78487 0.77694 1.18509 1.21171 1.19645 1.46156 1.14878 1.55490 1.17798 1.18877 0.82221 0.78697 0.87983 1.90728 1.52805 1.61490 1.42161 1.19885 0.96049 1.02114 0.94439 1.21598 0.99248 0.99787 0.92661 1.21385 0.96335 0.95109 0.97354 1.21384 0.92904 1.01442 0.98146 1.17816 0.86289 0.96306 0.94553 1.46142 1.13096 1.55343 1.14085 1.22747 0.95447 1.00897 0.84378 1.22697 0.93652 1.06467 0.92500 1.22425 0.93842 1.03327 0.98900 1.22385 0.87786 0.78162 0.83926 1.90727 1.80678 1.51208 1.22002 1.21511 0.96839 0.98717 0.98863 0.94530 0.95932 0.93207 0.90614 0.93618 0.92516 0.75966 0.83866 0.80295 0.80633 0.87736 0.87246 0.85001 0.88875 0.87117 0.85615 0.86065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.27 8.51 71.98 0.61 -5.66 16 2 C -0.12 -6.26 5.45 30.60 0.17 -6.09 16 3 C 0.28 15.32 2.24 44.24 0.10 15.42 16 4 H -0.01 -0.45 7.58 -2.39 -0.02 -0.47 16 5 C -0.55 -30.26 8.73 25.60 0.22 -30.04 16 6 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 7 C 0.01 0.77 5.29 84.66 0.45 1.22 16 8 N -0.92 -54.37 11.29 21.45 0.24 -54.13 16 9 Si 0.98 42.98 29.54 68.60 2.03 45.01 16 10 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 11 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 13 N -0.69 -32.02 4.97 -448.97 -2.23 -34.25 16 14 C 0.53 25.50 6.34 86.79 0.55 26.05 16 15 O -0.59 -33.85 13.48 -3.88 -0.05 -33.91 16 16 C -0.12 -4.57 5.87 -20.10 -0.12 -4.69 16 17 C -0.11 -3.01 9.54 22.54 0.21 -2.79 16 18 C -0.08 -1.47 10.02 22.21 0.22 -1.25 16 19 C -0.12 -2.03 9.40 22.44 0.21 -1.82 16 20 C 0.14 3.84 6.59 38.11 0.25 4.09 16 21 N -0.56 -11.86 3.14 -627.81 -1.97 -13.83 16 22 C 0.08 0.60 6.26 86.83 0.54 1.14 16 23 C -0.12 -0.42 7.18 31.65 0.23 -0.19 16 24 C -0.15 -1.75 6.86 30.58 0.21 -1.54 16 25 C 0.49 12.75 7.92 87.90 0.70 13.44 16 26 O -0.57 -22.64 14.81 -3.05 -0.05 -22.69 16 27 C -0.14 -5.26 8.83 22.66 0.20 -5.06 16 28 H 0.04 1.83 5.64 -2.39 -0.01 1.82 16 29 H 0.02 1.21 7.84 -2.39 -0.02 1.19 16 30 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 31 H 0.08 4.40 5.95 -2.39 -0.01 4.38 16 32 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 34 H 0.40 15.49 6.57 -92.71 -0.61 14.88 16 35 H 0.14 3.31 6.40 -2.91 -0.02 3.29 16 36 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 37 H 0.18 1.27 7.01 -2.91 -0.02 1.25 16 38 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.11 0.33 7.71 -2.39 -0.02 0.31 16 40 H 0.13 -0.37 8.14 -2.39 -0.02 -0.39 16 41 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.13 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.12 5.79 4.85 -2.91 -0.01 5.77 16 Total: -1.00 -88.91 354.23 3.15 -85.76 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.42 Total: 25.81 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 4.76 Total: 2.22 kcal Atomic # 7 Polarization: -98.25 SS G_CDS: -3.96 Total: -102.21 kcal Atomic # 8 Polarization: -56.50 SS G_CDS: -0.10 Total: -56.59 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -88.91 3.15 -85.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183809155.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.959 kcal (2) G-P(sol) polarization free energy of solvation -88.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds