Wall clock time and date at job start Tue Mar 31 2020 11:01:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53001 * 109.46993 * 2 1
4 4 H 1.09002 * 109.46801 * 305.00249 * 3 2 1
5 5 C 1.50691 * 109.47338 * 184.99836 * 3 2 1
6 6 H 1.08003 * 120.00469 * 240.00298 * 5 3 2
7 7 C 1.37884 * 119.99862 * 59.99993 * 5 3 2
8 8 N 1.31507 * 119.99875 * 0.02562 * 7 5 3
9 9 Si 1.86799 * 119.99804 * 180.02562 * 7 5 3
10 10 H 1.48500 * 109.47379 * 59.99940 * 9 7 5
11 11 H 1.48504 * 109.46888 * 179.97438 * 9 7 5
12 12 H 1.48496 * 109.47252 * 299.99966 * 9 7 5
13 13 N 1.46500 * 109.47400 * 64.99772 * 3 2 1
14 14 C 1.34778 * 120.00281 * 275.00742 * 13 3 2
15 15 O 1.21554 * 119.99927 * 359.97438 * 14 13 3
16 16 C 1.47858 * 120.00134 * 179.97438 * 14 13 3
17 17 C 1.39619 * 120.11296 * 0.02562 * 16 14 13
18 18 C 1.37978 * 119.99815 * 179.97438 * 17 16 14
19 19 C 1.38260 * 120.21839 * 359.73941 * 18 17 16
20 20 C 1.38945 * 120.22760 * 0.51957 * 19 18 17
21 21 N 1.39951 * 120.00458 * 179.76640 * 20 19 18
22 22 C 1.46765 * 124.34728 * 353.90981 * 21 20 19
23 23 C 1.54482 * 105.47369 * 197.04189 * 22 21 20
24 24 C 1.54620 * 101.76422 * 334.58535 * 23 22 21
25 25 C 1.34417 * 124.35425 * 173.93960 * 21 20 19
26 26 O 1.21286 * 124.93856 * 359.53552 * 25 21 20
27 27 C 1.38642 * 119.99818 * 359.47827 * 20 19 18
28 28 H 1.08999 * 109.47285 * 299.99935 * 1 2 3
29 29 H 1.08996 * 109.47200 * 60.00256 * 1 2 3
30 30 H 1.09004 * 109.46789 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.47285 * 240.00065 * 2 1 3
32 32 H 1.08996 * 109.47200 * 119.99744 * 2 1 3
33 33 H 0.97002 * 119.99909 * 180.02562 * 8 7 5
34 34 H 0.96999 * 119.99982 * 94.99202 * 13 3 2
35 35 H 1.08001 * 119.99881 * 359.95271 * 17 16 14
36 36 H 1.07996 * 119.89059 * 179.97438 * 18 17 16
37 37 H 1.08004 * 119.88524 * 180.28059 * 19 18 17
38 38 H 1.09004 * 110.24544 * 78.03878 * 22 21 20
39 39 H 1.09001 * 110.24579 * 316.04474 * 22 21 20
40 40 H 1.09004 * 110.96332 * 216.46372 * 23 22 21
41 41 H 1.08997 * 110.96828 * 92.70666 * 23 22 21
42 42 H 1.09004 * 110.48537 * 143.47948 * 24 23 22
43 43 H 1.09005 * 110.48973 * 266.11800 * 24 23 22
44 44 H 1.08001 * 120.10974 * 180.22973 * 27 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6053 1.9815 -0.8418
5 6 3.5418 1.4444 -0.1238
6 1 4.1471 1.8890 0.6524
7 6 4.1432 0.8785 -1.2280
8 7 3.4062 0.3376 -2.1733
9 14 6.0049 0.8802 -1.3810
10 1 6.5967 0.1455 -0.2342
11 1 6.3979 0.2158 -2.6497
12 1 6.5004 2.2801 -1.3807
13 7 1.6524 2.0976 1.2518
14 6 0.4350 2.6644 1.3670
15 8 -0.3412 2.6325 0.4321
16 6 0.0437 3.3250 2.6305
17 6 0.9335 3.3635 3.7057
18 6 0.5661 3.9810 4.8836
19 6 -0.6802 4.5679 5.0022
20 6 -1.5750 4.5303 3.9400
21 7 -2.8371 5.1216 4.0669
22 6 -3.3629 5.6919 5.3128
23 6 -4.8878 5.8150 5.0984
24 6 -4.9825 5.9173 3.5585
25 6 -3.7238 5.2395 3.0636
26 8 -3.5411 4.8585 1.9267
27 6 -1.2154 3.9123 2.7522
28 1 -0.3634 0.5138 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 1.8934 -0.5138 -0.8900
32 1 1.8934 -0.5138 0.8900
33 1 3.8293 -0.0609 -2.9499
34 1 2.2718 2.1232 1.9978
35 1 1.9094 2.9096 3.6155
36 1 1.2556 4.0094 5.7143
37 1 -0.9605 5.0538 5.9251
38 1 -2.9265 6.6747 5.4914
39 1 -3.1521 5.0270 6.1504
40 1 -5.2770 6.7153 5.5740
41 1 -5.4058 4.9280 5.4631
42 1 -5.8663 5.3931 3.1950
43 1 -5.0016 6.9614 3.2460
44 1 -1.9081 3.8853 1.9241
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000183809155.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:01:06
Heat of formation + Delta-G solvation = -64.797231 kcal
Electronic energy + Delta-G solvation = -26180.432621 eV
Core-core repulsion = 22482.588650 eV
Total energy + Delta-G solvation = -3697.843971 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-42.13250 -40.98049 -39.21250 -37.70084 -36.96208 -34.60921 -34.01619 -32.97131
-31.91892 -30.10993 -28.96280 -28.60089 -25.58170 -24.65973 -24.07569 -22.96024
-21.71765 -21.36546 -20.70653 -19.34257 -18.27610 -17.81865 -17.51989 -17.30166
-17.05902 -16.42636 -16.26575 -16.19433 -15.49438 -15.01968 -14.85626 -14.79996
-14.61995 -14.54816 -14.44220 -14.00896 -13.71694 -13.52051 -13.30227 -13.21145
-12.93372 -12.81006 -12.65991 -12.65197 -12.30304 -12.21374 -12.10709 -11.98470
-11.64561 -11.17521 -11.10685 -10.83511 -10.73553 -10.54854 -10.05045 -9.67770
-9.01118 -8.17374 -6.35968 -0.17238 0.24649 1.43091 1.43954 1.46913
1.54619 1.76188 2.02229 2.33248 2.56960 2.90729 3.11823 3.27526
3.55182 3.80825 3.94702 4.01047 4.10312 4.14184 4.21251 4.36950
4.42186 4.49724 4.50600 4.62107 4.65804 4.70513 4.81125 4.93880
5.00857 5.08642 5.10776 5.18326 5.19922 5.33292 5.37567 5.41521
5.45317 5.50948 5.57568 5.74089 5.89005 5.96505 6.05610 6.11957
6.70644 6.91081 6.96018 7.30000 7.50181 8.88430
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.024360 B = 0.002958 C = 0.002765
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1149.166169 B = 9462.460550 C =10124.936791
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C -0.118 4.118
3 C 0.277 3.723
4 H -0.007 1.007
5 C -0.550 4.550
6 H 0.075 0.925
7 C 0.014 3.986
8 N -0.917 5.917
9 Si 0.975 3.025
10 H -0.261 1.261
11 H -0.286 1.286
12 H -0.271 1.271
13 N -0.694 5.694
14 C 0.534 3.466
15 O -0.589 6.589
16 C -0.121 4.121
17 C -0.113 4.113
18 C -0.084 4.084
19 C -0.118 4.118
20 C 0.145 3.855
21 N -0.563 5.563
22 C 0.085 3.915
23 C -0.116 4.116
24 C -0.145 4.145
25 C 0.486 3.514
26 O -0.567 6.567
27 C -0.138 4.138
28 H 0.036 0.964
29 H 0.021 0.979
30 H 0.049 0.951
31 H 0.076 0.924
32 H 0.045 0.955
33 H 0.266 0.734
34 H 0.404 0.596
35 H 0.144 0.856
36 H 0.180 0.820
37 H 0.176 0.824
38 H 0.105 0.895
39 H 0.109 0.891
40 H 0.132 0.868
41 H 0.093 0.907
42 H 0.111 0.889
43 H 0.126 0.874
44 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.275 12.542 25.539 30.988
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C -0.157 4.157
3 C 0.174 3.826
4 H 0.011 0.989
5 C -0.588 4.588
6 H 0.093 0.907
7 C -0.186 4.186
8 N -0.555 5.555
9 Si 0.799 3.201
10 H -0.185 1.185
11 H -0.212 1.212
12 H -0.196 1.196
13 N -0.343 5.343
14 C 0.322 3.678
15 O -0.472 6.472
16 C -0.125 4.125
17 C -0.133 4.133
18 C -0.102 4.102
19 C -0.139 4.139
20 C 0.050 3.950
21 N -0.287 5.287
22 C -0.035 4.035
23 C -0.153 4.153
24 C -0.185 4.185
25 C 0.277 3.723
26 O -0.446 6.446
27 C -0.159 4.159
28 H 0.055 0.945
29 H 0.041 0.959
30 H 0.068 0.932
31 H 0.094 0.906
32 H 0.064 0.936
33 H 0.075 0.925
34 H 0.240 0.760
35 H 0.161 0.839
36 H 0.197 0.803
37 H 0.194 0.806
38 H 0.123 0.877
39 H 0.128 0.872
40 H 0.150 0.850
41 H 0.111 0.889
42 H 0.129 0.871
43 H 0.144 0.856
44 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges -12.714 12.222 24.108 29.870
hybrid contribution 1.029 -0.390 -1.173 1.609
sum -11.685 11.832 22.935 28.329
Atomic orbital electron populations
1.21683 0.97512 0.99116 0.99841 1.21777 0.93230 0.99100 1.01603
1.18429 0.94054 0.89150 0.80960 0.98892 1.21525 0.90940 1.39298
1.07033 0.90710 1.25844 1.03747 0.94204 0.94828 1.70057 1.37362
1.38194 1.09864 0.85351 0.78517 0.78487 0.77694 1.18509 1.21171
1.19645 1.46156 1.14878 1.55490 1.17798 1.18877 0.82221 0.78697
0.87983 1.90728 1.52805 1.61490 1.42161 1.19885 0.96049 1.02114
0.94439 1.21598 0.99248 0.99787 0.92661 1.21385 0.96335 0.95109
0.97354 1.21384 0.92904 1.01442 0.98146 1.17816 0.86289 0.96306
0.94553 1.46142 1.13096 1.55343 1.14085 1.22747 0.95447 1.00897
0.84378 1.22697 0.93652 1.06467 0.92500 1.22425 0.93842 1.03327
0.98900 1.22385 0.87786 0.78162 0.83926 1.90727 1.80678 1.51208
1.22002 1.21511 0.96839 0.98717 0.98863 0.94530 0.95932 0.93207
0.90614 0.93618 0.92516 0.75966 0.83866 0.80295 0.80633 0.87736
0.87246 0.85001 0.88875 0.87117 0.85615 0.86065
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -6.27 8.51 71.98 0.61 -5.66 16
2 C -0.12 -6.26 5.45 30.60 0.17 -6.09 16
3 C 0.28 15.32 2.24 44.24 0.10 15.42 16
4 H -0.01 -0.45 7.58 -2.39 -0.02 -0.47 16
5 C -0.55 -30.26 8.73 25.60 0.22 -30.04 16
6 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16
7 C 0.01 0.77 5.29 84.66 0.45 1.22 16
8 N -0.92 -54.37 11.29 21.45 0.24 -54.13 16
9 Si 0.98 42.98 29.54 68.60 2.03 45.01 16
10 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16
11 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16
12 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16
13 N -0.69 -32.02 4.97 -448.97 -2.23 -34.25 16
14 C 0.53 25.50 6.34 86.79 0.55 26.05 16
15 O -0.59 -33.85 13.48 -3.88 -0.05 -33.91 16
16 C -0.12 -4.57 5.87 -20.10 -0.12 -4.69 16
17 C -0.11 -3.01 9.54 22.54 0.21 -2.79 16
18 C -0.08 -1.47 10.02 22.21 0.22 -1.25 16
19 C -0.12 -2.03 9.40 22.44 0.21 -1.82 16
20 C 0.14 3.84 6.59 38.11 0.25 4.09 16
21 N -0.56 -11.86 3.14 -627.81 -1.97 -13.83 16
22 C 0.08 0.60 6.26 86.83 0.54 1.14 16
23 C -0.12 -0.42 7.18 31.65 0.23 -0.19 16
24 C -0.15 -1.75 6.86 30.58 0.21 -1.54 16
25 C 0.49 12.75 7.92 87.90 0.70 13.44 16
26 O -0.57 -22.64 14.81 -3.05 -0.05 -22.69 16
27 C -0.14 -5.26 8.83 22.66 0.20 -5.06 16
28 H 0.04 1.83 5.64 -2.39 -0.01 1.82 16
29 H 0.02 1.21 7.84 -2.39 -0.02 1.19 16
30 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16
31 H 0.08 4.40 5.95 -2.39 -0.01 4.38 16
32 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16
33 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16
34 H 0.40 15.49 6.57 -92.71 -0.61 14.88 16
35 H 0.14 3.31 6.40 -2.91 -0.02 3.29 16
36 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16
37 H 0.18 1.27 7.01 -2.91 -0.02 1.25 16
38 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16
39 H 0.11 0.33 7.71 -2.39 -0.02 0.31 16
40 H 0.13 -0.37 8.14 -2.39 -0.02 -0.39 16
41 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16
42 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16
43 H 0.13 1.08 8.14 -2.38 -0.02 1.06 16
44 H 0.12 5.79 4.85 -2.91 -0.01 5.77 16
Total: -1.00 -88.91 354.23 3.15 -85.76
By element:
Atomic # 1 Polarization: 25.39 SS G_CDS: 0.42 Total: 25.81 kcal
Atomic # 6 Polarization: -2.54 SS G_CDS: 4.76 Total: 2.22 kcal
Atomic # 7 Polarization: -98.25 SS G_CDS: -3.96 Total: -102.21 kcal
Atomic # 8 Polarization: -56.50 SS G_CDS: -0.10 Total: -56.59 kcal
Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal
Total: -88.91 3.15 -85.76 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000183809155.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.959 kcal
(2) G-P(sol) polarization free energy of solvation -88.906 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.947 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.756 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.797 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds