Wall clock time and date at job start Tue Mar 31 2020 11:01:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 C 1.53001 * 109.47245 * 2 1
4 4 H 1.09003 * 109.46990 * 54.43975 * 3 2 1
5 5 C 1.50700 * 109.47625 * 174.43921 * 3 2 1
6 6 H 1.07997 * 120.00012 * 114.24889 * 5 3 2
7 7 C 1.37883 * 119.99850 * 294.25779 * 5 3 2
8 8 N 1.31511 * 119.99801 * 159.51369 * 7 5 3
9 9 Si 1.86799 * 119.99902 * 339.51863 * 7 5 3
10 10 H 1.48504 * 109.46641 * 269.99967 * 9 7 5
11 11 H 1.48499 * 109.47480 * 29.99846 * 9 7 5
12 12 H 1.48497 * 109.47183 * 150.00437 * 9 7 5
13 13 N 1.46500 * 109.46952 * 294.44278 * 3 2 1
14 14 C 1.34771 * 120.00338 * 84.99870 * 13 3 2
15 15 O 1.21582 * 120.00070 * 359.97438 * 14 13 3
16 16 C 1.47600 * 120.00121 * 180.02562 * 14 13 3
17 17 C 1.39750 * 120.07380 * 359.72375 * 16 14 13
18 18 C 1.37670 * 119.92335 * 179.76288 * 17 16 14
19 19 C 1.39129 * 120.07358 * 0.49206 * 18 17 16
20 20 N 1.39445 * 119.92395 * 179.74354 * 19 18 17
21 21 C 1.34781 * 120.00051 * 211.91880 * 20 19 18
22 22 O 1.21283 * 119.99759 * 5.03492 * 21 20 19
23 23 C 1.50689 * 120.00379 * 185.02949 * 21 20 19
24 24 C 1.52993 * 117.50455 * 248.74988 * 23 21 20
25 25 C 1.53001 * 117.50181 * 180.08486 * 23 21 20
26 26 C 1.39129 * 120.15021 * 359.75989 * 19 18 17
27 27 C 1.37667 * 120.07518 * 0.02562 * 26 19 18
28 28 H 1.08996 * 109.47682 * 299.99872 * 1 2 3
29 29 H 1.09005 * 109.47287 * 60.00474 * 1 2 3
30 30 H 1.09004 * 109.47165 * 180.02562 * 1 2 3
31 31 H 1.09005 * 109.47630 * 239.99890 * 2 1 3
32 32 H 1.09005 * 109.47287 * 119.99525 * 2 1 3
33 33 H 0.96998 * 120.00236 * 354.93529 * 8 7 5
34 34 H 0.97002 * 119.99601 * 264.99329 * 13 3 2
35 35 H 1.07999 * 120.03238 * 359.97438 * 17 16 14
36 36 H 1.07998 * 119.95740 * 180.22773 * 18 17 16
37 37 H 0.96994 * 120.00298 * 31.91251 * 20 19 18
38 38 H 1.09001 * 115.54953 * 34.41796 * 23 21 20
39 39 H 1.08997 * 117.50009 * 359.97438 * 24 23 21
40 40 H 1.09003 * 117.50385 * 145.01584 * 24 23 21
41 41 H 1.09001 * 117.50131 * 214.98329 * 25 23 21
42 42 H 1.08998 * 117.49740 * 359.97438 * 25 23 21
43 43 H 1.07998 * 119.96285 * 179.97438 * 26 19 18
44 44 H 1.07993 * 120.04130 * 179.97438 * 27 26 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.5976 1.9843 0.8360
5 6 3.5406 1.4448 0.1377
6 1 4.1568 1.8020 -0.6742
7 6 4.1270 0.9907 1.3001
8 7 5.3859 0.6104 1.2964
9 14 3.1331 0.9156 2.8799
10 1 3.2653 2.2023 3.6094
11 1 1.7042 0.6754 2.5549
12 1 3.6399 -0.1904 3.7314
13 7 1.6639 2.0934 -1.2574
14 6 0.4478 2.6599 -1.3857
15 8 -0.3375 2.6304 -0.4579
16 6 0.0687 3.3151 -2.6527
17 6 0.9718 3.3541 -3.7185
18 6 0.6132 3.9618 -4.9007
19 6 -0.6428 4.5457 -5.0314
20 7 -1.0008 5.1651 -6.2284
21 6 -1.8326 6.2255 -6.2160
22 8 -2.1972 6.6979 -5.1601
23 6 -2.3095 6.8243 -7.5140
24 6 -1.7987 8.2197 -7.8782
25 6 -3.2507 8.0279 -7.4331
26 6 -1.5424 4.5133 -3.9706
27 6 -1.1919 3.9034 -2.7872
28 1 -0.3634 0.5138 0.8899
29 1 -0.3634 0.5138 -0.8901
30 1 -0.3634 -1.0277 0.0005
31 1 1.8934 -0.5139 -0.8900
32 1 1.8933 -0.5138 0.8901
33 1 5.8808 0.5795 0.4628
34 1 2.2903 2.1167 -1.9977
35 1 1.9486 2.9050 -3.6160
36 1 1.3094 3.9890 -5.7259
37 1 -0.6511 4.8329 -7.0699
38 1 -2.4657 6.1172 -8.3286
39 1 -1.1179 8.7049 -7.1788
40 1 -1.6191 8.4307 -8.9324
41 1 -4.0259 8.1127 -8.1948
42 1 -3.5253 8.3863 -6.4411
43 1 -2.5164 4.9679 -4.0752
44 1 -1.8904 3.8790 -1.9639
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000183811295.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:01:29
Heat of formation + Delta-G solvation = -23.022360 kcal
Electronic energy + Delta-G solvation = -25491.576055 eV
Core-core repulsion = 21795.543578 eV
Total energy + Delta-G solvation = -3696.032477 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-41.00088 -39.65708 -38.26108 -36.57201 -35.32574 -34.89650 -32.52902 -31.67006
-30.90633 -29.82399 -27.19179 -25.52170 -23.11580 -22.99300 -22.88201 -22.21969
-20.61222 -20.42379 -19.49429 -18.34238 -17.96780 -17.68089 -16.72593 -15.79316
-15.75697 -15.28634 -14.97591 -14.91044 -14.54557 -14.08729 -13.74400 -13.49234
-13.27683 -13.05840 -12.95131 -12.78551 -12.43308 -12.32717 -12.16461 -12.04294
-11.67942 -11.27948 -11.13659 -11.07569 -10.77904 -10.68582 -10.57966 -10.44244
-10.18169 -9.85888 -9.68573 -9.23524 -9.08086 -9.03723 -8.31235 -8.30222
-8.00410 -6.57999 -4.20466 0.82349 1.35374 2.03867 2.57743 3.19736
3.37678 3.43202 3.47287 3.62890 3.99149 4.08222 4.14517 4.25954
4.35246 4.45510 4.56256 4.77095 4.84808 5.09734 5.14377 5.18537
5.22361 5.31080 5.36818 5.43265 5.49340 5.63380 5.95638 6.02897
6.10705 6.12437 6.12988 6.29597 6.33375 6.46745 6.73697 6.82119
6.85648 6.99053 6.99451 7.08405 7.39269 7.43404 7.68634 7.71377
8.25072 8.49679 8.71547 8.99651 9.46423 10.80695
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.029953 B = 0.002467 C = 0.002400
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 934.588937 B =11347.206088 C =11665.252043
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.128 4.128
3 C 0.247 3.753
4 H 0.045 0.955
5 C -0.622 4.622
6 H 0.062 0.938
7 C 0.044 3.956
8 N -0.894 5.894
9 Si 1.034 2.966
10 H -0.283 1.283
11 H -0.267 1.267
12 H -0.284 1.284
13 N -0.696 5.696
14 C 0.543 3.457
15 O -0.547 6.547
16 C -0.138 4.138
17 C -0.067 4.067
18 C -0.154 4.154
19 C 0.158 3.842
20 N -0.668 5.668
21 C 0.541 3.459
22 O -0.514 6.514
23 C -0.197 4.197
24 C -0.152 4.152
25 C -0.145 4.145
26 C -0.133 4.133
27 C -0.043 4.043
28 H 0.052 0.948
29 H 0.049 0.951
30 H 0.030 0.970
31 H 0.049 0.951
32 H 0.060 0.940
33 H 0.270 0.730
34 H 0.391 0.609
35 H 0.133 0.867
36 H 0.129 0.871
37 H 0.412 0.588
38 H 0.128 0.872
39 H 0.101 0.899
40 H 0.107 0.893
41 H 0.105 0.895
42 H 0.110 0.890
43 H 0.138 0.862
44 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.679 9.873 -21.857 27.610
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.167 4.167
3 C 0.144 3.856
4 H 0.063 0.937
5 C -0.659 4.659
6 H 0.080 0.920
7 C -0.163 4.163
8 N -0.526 5.526
9 Si 0.861 3.139
10 H -0.210 1.210
11 H -0.192 1.192
12 H -0.210 1.210
13 N -0.343 5.343
14 C 0.330 3.670
15 O -0.427 6.427
16 C -0.142 4.142
17 C -0.086 4.086
18 C -0.174 4.174
19 C 0.064 3.936
20 N -0.312 5.312
21 C 0.329 3.671
22 O -0.388 6.388
23 C -0.219 4.219
24 C -0.189 4.189
25 C -0.183 4.183
26 C -0.153 4.153
27 C -0.063 4.063
28 H 0.071 0.929
29 H 0.068 0.932
30 H 0.049 0.951
31 H 0.068 0.932
32 H 0.079 0.921
33 H 0.080 0.920
34 H 0.225 0.775
35 H 0.151 0.849
36 H 0.147 0.853
37 H 0.248 0.752
38 H 0.146 0.854
39 H 0.120 0.880
40 H 0.125 0.875
41 H 0.124 0.876
42 H 0.128 0.872
43 H 0.156 0.844
44 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -14.379 9.847 -18.833 25.660
hybrid contribution 0.628 0.086 -2.616 2.692
sum -13.751 9.933 -21.449 27.346
Atomic orbital electron populations
1.21897 0.97344 0.98839 1.02100 1.22201 0.93793 0.99636 1.01089
1.19141 0.95794 0.88577 0.82103 0.93739 1.22044 0.89689 1.49362
1.04822 0.92022 1.25642 0.96856 0.91978 1.01821 1.70833 1.10420
1.40336 1.31027 0.84188 0.76461 0.77413 0.75885 1.20969 1.19239
1.21000 1.46219 1.14343 1.55619 1.18164 1.18139 0.82836 0.79134
0.86936 1.90734 1.51011 1.60255 1.40722 1.20287 0.95855 1.02816
0.95192 1.21177 0.98984 0.96703 0.91769 1.20740 0.94429 1.03248
0.99023 1.17860 0.93401 0.95470 0.86907 1.43362 1.48028 1.31191
1.08616 1.19867 0.77831 0.79013 0.90427 1.90749 1.55495 1.60196
1.32398 1.22177 1.08874 0.93337 0.97475 1.23001 0.98171 0.94860
1.02887 1.23008 0.93119 0.97834 1.04312 1.21090 1.00038 1.01289
0.92892 1.21177 0.95267 0.92878 0.96947 0.92891 0.93224 0.95134
0.93188 0.92133 0.91988 0.77519 0.84943 0.85280 0.75186 0.85439
0.88035 0.87501 0.87634 0.87181 0.84382 0.84302
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.99 8.52 37.15 0.32 -2.68 16
2 C -0.13 -2.89 5.03 -26.73 -0.13 -3.03 16
3 C 0.25 5.95 1.78 -69.08 -0.12 5.83 16
4 H 0.04 1.17 6.00 -51.93 -0.31 0.86 16
5 C -0.62 -16.76 8.97 -34.44 -0.31 -17.07 16
6 H 0.06 1.73 7.96 -52.49 -0.42 1.31 16
7 C 0.04 1.24 5.25 -17.82 -0.09 1.15 16
8 N -0.89 -26.51 13.70 55.43 0.76 -25.75 16
9 Si 1.03 25.18 26.32 -169.99 -4.47 20.70 16
10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
11 H -0.27 -6.21 5.87 56.52 0.33 -5.88 16
12 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16
13 N -0.70 -14.30 4.98 -55.96 -0.28 -14.58 16
14 C 0.54 10.84 6.36 -12.44 -0.08 10.76 16
15 O -0.55 -12.47 13.47 5.29 0.07 -12.40 16
16 C -0.14 -2.23 5.88 -104.95 -0.62 -2.84 16
17 C -0.07 -0.88 9.53 -39.22 -0.37 -1.26 16
18 C -0.15 -1.69 9.94 -39.46 -0.39 -2.08 16
19 C 0.16 1.83 6.31 -83.73 -0.53 1.30 16
20 N -0.67 -5.66 5.32 -9.86 -0.05 -5.71 16
21 C 0.54 5.23 7.36 -10.99 -0.08 5.15 16
22 O -0.51 -7.06 13.81 5.56 0.08 -6.98 16
23 C -0.20 -1.18 6.19 -91.78 -0.57 -1.75 16
24 C -0.15 -0.78 10.24 -26.70 -0.27 -1.05 16
25 C -0.15 -0.85 10.05 -26.69 -0.27 -1.12 16
26 C -0.13 -1.81 8.63 -39.46 -0.34 -2.15 16
27 C -0.04 -0.66 9.58 -39.22 -0.38 -1.03 16
28 H 0.05 1.15 7.88 -51.93 -0.41 0.74 16
29 H 0.05 1.02 5.63 -51.93 -0.29 0.73 16
30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16
31 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16
32 H 0.06 1.41 5.61 -51.93 -0.29 1.12 16
33 H 0.27 7.90 8.73 -40.82 -0.36 7.54 16
34 H 0.39 7.11 6.55 -40.82 -0.27 6.84 16
35 H 0.13 1.58 6.39 -52.49 -0.34 1.24 16
36 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16
37 H 0.41 1.98 8.81 -40.82 -0.36 1.62 16
38 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16
39 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16
40 H 0.11 0.33 8.14 -51.93 -0.42 -0.10 16
41 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16
42 H 0.11 0.84 7.67 -51.93 -0.40 0.44 16
43 H 0.14 1.89 6.28 -52.49 -0.33 1.56 16
44 H 0.14 2.15 7.64 -52.49 -0.40 1.75 16
LS Contribution 359.35 15.07 5.42 5.42
Total: -1.00 -33.88 359.35 -8.72 -42.60
By element:
Atomic # 1 Polarization: 14.55 SS G_CDS: -5.99 Total: 8.56 kcal
Atomic # 6 Polarization: -7.62 SS G_CDS: -4.24 Total: -11.86 kcal
Atomic # 7 Polarization: -46.46 SS G_CDS: 0.43 Total: -46.03 kcal
Atomic # 8 Polarization: -19.53 SS G_CDS: 0.15 Total: -19.38 kcal
Atomic # 14 Polarization: 25.18 SS G_CDS: -4.47 Total: 20.70 kcal
Total LS contribution 5.42 Total: 5.42 kcal
Total: -33.88 -8.72 -42.60 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000183811295.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.575 kcal
(2) G-P(sol) polarization free energy of solvation -33.880 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.305 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.598 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.022 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds