Wall clock time and date at job start Tue Mar 31 2020 11:01:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 C 1.53001 * 109.47245 * 2 1
4 4 H 1.09003 * 109.46990 * 54.43975 * 3 2 1
5 5 C 1.50700 * 109.47625 * 174.43921 * 3 2 1
6 6 H 1.07997 * 120.00012 * 114.24889 * 5 3 2
7 7 C 1.37883 * 119.99850 * 294.25779 * 5 3 2
8 8 N 1.31511 * 119.99801 * 159.51369 * 7 5 3
9 9 Si 1.86799 * 119.99902 * 339.51863 * 7 5 3
10 10 H 1.48504 * 109.46641 * 269.99967 * 9 7 5
11 11 H 1.48499 * 109.47480 * 29.99846 * 9 7 5
12 12 H 1.48497 * 109.47183 * 150.00437 * 9 7 5
13 13 N 1.46500 * 109.46952 * 294.44278 * 3 2 1
14 14 C 1.34771 * 120.00338 * 84.99870 * 13 3 2
15 15 O 1.21582 * 120.00070 * 359.97438 * 14 13 3
16 16 C 1.47600 * 120.00121 * 180.02562 * 14 13 3
17 17 C 1.39750 * 120.07380 * 359.72375 * 16 14 13
18 18 C 1.37670 * 119.92335 * 179.76288 * 17 16 14
19 19 C 1.39129 * 120.07358 * 0.49206 * 18 17 16
20 20 N 1.39445 * 119.92395 * 179.74354 * 19 18 17
21 21 C 1.34781 * 120.00051 * 211.91880 * 20 19 18
22 22 O 1.21283 * 119.99759 * 5.03492 * 21 20 19
23 23 C 1.50689 * 120.00379 * 185.02949 * 21 20 19
24 24 C 1.52993 * 117.50455 * 248.74988 * 23 21 20
25 25 C 1.53001 * 117.50181 * 180.08486 * 23 21 20
26 26 C 1.39129 * 120.15021 * 359.75989 * 19 18 17
27 27 C 1.37667 * 120.07518 * 0.02562 * 26 19 18
28 28 H 1.08996 * 109.47682 * 299.99872 * 1 2 3
29 29 H 1.09005 * 109.47287 * 60.00474 * 1 2 3
30 30 H 1.09004 * 109.47165 * 180.02562 * 1 2 3
31 31 H 1.09005 * 109.47630 * 239.99890 * 2 1 3
32 32 H 1.09005 * 109.47287 * 119.99525 * 2 1 3
33 33 H 0.96998 * 120.00236 * 354.93529 * 8 7 5
34 34 H 0.97002 * 119.99601 * 264.99329 * 13 3 2
35 35 H 1.07999 * 120.03238 * 359.97438 * 17 16 14
36 36 H 1.07998 * 119.95740 * 180.22773 * 18 17 16
37 37 H 0.96994 * 120.00298 * 31.91251 * 20 19 18
38 38 H 1.09001 * 115.54953 * 34.41796 * 23 21 20
39 39 H 1.08997 * 117.50009 * 359.97438 * 24 23 21
40 40 H 1.09003 * 117.50385 * 145.01584 * 24 23 21
41 41 H 1.09001 * 117.50131 * 214.98329 * 25 23 21
42 42 H 1.08998 * 117.49740 * 359.97438 * 25 23 21
43 43 H 1.07998 * 119.96285 * 179.97438 * 26 19 18
44 44 H 1.07993 * 120.04130 * 179.97438 * 27 26 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.5976 1.9843 0.8360
5 6 3.5406 1.4448 0.1377
6 1 4.1568 1.8020 -0.6742
7 6 4.1270 0.9907 1.3001
8 7 5.3859 0.6104 1.2964
9 14 3.1331 0.9156 2.8799
10 1 3.2653 2.2023 3.6094
11 1 1.7042 0.6754 2.5549
12 1 3.6399 -0.1904 3.7314
13 7 1.6639 2.0934 -1.2574
14 6 0.4478 2.6599 -1.3857
15 8 -0.3375 2.6304 -0.4579
16 6 0.0687 3.3151 -2.6527
17 6 0.9718 3.3541 -3.7185
18 6 0.6132 3.9618 -4.9007
19 6 -0.6428 4.5457 -5.0314
20 7 -1.0008 5.1651 -6.2284
21 6 -1.8326 6.2255 -6.2160
22 8 -2.1972 6.6979 -5.1601
23 6 -2.3095 6.8243 -7.5140
24 6 -1.7987 8.2197 -7.8782
25 6 -3.2507 8.0279 -7.4331
26 6 -1.5424 4.5133 -3.9706
27 6 -1.1919 3.9034 -2.7872
28 1 -0.3634 0.5138 0.8899
29 1 -0.3634 0.5138 -0.8901
30 1 -0.3634 -1.0277 0.0005
31 1 1.8934 -0.5139 -0.8900
32 1 1.8933 -0.5138 0.8901
33 1 5.8808 0.5795 0.4628
34 1 2.2903 2.1167 -1.9977
35 1 1.9486 2.9050 -3.6160
36 1 1.3094 3.9890 -5.7259
37 1 -0.6511 4.8329 -7.0699
38 1 -2.4657 6.1172 -8.3286
39 1 -1.1179 8.7049 -7.1788
40 1 -1.6191 8.4307 -8.9324
41 1 -4.0259 8.1127 -8.1948
42 1 -3.5253 8.3863 -6.4411
43 1 -2.5164 4.9679 -4.0752
44 1 -1.8904 3.8790 -1.9639
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000183811295.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:01:29
Heat of formation + Delta-G solvation = -45.965374 kcal
Electronic energy + Delta-G solvation = -25492.570938 eV
Core-core repulsion = 21795.543578 eV
Total energy + Delta-G solvation = -3697.027361 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.87861 -41.01254 -39.39630 -37.25076 -36.99327 -35.91854 -34.51447 -33.35513
-32.00776 -31.00015 -29.04504 -26.40549 -24.51072 -24.00204 -23.81343 -23.32030
-22.08190 -21.38286 -21.03137 -20.01306 -19.02682 -18.50438 -18.23094 -17.36605
-16.50804 -16.44593 -16.15065 -16.00356 -15.70807 -15.39985 -14.99640 -14.87753
-14.55583 -14.51480 -14.38207 -14.20275 -13.73858 -13.65614 -13.60081 -13.48550
-12.67740 -12.49937 -12.45930 -12.34172 -12.30614 -11.73567 -11.62972 -11.54789
-11.52768 -11.44865 -11.16369 -11.06793 -10.81496 -10.47355 -10.07960 -9.84918
-9.23259 -8.79808 -6.42367 -0.28895 0.31870 1.26031 1.47502 1.48392
1.70919 1.84201 1.97988 2.42161 2.44239 2.80879 2.91352 2.98096
3.52159 3.77291 3.80860 3.86134 3.89616 3.94623 4.17733 4.25125
4.31321 4.36630 4.39536 4.46082 4.54454 4.74931 4.84936 4.88565
4.94888 5.00936 5.05845 5.08026 5.13398 5.20548 5.21584 5.27529
5.30182 5.38517 5.54637 5.65520 5.69791 5.84367 6.02800 6.30938
6.53995 6.83113 7.00873 7.26738 7.41337 8.58223
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.029953 B = 0.002467 C = 0.002400
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 934.588937 B =11347.206088 C =11665.252043
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.126 4.126
3 C 0.251 3.749
4 H 0.022 0.978
5 C -0.617 4.617
6 H 0.043 0.957
7 C 0.002 3.998
8 N -0.922 5.922
9 Si 1.066 2.934
10 H -0.277 1.277
11 H -0.254 1.254
12 H -0.278 1.278
13 N -0.696 5.696
14 C 0.544 3.456
15 O -0.582 6.582
16 C -0.163 4.163
17 C -0.063 4.063
18 C -0.140 4.140
19 C 0.170 3.830
20 N -0.653 5.653
21 C 0.535 3.465
22 O -0.561 6.561
23 C -0.194 4.194
24 C -0.141 4.141
25 C -0.155 4.155
26 C -0.143 4.143
27 C -0.052 4.052
28 H 0.037 0.963
29 H 0.046 0.954
30 H 0.057 0.943
31 H 0.056 0.944
32 H 0.052 0.948
33 H 0.261 0.739
34 H 0.402 0.598
35 H 0.146 0.854
36 H 0.172 0.828
37 H 0.434 0.566
38 H 0.163 0.837
39 H 0.085 0.915
40 H 0.136 0.864
41 H 0.129 0.871
42 H 0.083 0.917
43 H 0.133 0.867
44 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.342 10.131 -25.130 30.657
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.165 4.165
3 C 0.146 3.854
4 H 0.040 0.960
5 C -0.654 4.654
6 H 0.062 0.938
7 C -0.200 4.200
8 N -0.557 5.557
9 Si 0.889 3.111
10 H -0.203 1.203
11 H -0.178 1.178
12 H -0.203 1.203
13 N -0.345 5.345
14 C 0.333 3.667
15 O -0.465 6.465
16 C -0.167 4.167
17 C -0.082 4.082
18 C -0.160 4.160
19 C 0.074 3.926
20 N -0.298 5.298
21 C 0.325 3.675
22 O -0.439 6.439
23 C -0.215 4.215
24 C -0.178 4.178
25 C -0.193 4.193
26 C -0.163 4.163
27 C -0.071 4.071
28 H 0.056 0.944
29 H 0.065 0.935
30 H 0.076 0.924
31 H 0.075 0.925
32 H 0.071 0.929
33 H 0.070 0.930
34 H 0.238 0.762
35 H 0.164 0.836
36 H 0.190 0.810
37 H 0.274 0.726
38 H 0.180 0.820
39 H 0.104 0.896
40 H 0.154 0.846
41 H 0.148 0.852
42 H 0.101 0.899
43 H 0.151 0.849
44 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges -15.031 10.107 -22.185 28.640
hybrid contribution 0.809 0.125 -1.752 1.933
sum -14.222 10.232 -23.936 29.663
Atomic orbital electron populations
1.21768 0.95757 1.00330 1.01248 1.22107 0.95126 0.98223 1.01026
1.18860 0.93674 0.89702 0.83134 0.95981 1.22200 0.91238 1.47985
1.04018 0.93828 1.26683 0.97029 0.91681 1.04588 1.70923 1.11412
1.42725 1.30602 0.83750 0.76154 0.77831 0.73384 1.20345 1.17838
1.20335 1.46017 1.15151 1.55915 1.17393 1.18647 0.81897 0.78293
0.87896 1.90704 1.51868 1.61526 1.42365 1.19987 0.97153 1.05049
0.94525 1.21361 0.98847 0.96371 0.91612 1.21088 0.94484 1.01226
0.99187 1.17991 0.93116 0.94191 0.87338 1.43326 1.47491 1.30504
1.08514 1.20632 0.76983 0.78662 0.91233 1.90742 1.57030 1.61621
1.34490 1.22274 1.08903 0.94123 0.96216 1.23093 0.97023 0.93574
1.04117 1.23070 0.94408 0.98024 1.03778 1.21062 1.00519 1.01526
0.93191 1.21080 0.94990 0.93681 0.97391 0.94365 0.93494 0.92367
0.92499 0.92926 0.92950 0.76212 0.83623 0.81030 0.72588 0.81967
0.89628 0.84564 0.85243 0.89875 0.84948 0.85768
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.42 8.52 71.98 0.61 -4.81 16
2 C -0.13 -5.61 5.03 30.59 0.15 -5.45 16
3 C 0.25 12.15 1.78 44.25 0.08 12.23 16
4 H 0.02 1.19 6.00 -2.39 -0.01 1.17 16
5 C -0.62 -33.63 8.97 25.60 0.23 -33.40 16
6 H 0.04 2.49 7.96 -2.91 -0.02 2.46 16
7 C 0.00 0.12 5.25 84.66 0.44 0.56 16
8 N -0.92 -55.47 13.70 21.45 0.29 -55.18 16
9 Si 1.07 51.08 26.32 68.60 1.81 52.89 16
10 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16
11 H -0.25 -11.55 5.87 99.48 0.58 -10.96 16
12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16
13 N -0.70 -28.65 4.98 -449.21 -2.24 -30.88 16
14 C 0.54 21.95 6.36 86.72 0.55 22.50 16
15 O -0.58 -27.24 13.47 -3.98 -0.05 -27.29 16
16 C -0.16 -5.26 5.88 -20.07 -0.12 -5.38 16
17 C -0.06 -1.53 9.53 22.50 0.21 -1.31 16
18 C -0.14 -2.58 9.94 22.35 0.22 -2.36 16
19 C 0.17 3.52 6.31 38.36 0.24 3.77 16
20 N -0.65 -9.00 5.32 -303.49 -1.62 -10.62 16
21 C 0.53 9.31 7.36 87.65 0.64 9.96 16
22 O -0.56 -15.33 13.81 -3.04 -0.04 -15.37 16
23 C -0.19 -1.72 6.19 -11.55 -0.07 -1.80 16
24 C -0.14 -1.04 10.24 30.62 0.31 -0.72 16
25 C -0.16 -1.52 10.05 30.62 0.31 -1.21 16
26 C -0.14 -3.83 8.63 22.35 0.19 -3.64 16
27 C -0.05 -1.61 9.58 22.50 0.22 -1.40 16
28 H 0.04 1.64 7.88 -2.39 -0.02 1.62 16
29 H 0.05 1.91 5.63 -2.38 -0.01 1.90 16
30 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16
31 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16
32 H 0.05 2.41 5.61 -2.38 -0.01 2.39 16
33 H 0.26 15.64 8.73 -92.71 -0.81 14.83 16
34 H 0.40 14.45 6.55 -92.71 -0.61 13.85 16
35 H 0.15 3.12 6.39 -2.91 -0.02 3.11 16
36 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16
37 H 0.43 2.20 8.81 -92.71 -0.82 1.38 16
38 H 0.16 0.33 8.14 -2.39 -0.02 0.31 16
39 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16
40 H 0.14 0.23 8.14 -2.39 -0.02 0.21 16
41 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16
42 H 0.08 1.28 7.67 -2.39 -0.02 1.27 16
43 H 0.13 3.71 6.28 -2.91 -0.02 3.69 16
44 H 0.12 4.11 7.64 -2.91 -0.02 4.08 16
Total: -1.00 -76.34 359.35 1.85 -74.48
By element:
Atomic # 1 Polarization: 24.96 SS G_CDS: -0.54 Total: 24.43 kcal
Atomic # 6 Polarization: -16.70 SS G_CDS: 4.24 Total: -12.46 kcal
Atomic # 7 Polarization: -93.12 SS G_CDS: -3.56 Total: -96.68 kcal
Atomic # 8 Polarization: -42.56 SS G_CDS: -0.10 Total: -42.66 kcal
Atomic # 14 Polarization: 51.08 SS G_CDS: 1.81 Total: 52.89 kcal
Total: -76.34 1.85 -74.48 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000183811295.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.518 kcal
(2) G-P(sol) polarization free energy of solvation -76.337 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.819 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.483 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.965 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds