Wall clock time and date at job start Tue Mar 31 2020 11:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47139 * 2 1 4 4 H 1.09000 * 109.47432 * 54.99245 * 3 2 1 5 5 C 1.50704 * 109.47404 * 174.99971 * 3 2 1 6 6 H 1.07996 * 120.00019 * 119.99249 * 5 3 2 7 7 C 1.37875 * 119.99639 * 299.99849 * 5 3 2 8 8 N 1.31520 * 120.00107 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99893 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46708 * 90.00258 * 9 7 5 11 11 H 1.48495 * 109.47222 * 209.99834 * 9 7 5 12 12 H 1.48495 * 109.47129 * 330.00344 * 9 7 5 13 13 N 1.46503 * 109.46836 * 295.00001 * 3 2 1 14 14 C 1.34773 * 120.00238 * 85.00287 * 13 3 2 15 15 O 1.21552 * 120.00146 * 359.97438 * 14 13 3 16 16 C 1.47865 * 120.00003 * 180.02562 * 14 13 3 17 17 C 1.39617 * 120.11140 * 359.97438 * 16 14 13 18 18 C 1.37977 * 119.99649 * 180.02562 * 17 16 14 19 19 C 1.38247 * 120.22145 * 0.02562 * 18 17 16 20 20 C 1.38951 * 120.22856 * 359.97438 * 19 18 17 21 21 N 1.39946 * 120.00100 * 179.97438 * 20 19 18 22 22 C 1.34780 * 119.99845 * 213.35670 * 21 20 19 23 23 O 1.21285 * 120.00239 * 5.28136 * 22 21 20 24 24 C 1.50708 * 119.99940 * 185.27722 * 22 21 20 25 25 C 1.52998 * 117.50123 * 248.62636 * 24 22 21 26 26 C 1.52994 * 117.49647 * 180.02562 * 24 22 21 27 27 C 1.38641 * 119.99744 * 0.02562 * 20 19 18 28 28 H 1.08998 * 109.47182 * 300.00285 * 1 2 3 29 29 H 1.09002 * 109.46834 * 59.99906 * 1 2 3 30 30 H 1.08999 * 109.47036 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47182 * 239.99715 * 2 1 3 32 32 H 1.09001 * 109.47079 * 119.99606 * 2 1 3 33 33 H 0.96994 * 119.99957 * 180.02562 * 8 7 5 34 34 H 0.97002 * 119.99436 * 264.99428 * 13 3 2 35 35 H 1.08008 * 119.99865 * 359.97438 * 17 16 14 36 36 H 1.07999 * 119.88377 * 180.02562 * 18 17 16 37 37 H 1.08010 * 119.88883 * 179.70747 * 19 18 17 38 38 H 0.96998 * 120.00383 * 33.36837 * 21 20 19 39 39 H 1.09001 * 115.54406 * 34.33647 * 24 22 21 40 40 H 1.09004 * 117.49793 * 359.97438 * 25 24 22 41 41 H 1.08992 * 117.50008 * 145.01743 * 25 24 22 42 42 H 1.09006 * 117.49825 * 214.97659 * 26 24 22 43 43 H 1.08997 * 117.49949 * 359.97438 * 26 24 22 44 44 H 1.07988 * 120.11141 * 179.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5420 1.4444 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 3.4061 0.3367 2.1729 9 14 6.0050 0.8802 1.3812 10 1 6.4426 2.1131 2.0838 11 1 6.4390 -0.3108 2.1547 12 1 6.6131 0.8397 0.0271 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3413 2.6319 -0.4324 16 6 0.0438 3.3249 -2.6307 17 6 0.9336 3.3631 -3.7059 18 6 0.5662 3.9805 -4.8839 19 6 -0.6817 4.5632 -5.0042 20 6 -1.5746 4.5306 -3.9401 21 7 -2.8364 5.1225 -4.0670 22 6 -3.4214 5.6979 -2.9977 23 8 -2.8160 5.7882 -1.9506 24 6 -4.8277 6.2294 -3.1033 25 6 -5.0165 7.7462 -3.0378 26 6 -5.4356 6.8718 -1.8550 27 6 -1.2150 3.9127 -2.7522 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8292 -0.0610 2.9499 34 1 2.2720 2.1231 -1.9978 35 1 1.9099 2.9100 -3.6153 36 1 1.2558 4.0086 -5.7146 37 1 -0.9620 5.0492 -5.9272 38 1 -3.2900 5.1184 -4.9243 39 1 -5.4951 5.6664 -3.7558 40 1 -4.1236 8.3599 -2.9179 41 1 -5.8082 8.1816 -3.6474 42 1 -6.5034 6.7317 -1.6861 43 1 -4.8187 6.9097 -0.9572 44 1 -1.9073 3.8867 -1.9239 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183869256.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:37 Heat of formation + Delta-G solvation = -21.690968 kcal Electronic energy + Delta-G solvation = -25839.654710 eV Core-core repulsion = 22143.679967 eV Total energy + Delta-G solvation = -3695.974743 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.81120 -39.45220 -38.09348 -36.43494 -35.03758 -34.83314 -32.40224 -31.33672 -30.55373 -29.66279 -26.95578 -25.16173 -23.97937 -22.79728 -22.71833 -22.21780 -20.40753 -20.20710 -19.31662 -18.24674 -17.73755 -16.48406 -16.23786 -15.66859 -15.57428 -15.28812 -15.07462 -14.64495 -14.44529 -14.33301 -13.91249 -13.52511 -13.15903 -12.90142 -12.76332 -12.64684 -11.94495 -11.92077 -11.85149 -11.50762 -11.42804 -11.21474 -10.98943 -10.94039 -10.91114 -10.81227 -10.48443 -10.28575 -10.13200 -9.98253 -9.58581 -9.04825 -8.99168 -8.84273 -8.46118 -8.22081 -7.76533 -6.08906 -4.18262 0.98894 1.33779 2.25719 2.73793 3.27029 3.32591 3.33786 3.35440 3.52697 4.06472 4.22900 4.32124 4.40255 4.43658 4.51314 4.74009 4.86850 4.93990 5.22048 5.22338 5.23411 5.33746 5.36974 5.51552 5.58025 5.60986 5.81412 5.92732 6.20291 6.28368 6.40872 6.44234 6.51505 6.53826 6.71649 6.95482 7.09670 7.15771 7.25666 7.41704 7.49643 7.66093 7.78098 7.92686 7.94746 8.21824 8.70582 8.81559 9.17304 9.48935 10.96539 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019519 B = 0.002885 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.149353 B = 9702.549072 C =10294.909535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.701 5.701 14 C 0.540 3.460 15 O -0.539 6.539 16 C -0.101 4.101 17 C -0.104 4.104 18 C -0.108 4.108 19 C -0.132 4.132 20 C 0.132 3.868 21 N -0.670 5.670 22 C 0.537 3.463 23 O -0.507 6.507 24 C -0.196 4.196 25 C -0.153 4.153 26 C -0.145 4.145 27 C -0.067 4.067 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.022 0.978 31 H 0.031 0.969 32 H 0.100 0.900 33 H 0.264 0.736 34 H 0.387 0.613 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.410 0.590 39 H 0.127 0.873 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.134 10.406 -17.654 24.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.349 5.349 14 C 0.326 3.674 15 O -0.418 6.418 16 C -0.104 4.104 17 C -0.123 4.123 18 C -0.127 4.127 19 C -0.153 4.153 20 C 0.038 3.962 21 N -0.316 5.316 22 C 0.324 3.676 23 O -0.380 6.380 24 C -0.217 4.217 25 C -0.190 4.190 26 C -0.183 4.183 27 C -0.088 4.088 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.221 0.779 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.246 0.754 39 H 0.145 0.855 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.129 0.871 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.266 10.335 -15.968 23.776 hybrid contribution 1.078 -0.099 -0.859 1.382 sum -13.187 10.237 -16.827 23.704 Atomic orbital electron populations 1.21847 0.98359 0.98021 1.01309 1.21930 0.92617 0.99719 1.02282 1.18825 0.94245 0.89218 0.80911 0.93165 1.21225 0.90661 1.38980 1.06326 0.92086 1.24886 0.98591 0.94813 0.95393 1.69899 1.35107 1.37614 1.09314 0.86455 0.84885 0.77626 0.78165 1.20576 1.21087 1.19864 1.46442 1.14314 1.55552 1.18588 1.18118 0.83096 0.79441 0.86792 1.90753 1.51496 1.59725 1.39846 1.20245 0.94785 1.00216 0.95202 1.21411 0.99459 0.98849 0.92584 1.20845 0.95772 0.98291 0.97774 1.20943 0.93607 1.02244 0.98482 1.17595 0.85885 0.97053 0.95627 1.43388 1.17730 1.56968 1.13478 1.19888 0.87255 0.77093 0.83361 1.90818 1.64194 1.54612 1.28373 1.22161 0.94959 0.98193 1.06370 1.22966 1.03899 0.90037 1.02120 1.22998 1.01591 1.00843 0.92831 1.21248 0.96587 0.93692 0.97303 0.93100 0.94304 0.95845 0.95018 0.88233 0.92571 0.77933 0.85161 0.85183 0.85666 0.75404 0.85532 0.88120 0.87639 0.87663 0.87065 0.83570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.51 37.16 0.32 -2.90 16 2 C -0.13 -3.16 5.45 -26.73 -0.15 -3.31 16 3 C 0.27 6.98 2.24 -69.08 -0.15 6.83 16 4 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 5 C -0.53 -14.31 8.73 -34.44 -0.30 -14.61 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -25.07 11.29 55.43 0.63 -24.45 16 9 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 N -0.70 -15.27 4.97 -55.87 -0.28 -15.54 16 14 C 0.54 11.77 6.34 -12.32 -0.08 11.69 16 15 O -0.54 -13.68 13.48 5.32 0.07 -13.61 16 16 C -0.10 -1.78 5.87 -104.99 -0.62 -2.39 16 17 C -0.10 -1.44 9.54 -39.16 -0.37 -1.82 16 18 C -0.11 -1.20 10.02 -39.67 -0.40 -1.59 16 19 C -0.13 -1.40 9.95 -39.31 -0.39 -1.79 16 20 C 0.13 1.72 6.27 -83.74 -0.53 1.20 16 21 N -0.67 -6.79 5.34 -9.89 -0.05 -6.84 16 22 C 0.54 6.47 7.35 -10.98 -0.08 6.38 16 23 O -0.51 -8.66 13.94 5.55 0.08 -8.59 16 24 C -0.20 -1.55 6.19 -91.77 -0.57 -2.12 16 25 C -0.15 -1.01 10.23 -26.76 -0.27 -1.29 16 26 C -0.15 -1.17 10.04 -26.76 -0.27 -1.44 16 27 C -0.07 -1.15 8.20 -38.98 -0.32 -1.47 16 28 H 0.05 1.26 7.84 -51.93 -0.41 0.86 16 29 H 0.04 0.89 5.64 -51.93 -0.29 0.60 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 2.73 5.95 -51.93 -0.31 2.42 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.39 7.28 6.57 -40.82 -0.27 7.01 16 35 H 0.13 1.62 6.40 -52.48 -0.34 1.29 16 36 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.41 2.43 8.82 -40.82 -0.36 2.07 16 39 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.11 1.15 7.67 -51.93 -0.40 0.75 16 44 H 0.15 2.90 6.00 -52.49 -0.32 2.58 16 LS Contribution 363.61 15.07 5.48 5.48 Total: -1.00 -34.36 363.61 -9.37 -43.73 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -6.00 Total: 10.90 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -4.27 Total: -6.92 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 0.30 Total: -46.83 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: 0.15 Total: -22.19 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.36 -9.37 -43.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183869256.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.041 kcal (2) G-P(sol) polarization free energy of solvation -34.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds