Wall clock time and date at job start Tue Mar 31 2020 11:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47139 * 2 1 4 4 H 1.09000 * 109.47432 * 54.99245 * 3 2 1 5 5 C 1.50704 * 109.47404 * 174.99971 * 3 2 1 6 6 H 1.07996 * 120.00019 * 119.99249 * 5 3 2 7 7 C 1.37875 * 119.99639 * 299.99849 * 5 3 2 8 8 N 1.31520 * 120.00107 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99893 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46708 * 90.00258 * 9 7 5 11 11 H 1.48495 * 109.47222 * 209.99834 * 9 7 5 12 12 H 1.48495 * 109.47129 * 330.00344 * 9 7 5 13 13 N 1.46503 * 109.46836 * 295.00001 * 3 2 1 14 14 C 1.34773 * 120.00238 * 85.00287 * 13 3 2 15 15 O 1.21552 * 120.00146 * 359.97438 * 14 13 3 16 16 C 1.47865 * 120.00003 * 180.02562 * 14 13 3 17 17 C 1.39617 * 120.11140 * 359.97438 * 16 14 13 18 18 C 1.37977 * 119.99649 * 180.02562 * 17 16 14 19 19 C 1.38247 * 120.22145 * 0.02562 * 18 17 16 20 20 C 1.38951 * 120.22856 * 359.97438 * 19 18 17 21 21 N 1.39946 * 120.00100 * 179.97438 * 20 19 18 22 22 C 1.34780 * 119.99845 * 213.35670 * 21 20 19 23 23 O 1.21285 * 120.00239 * 5.28136 * 22 21 20 24 24 C 1.50708 * 119.99940 * 185.27722 * 22 21 20 25 25 C 1.52998 * 117.50123 * 248.62636 * 24 22 21 26 26 C 1.52994 * 117.49647 * 180.02562 * 24 22 21 27 27 C 1.38641 * 119.99744 * 0.02562 * 20 19 18 28 28 H 1.08998 * 109.47182 * 300.00285 * 1 2 3 29 29 H 1.09002 * 109.46834 * 59.99906 * 1 2 3 30 30 H 1.08999 * 109.47036 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47182 * 239.99715 * 2 1 3 32 32 H 1.09001 * 109.47079 * 119.99606 * 2 1 3 33 33 H 0.96994 * 119.99957 * 180.02562 * 8 7 5 34 34 H 0.97002 * 119.99436 * 264.99428 * 13 3 2 35 35 H 1.08008 * 119.99865 * 359.97438 * 17 16 14 36 36 H 1.07999 * 119.88377 * 180.02562 * 18 17 16 37 37 H 1.08010 * 119.88883 * 179.70747 * 19 18 17 38 38 H 0.96998 * 120.00383 * 33.36837 * 21 20 19 39 39 H 1.09001 * 115.54406 * 34.33647 * 24 22 21 40 40 H 1.09004 * 117.49793 * 359.97438 * 25 24 22 41 41 H 1.08992 * 117.50008 * 145.01743 * 25 24 22 42 42 H 1.09006 * 117.49825 * 214.97659 * 26 24 22 43 43 H 1.08997 * 117.49949 * 359.97438 * 26 24 22 44 44 H 1.07988 * 120.11141 * 179.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5420 1.4444 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 3.4061 0.3367 2.1729 9 14 6.0050 0.8802 1.3812 10 1 6.4426 2.1131 2.0838 11 1 6.4390 -0.3108 2.1547 12 1 6.6131 0.8397 0.0271 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3413 2.6319 -0.4324 16 6 0.0438 3.3249 -2.6307 17 6 0.9336 3.3631 -3.7059 18 6 0.5662 3.9805 -4.8839 19 6 -0.6817 4.5632 -5.0042 20 6 -1.5746 4.5306 -3.9401 21 7 -2.8364 5.1225 -4.0670 22 6 -3.4214 5.6979 -2.9977 23 8 -2.8160 5.7882 -1.9506 24 6 -4.8277 6.2294 -3.1033 25 6 -5.0165 7.7462 -3.0378 26 6 -5.4356 6.8718 -1.8550 27 6 -1.2150 3.9127 -2.7522 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8292 -0.0610 2.9499 34 1 2.2720 2.1231 -1.9978 35 1 1.9099 2.9100 -3.6153 36 1 1.2558 4.0086 -5.7146 37 1 -0.9620 5.0492 -5.9272 38 1 -3.2900 5.1184 -4.9243 39 1 -5.4951 5.6664 -3.7558 40 1 -4.1236 8.3599 -2.9179 41 1 -5.8082 8.1816 -3.6474 42 1 -6.5034 6.7317 -1.6861 43 1 -4.8187 6.9097 -0.9572 44 1 -1.9073 3.8867 -1.9239 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183869256.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:36 Heat of formation + Delta-G solvation = -45.547296 kcal Electronic energy + Delta-G solvation = -25840.689198 eV Core-core repulsion = 22143.679967 eV Total energy + Delta-G solvation = -3697.009232 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.82975 -40.90652 -39.35395 -37.19541 -36.96609 -35.92349 -34.35648 -33.06707 -31.89918 -30.81625 -28.94518 -26.03248 -25.56998 -24.49934 -23.38672 -23.16807 -22.07463 -21.18065 -21.10427 -19.67793 -18.59217 -18.16889 -17.42160 -17.18952 -16.89779 -16.46707 -16.29535 -16.25289 -15.89311 -15.47508 -15.11767 -14.87754 -14.61492 -14.47975 -14.15695 -13.67988 -13.63719 -13.43347 -13.21056 -12.91035 -12.84299 -12.70024 -12.63393 -12.46739 -12.19199 -12.09129 -11.65338 -11.60826 -11.56593 -11.45301 -11.09391 -10.97872 -10.81320 -10.55071 -10.01188 -9.66489 -9.22593 -8.17482 -6.35713 -0.14918 0.25906 1.35720 1.43952 1.45105 1.55837 1.90278 2.00548 2.33661 2.57480 2.82222 2.94248 3.11941 3.57037 3.78965 3.83201 3.92943 3.93541 4.13912 4.18775 4.22063 4.43649 4.44693 4.51584 4.51761 4.70860 4.72413 4.85078 4.89783 5.01125 5.02027 5.17313 5.19826 5.22161 5.29014 5.38322 5.39901 5.41413 5.51810 5.58255 5.75104 5.88727 5.95076 6.12900 6.36312 6.71264 6.92264 7.09157 7.30369 7.50799 8.88454 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019519 B = 0.002885 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.149353 B = 9702.549072 C =10294.909535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.118 4.118 3 C 0.277 3.723 4 H -0.007 1.007 5 C -0.549 4.549 6 H 0.074 0.926 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.974 3.026 10 H -0.280 1.280 11 H -0.283 1.283 12 H -0.257 1.257 13 N -0.695 5.695 14 C 0.535 3.465 15 O -0.590 6.590 16 C -0.132 4.132 17 C -0.103 4.103 18 C -0.094 4.094 19 C -0.105 4.105 20 C 0.127 3.873 21 N -0.653 5.653 22 C 0.527 3.473 23 O -0.570 6.570 24 C -0.194 4.194 25 C -0.131 4.131 26 C -0.164 4.164 27 C -0.094 4.094 28 H 0.022 0.978 29 H 0.038 0.962 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.265 0.735 34 H 0.404 0.596 35 H 0.143 0.857 36 H 0.178 0.822 37 H 0.177 0.823 38 H 0.434 0.566 39 H 0.165 0.835 40 H 0.085 0.915 41 H 0.142 0.858 42 H 0.130 0.870 43 H 0.074 0.926 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.760 11.387 -22.674 28.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.157 4.157 3 C 0.173 3.827 4 H 0.011 0.989 5 C -0.587 4.587 6 H 0.092 0.908 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.798 3.202 10 H -0.206 1.206 11 H -0.208 1.208 12 H -0.181 1.181 13 N -0.344 5.344 14 C 0.323 3.677 15 O -0.473 6.473 16 C -0.135 4.135 17 C -0.123 4.123 18 C -0.112 4.112 19 C -0.126 4.126 20 C 0.033 3.967 21 N -0.300 5.300 22 C 0.317 3.683 23 O -0.448 6.448 24 C -0.215 4.215 25 C -0.168 4.168 26 C -0.201 4.201 27 C -0.115 4.115 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.240 0.760 35 H 0.161 0.839 36 H 0.195 0.805 37 H 0.194 0.806 38 H 0.275 0.725 39 H 0.182 0.818 40 H 0.104 0.896 41 H 0.160 0.840 42 H 0.148 0.852 43 H 0.093 0.907 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.904 11.323 -21.085 27.678 hybrid contribution 0.891 -0.331 0.654 1.153 sum -13.013 10.992 -20.431 26.600 Atomic orbital electron populations 1.21679 0.97368 0.99157 0.99906 1.21771 0.93393 0.98978 1.01587 1.18437 0.94014 0.89230 0.80974 0.98903 1.21557 0.91017 1.39116 1.06973 0.90779 1.25830 1.03664 0.94236 0.94888 1.70062 1.37247 1.38291 1.09866 0.85315 0.78659 0.77396 0.78783 1.20580 1.20804 1.18068 1.46162 1.14954 1.55513 1.17781 1.18863 0.82219 0.78593 0.87976 1.90716 1.52833 1.61549 1.42154 1.19890 0.96408 1.02788 0.94454 1.21616 0.99133 0.99019 0.92488 1.21381 0.96517 0.95823 0.97438 1.21509 0.92312 0.99873 0.98863 1.17730 0.87598 0.96486 0.94890 1.43288 1.16872 1.55570 1.14237 1.20744 0.88604 0.76293 0.82670 1.90810 1.65993 1.57139 1.30829 1.22277 0.92672 0.99573 1.06942 1.23072 1.04064 0.88795 1.00904 1.23040 1.02380 1.02628 0.92077 1.21028 0.96148 0.96174 0.98195 0.95922 0.94343 0.93177 0.93612 0.90685 0.92535 0.76000 0.83899 0.80494 0.80577 0.72544 0.81785 0.89597 0.83984 0.85155 0.90700 0.87917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.08 8.51 71.98 0.61 -5.47 16 2 C -0.12 -6.17 5.45 30.59 0.17 -6.00 16 3 C 0.28 15.14 2.24 44.25 0.10 15.24 16 4 H -0.01 -0.45 7.58 -2.39 -0.02 -0.47 16 5 C -0.55 -30.06 8.73 25.60 0.22 -29.84 16 6 H 0.07 3.77 7.74 -2.91 -0.02 3.74 16 7 C 0.01 0.76 5.29 84.65 0.45 1.21 16 8 N -0.92 -54.09 11.29 21.45 0.24 -53.85 16 9 Si 0.97 42.95 29.54 68.60 2.03 44.98 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 12 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 13 N -0.70 -31.64 4.97 -448.95 -2.23 -33.87 16 14 C 0.54 24.99 6.34 86.79 0.55 25.54 16 15 O -0.59 -33.01 13.48 -3.88 -0.05 -33.06 16 16 C -0.13 -4.82 5.87 -20.10 -0.12 -4.93 16 17 C -0.10 -2.68 9.54 22.54 0.21 -2.46 16 18 C -0.09 -1.61 10.02 22.21 0.22 -1.39 16 19 C -0.11 -1.73 9.95 22.44 0.22 -1.50 16 20 C 0.13 3.14 6.27 38.11 0.24 3.38 16 21 N -0.65 -12.08 5.34 -303.59 -1.62 -13.70 16 22 C 0.53 12.85 7.35 87.66 0.64 13.50 16 23 O -0.57 -21.26 13.94 -3.05 -0.04 -21.30 16 24 C -0.19 -2.79 6.19 -11.54 -0.07 -2.86 16 25 C -0.13 -1.48 10.23 30.58 0.31 -1.17 16 26 C -0.16 -2.62 10.04 30.58 0.31 -2.31 16 27 C -0.09 -3.39 8.20 22.66 0.19 -3.20 16 28 H 0.02 1.19 7.84 -2.39 -0.02 1.17 16 29 H 0.04 1.86 5.64 -2.39 -0.01 1.85 16 30 H 0.05 2.13 8.14 -2.39 -0.02 2.12 16 31 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.07 4.31 5.95 -2.39 -0.01 4.29 16 33 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 34 H 0.40 15.30 6.57 -92.71 -0.61 14.69 16 35 H 0.14 3.24 6.40 -2.91 -0.02 3.22 16 36 H 0.18 1.53 8.06 -2.91 -0.02 1.50 16 37 H 0.18 1.20 8.06 -2.91 -0.02 1.17 16 38 H 0.43 3.53 8.82 -92.71 -0.82 2.71 16 39 H 0.16 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.09 1.24 8.14 -2.38 -0.02 1.23 16 41 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.13 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.07 1.75 7.67 -2.39 -0.02 1.74 16 44 H 0.10 4.58 6.00 -2.92 -0.02 4.56 16 Total: -1.00 -85.50 363.61 2.20 -83.30 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: -0.38 Total: 29.77 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 4.26 Total: -2.27 kcal Atomic # 7 Polarization: -97.81 SS G_CDS: -3.61 Total: -101.42 kcal Atomic # 8 Polarization: -54.27 SS G_CDS: -0.09 Total: -54.36 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -85.50 2.20 -83.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183869256.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.754 kcal (2) G-P(sol) polarization free energy of solvation -85.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds