Wall clock time and date at job start Tue Mar 31 2020 11:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46960 * 2 1 4 4 H 1.08998 * 109.47243 * 305.56753 * 3 2 1 5 5 C 1.50703 * 109.47267 * 185.56562 * 3 2 1 6 6 H 1.07999 * 119.99858 * 245.42816 * 5 3 2 7 7 C 1.37877 * 119.99710 * 65.42364 * 5 3 2 8 8 N 1.31512 * 120.00306 * 9.30822 * 7 5 3 9 9 Si 1.86802 * 119.99844 * 189.30786 * 7 5 3 10 10 H 1.48506 * 109.47286 * 84.99159 * 9 7 5 11 11 H 1.48498 * 109.47271 * 204.99137 * 9 7 5 12 12 H 1.48506 * 109.47055 * 324.99637 * 9 7 5 13 13 N 1.46504 * 109.47141 * 65.56583 * 3 2 1 14 14 C 1.34778 * 119.99837 * 274.99952 * 13 3 2 15 15 O 1.21552 * 120.00158 * 359.97438 * 14 13 3 16 16 C 1.47860 * 119.99755 * 180.02562 * 14 13 3 17 17 C 1.39617 * 120.11247 * 0.02562 * 16 14 13 18 18 C 1.37977 * 119.99537 * 180.02562 * 17 16 14 19 19 C 1.38251 * 120.22618 * 0.02882 * 18 17 16 20 20 C 1.38955 * 120.22162 * 359.96907 * 19 18 17 21 21 N 1.39950 * 120.00015 * 179.97438 * 20 19 18 22 22 C 1.34776 * 120.00076 * 212.12185 * 21 20 19 23 23 O 1.21286 * 119.99596 * 5.48037 * 22 21 20 24 24 C 1.50700 * 120.00159 * 185.47897 * 22 21 20 25 25 C 1.52999 * 117.49801 * 248.62263 * 24 22 21 26 26 C 1.53000 * 60.00035 * 252.50841 * 25 24 22 27 27 C 1.38638 * 119.99614 * 0.02562 * 20 19 18 28 28 H 1.09005 * 109.47258 * 299.99664 * 1 2 3 29 29 H 1.08996 * 109.47633 * 59.99976 * 1 2 3 30 30 H 1.09004 * 109.47371 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47566 * 240.00044 * 2 1 3 32 32 H 1.09003 * 109.47234 * 119.99485 * 2 1 3 33 33 H 0.96994 * 120.00155 * 180.02562 * 8 7 5 34 34 H 0.97003 * 119.99684 * 95.00139 * 13 3 2 35 35 H 1.08003 * 120.00097 * 0.02562 * 17 16 14 36 36 H 1.08004 * 119.88858 * 179.97438 * 18 17 16 37 37 H 1.07994 * 119.88944 * 179.69723 * 19 18 17 38 38 H 0.97006 * 119.99855 * 32.11938 * 21 20 19 39 39 H 1.09004 * 115.54657 * 34.32965 * 24 22 21 40 40 H 1.08997 * 117.49945 * 359.97438 * 25 24 22 41 41 H 1.09000 * 117.49583 * 145.02068 * 25 24 22 42 42 H 1.09003 * 117.50034 * 252.51352 * 26 25 24 43 43 H 1.08998 * 117.51347 * 107.48105 * 26 25 24 44 44 H 1.08001 * 120.10634 * 179.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5975 1.9843 -0.8359 5 6 3.5406 1.4448 -0.1378 6 1 4.1567 1.8069 0.6720 7 6 4.1270 0.9846 -1.2977 8 7 3.3837 0.7165 -2.3489 9 14 5.9776 0.7420 -1.3760 10 1 6.3244 -0.5978 -0.8374 11 1 6.4305 0.8408 -2.7868 12 1 6.6490 1.7900 -0.5659 13 7 1.6640 2.0934 1.2575 14 6 0.4478 2.6599 1.3858 15 8 -0.3370 2.6312 0.4581 16 6 0.0686 3.3172 2.6548 17 6 0.9688 3.3530 3.7215 18 6 0.6123 3.9666 4.9047 19 6 -0.6353 4.5469 5.0394 20 6 -1.5383 4.5168 3.9838 21 7 -2.8002 5.1052 4.1254 22 6 -3.8624 4.5859 3.4785 23 8 -3.7463 3.5525 2.8543 24 6 -5.1943 5.2890 3.5310 25 6 -6.3236 4.6063 4.3051 26 6 -6.3612 4.6491 2.7762 27 6 -1.1897 3.9028 2.7907 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.7962 0.3924 -3.1647 34 1 2.2905 2.1166 1.9978 35 1 1.9442 2.9003 3.6203 36 1 1.3099 3.9929 5.7289 37 1 -0.9104 5.0215 5.9697 38 1 -2.9103 5.8870 4.6891 39 1 -5.1502 6.3778 3.5601 40 1 -6.1034 3.6483 4.7761 41 1 -7.0228 5.2458 4.8439 42 1 -7.0851 5.3169 2.3091 43 1 -6.1655 3.7197 2.2414 44 1 -1.8904 3.8779 1.9692 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183869276.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:41 Heat of formation + Delta-G solvation = -22.920040 kcal Electronic energy + Delta-G solvation = -25861.236823 eV Core-core repulsion = 22165.208783 eV Total energy + Delta-G solvation = -3696.028040 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.81848 -39.44944 -38.09135 -36.43535 -35.02485 -34.83199 -32.37829 -31.38582 -30.58208 -29.66747 -26.95112 -25.16129 -23.98085 -22.80087 -22.70838 -22.22005 -20.43910 -20.20552 -19.34241 -18.24988 -17.73627 -16.47483 -16.24222 -15.66882 -15.57205 -15.29139 -15.06667 -14.62545 -14.46121 -14.32738 -13.92750 -13.53239 -13.14025 -12.90359 -12.78962 -12.63494 -12.00534 -11.88939 -11.81539 -11.56609 -11.39911 -11.26978 -10.98801 -10.98503 -10.91891 -10.75325 -10.49538 -10.30596 -10.15852 -9.97229 -9.63109 -9.06332 -9.00161 -8.84217 -8.44544 -8.21063 -7.78159 -6.11322 -4.16830 0.99033 1.34073 2.25573 2.73550 3.27134 3.32856 3.34040 3.35213 3.52570 4.06080 4.24304 4.31103 4.40279 4.43851 4.50940 4.73912 4.86903 4.94107 5.21574 5.22057 5.23354 5.33721 5.36880 5.51718 5.57776 5.60914 5.81122 5.92909 6.20063 6.28667 6.40978 6.42409 6.47865 6.54185 6.67990 6.95903 7.07452 7.15846 7.23901 7.38712 7.47237 7.65936 7.76073 7.88869 7.92323 8.11279 8.71156 8.82962 9.17489 9.48944 10.96938 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.021332 B = 0.002913 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.266441 B = 9610.202667 C =10528.181454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.119 4.119 3 C 0.268 3.732 4 H 0.057 0.943 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.879 5.879 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.701 5.701 14 C 0.540 3.460 15 O -0.538 6.538 16 C -0.100 4.100 17 C -0.104 4.104 18 C -0.108 4.108 19 C -0.133 4.133 20 C 0.132 3.868 21 N -0.670 5.670 22 C 0.537 3.463 23 O -0.506 6.506 24 C -0.196 4.196 25 C -0.153 4.153 26 C -0.145 4.145 27 C -0.069 4.069 28 H 0.042 0.958 29 H 0.051 0.949 30 H 0.023 0.977 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.265 0.735 34 H 0.387 0.613 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.410 0.590 39 H 0.127 0.873 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.664 10.770 17.772 24.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.158 4.158 3 C 0.166 3.834 4 H 0.075 0.925 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.349 5.349 14 C 0.325 3.675 15 O -0.417 6.417 16 C -0.104 4.104 17 C -0.124 4.124 18 C -0.127 4.127 19 C -0.154 4.154 20 C 0.039 3.961 21 N -0.315 5.315 22 C 0.324 3.676 23 O -0.380 6.380 24 C -0.217 4.217 25 C -0.190 4.190 26 C -0.183 4.183 27 C -0.090 4.090 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.220 0.780 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.246 0.754 39 H 0.145 0.855 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.129 0.871 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.167 9.927 16.378 23.822 hybrid contribution 1.364 0.336 0.651 1.548 sum -12.804 10.263 17.029 23.649 Atomic orbital electron populations 1.21850 0.97929 0.98214 1.01673 1.21850 0.93059 0.99773 1.01139 1.18832 0.94517 0.89040 0.80960 0.92480 1.21169 0.90562 1.44179 1.01622 0.92092 1.24885 0.98401 0.95170 0.95021 1.69985 1.35616 1.43779 1.02199 0.86534 0.85056 0.78691 0.77241 1.20426 1.21190 1.19921 1.46429 1.14156 1.55732 1.18571 1.18121 0.83067 0.79499 0.86765 1.90756 1.50806 1.59692 1.40485 1.20242 0.94531 1.00310 0.95335 1.21408 0.99396 0.98763 0.92790 1.20843 0.95958 0.98146 0.97711 1.20932 0.94676 1.02721 0.97030 1.17605 0.85210 0.99224 0.94093 1.43392 1.06206 1.32352 1.49551 1.19884 0.84629 0.84577 0.78500 1.90813 1.84204 1.22637 1.40338 1.22164 0.88608 1.00125 1.10790 1.22973 0.98423 1.02272 0.95361 1.23005 0.97352 1.03459 0.94440 1.21272 0.95676 0.95625 0.96384 0.93900 0.92960 0.95766 0.90192 0.94717 0.92553 0.77954 0.85170 0.85191 0.85673 0.75393 0.85525 0.88127 0.87640 0.87657 0.87067 0.83443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.53 37.15 0.32 -2.97 16 2 C -0.12 -2.96 5.50 -26.73 -0.15 -3.11 16 3 C 0.27 6.93 2.10 -69.08 -0.15 6.78 16 4 H 0.06 1.72 7.52 -51.93 -0.39 1.33 16 5 C -0.54 -14.36 8.66 -34.44 -0.30 -14.66 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.88 5.16 -17.82 -0.09 1.79 16 8 N -0.88 -25.23 12.15 55.43 0.67 -24.56 16 9 Si 0.90 20.78 29.55 -169.99 -5.02 15.76 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.70 -15.22 4.98 -55.87 -0.28 -15.50 16 14 C 0.54 11.75 6.37 -12.32 -0.08 11.67 16 15 O -0.54 -13.66 13.48 5.32 0.07 -13.58 16 16 C -0.10 -1.77 5.87 -104.99 -0.62 -2.38 16 17 C -0.10 -1.45 9.54 -39.16 -0.37 -1.82 16 18 C -0.11 -1.19 10.02 -39.67 -0.40 -1.59 16 19 C -0.13 -1.40 9.95 -39.31 -0.39 -1.80 16 20 C 0.13 1.72 6.30 -83.74 -0.53 1.20 16 21 N -0.67 -6.77 5.34 -9.89 -0.05 -6.82 16 22 C 0.54 6.43 7.36 -10.99 -0.08 6.35 16 23 O -0.51 -8.59 13.87 5.55 0.08 -8.51 16 24 C -0.20 -1.55 6.19 -91.77 -0.57 -2.12 16 25 C -0.15 -1.01 10.23 -26.73 -0.27 -1.28 16 26 C -0.15 -1.16 10.04 -26.73 -0.27 -1.43 16 27 C -0.07 -1.17 8.20 -38.98 -0.32 -1.49 16 28 H 0.04 1.01 5.63 -51.93 -0.29 0.72 16 29 H 0.05 1.31 7.88 -51.93 -0.41 0.90 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 2.16 6.78 -51.93 -0.35 1.81 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.39 7.23 6.56 -40.82 -0.27 6.96 16 35 H 0.13 1.62 6.40 -52.48 -0.34 1.28 16 36 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.41 2.43 8.81 -40.82 -0.36 2.07 16 39 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.11 1.14 7.67 -51.93 -0.40 0.74 16 44 H 0.15 2.92 5.92 -52.49 -0.31 2.61 16 LS Contribution 364.89 15.07 5.50 5.50 Total: -1.00 -34.48 364.89 -9.33 -43.82 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -6.04 Total: 10.75 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -4.26 Total: -6.84 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.34 Total: -46.88 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: 0.15 Total: -22.10 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.48 -9.33 -43.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183869276.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.895 kcal (2) G-P(sol) polarization free energy of solvation -34.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds