Wall clock time and date at job start Tue Mar 31 2020 11:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46960 * 2 1 4 4 H 1.08998 * 109.47243 * 305.56753 * 3 2 1 5 5 C 1.50703 * 109.47267 * 185.56562 * 3 2 1 6 6 H 1.07999 * 119.99858 * 245.42816 * 5 3 2 7 7 C 1.37877 * 119.99710 * 65.42364 * 5 3 2 8 8 N 1.31512 * 120.00306 * 9.30822 * 7 5 3 9 9 Si 1.86802 * 119.99844 * 189.30786 * 7 5 3 10 10 H 1.48506 * 109.47286 * 84.99159 * 9 7 5 11 11 H 1.48498 * 109.47271 * 204.99137 * 9 7 5 12 12 H 1.48506 * 109.47055 * 324.99637 * 9 7 5 13 13 N 1.46504 * 109.47141 * 65.56583 * 3 2 1 14 14 C 1.34778 * 119.99837 * 274.99952 * 13 3 2 15 15 O 1.21552 * 120.00158 * 359.97438 * 14 13 3 16 16 C 1.47860 * 119.99755 * 180.02562 * 14 13 3 17 17 C 1.39617 * 120.11247 * 0.02562 * 16 14 13 18 18 C 1.37977 * 119.99537 * 180.02562 * 17 16 14 19 19 C 1.38251 * 120.22618 * 0.02882 * 18 17 16 20 20 C 1.38955 * 120.22162 * 359.96907 * 19 18 17 21 21 N 1.39950 * 120.00015 * 179.97438 * 20 19 18 22 22 C 1.34776 * 120.00076 * 212.12185 * 21 20 19 23 23 O 1.21286 * 119.99596 * 5.48037 * 22 21 20 24 24 C 1.50700 * 120.00159 * 185.47897 * 22 21 20 25 25 C 1.52999 * 117.49801 * 248.62263 * 24 22 21 26 26 C 1.53000 * 60.00035 * 252.50841 * 25 24 22 27 27 C 1.38638 * 119.99614 * 0.02562 * 20 19 18 28 28 H 1.09005 * 109.47258 * 299.99664 * 1 2 3 29 29 H 1.08996 * 109.47633 * 59.99976 * 1 2 3 30 30 H 1.09004 * 109.47371 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47566 * 240.00044 * 2 1 3 32 32 H 1.09003 * 109.47234 * 119.99485 * 2 1 3 33 33 H 0.96994 * 120.00155 * 180.02562 * 8 7 5 34 34 H 0.97003 * 119.99684 * 95.00139 * 13 3 2 35 35 H 1.08003 * 120.00097 * 0.02562 * 17 16 14 36 36 H 1.08004 * 119.88858 * 179.97438 * 18 17 16 37 37 H 1.07994 * 119.88944 * 179.69723 * 19 18 17 38 38 H 0.97006 * 119.99855 * 32.11938 * 21 20 19 39 39 H 1.09004 * 115.54657 * 34.32965 * 24 22 21 40 40 H 1.08997 * 117.49945 * 359.97438 * 25 24 22 41 41 H 1.09000 * 117.49583 * 145.02068 * 25 24 22 42 42 H 1.09003 * 117.50034 * 252.51352 * 26 25 24 43 43 H 1.08998 * 117.51347 * 107.48105 * 26 25 24 44 44 H 1.08001 * 120.10634 * 179.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5975 1.9843 -0.8359 5 6 3.5406 1.4448 -0.1378 6 1 4.1567 1.8069 0.6720 7 6 4.1270 0.9846 -1.2977 8 7 3.3837 0.7165 -2.3489 9 14 5.9776 0.7420 -1.3760 10 1 6.3244 -0.5978 -0.8374 11 1 6.4305 0.8408 -2.7868 12 1 6.6490 1.7900 -0.5659 13 7 1.6640 2.0934 1.2575 14 6 0.4478 2.6599 1.3858 15 8 -0.3370 2.6312 0.4581 16 6 0.0686 3.3172 2.6548 17 6 0.9688 3.3530 3.7215 18 6 0.6123 3.9666 4.9047 19 6 -0.6353 4.5469 5.0394 20 6 -1.5383 4.5168 3.9838 21 7 -2.8002 5.1052 4.1254 22 6 -3.8624 4.5859 3.4785 23 8 -3.7463 3.5525 2.8543 24 6 -5.1943 5.2890 3.5310 25 6 -6.3236 4.6063 4.3051 26 6 -6.3612 4.6491 2.7762 27 6 -1.1897 3.9028 2.7907 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.7962 0.3924 -3.1647 34 1 2.2905 2.1166 1.9978 35 1 1.9442 2.9003 3.6203 36 1 1.3099 3.9929 5.7289 37 1 -0.9104 5.0215 5.9697 38 1 -2.9103 5.8870 4.6891 39 1 -5.1502 6.3778 3.5601 40 1 -6.1034 3.6483 4.7761 41 1 -7.0228 5.2458 4.8439 42 1 -7.0851 5.3169 2.3091 43 1 -6.1655 3.7197 2.2414 44 1 -1.8904 3.8779 1.9692 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183869276.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:40 Heat of formation + Delta-G solvation = -46.937370 kcal Electronic energy + Delta-G solvation = -25862.278292 eV Core-core repulsion = 22165.208783 eV Total energy + Delta-G solvation = -3697.069510 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.83148 -40.90124 -39.34797 -37.18994 -36.94878 -35.91994 -34.34115 -33.14324 -31.90425 -30.81396 -28.94638 -26.02771 -25.56450 -24.50442 -23.38655 -23.16731 -22.11973 -21.18963 -21.09889 -19.67714 -18.58893 -18.15410 -17.43115 -17.18763 -16.88915 -16.40804 -16.32631 -16.24880 -15.91227 -15.46157 -15.12774 -14.89473 -14.62779 -14.46185 -14.14275 -13.69358 -13.62443 -13.44317 -13.32253 -12.92718 -12.83297 -12.64356 -12.62306 -12.46537 -12.23152 -12.11378 -11.71361 -11.61629 -11.56212 -11.45518 -11.13189 -10.96518 -10.78418 -10.55056 -10.01139 -9.67385 -9.21145 -8.20221 -6.34456 -0.14463 0.26470 1.36021 1.44252 1.46169 1.55693 1.90472 2.01372 2.33951 2.57692 2.82446 2.94736 3.11337 3.57097 3.79128 3.83507 3.93512 3.93637 4.14527 4.19043 4.22542 4.39425 4.44801 4.46066 4.51867 4.66041 4.72611 4.85338 4.90159 5.00303 5.01390 5.15271 5.19945 5.20925 5.29524 5.35417 5.39603 5.40788 5.48114 5.58580 5.69334 5.87717 5.95481 6.03207 6.36555 6.73278 6.92595 7.09057 7.30868 7.51209 8.88970 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.021332 B = 0.002913 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.266441 B = 9610.202667 C =10528.181454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.110 4.110 3 C 0.275 3.725 4 H 0.000 1.000 5 C -0.549 4.549 6 H 0.076 0.924 7 C 0.016 3.984 8 N -0.919 5.919 9 Si 0.972 3.028 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.261 1.261 13 N -0.695 5.695 14 C 0.535 3.465 15 O -0.590 6.590 16 C -0.131 4.131 17 C -0.104 4.104 18 C -0.093 4.093 19 C -0.106 4.106 20 C 0.128 3.872 21 N -0.653 5.653 22 C 0.527 3.473 23 O -0.568 6.568 24 C -0.195 4.195 25 C -0.131 4.131 26 C -0.164 4.164 27 C -0.096 4.096 28 H 0.037 0.963 29 H 0.023 0.977 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.265 0.735 34 H 0.404 0.596 35 H 0.144 0.856 36 H 0.178 0.822 37 H 0.177 0.823 38 H 0.434 0.566 39 H 0.164 0.836 40 H 0.086 0.914 41 H 0.142 0.858 42 H 0.130 0.870 43 H 0.075 0.925 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.718 12.599 22.506 28.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.150 4.150 3 C 0.172 3.828 4 H 0.018 0.982 5 C -0.587 4.587 6 H 0.094 0.906 7 C -0.185 4.185 8 N -0.556 5.556 9 Si 0.796 3.204 10 H -0.194 1.194 11 H -0.214 1.214 12 H -0.185 1.185 13 N -0.344 5.344 14 C 0.323 3.677 15 O -0.472 6.472 16 C -0.135 4.135 17 C -0.123 4.123 18 C -0.111 4.111 19 C -0.126 4.126 20 C 0.033 3.967 21 N -0.299 5.299 22 C 0.317 3.683 23 O -0.446 6.446 24 C -0.215 4.215 25 C -0.168 4.168 26 C -0.201 4.201 27 C -0.117 4.117 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.240 0.760 35 H 0.161 0.839 36 H 0.195 0.805 37 H 0.194 0.806 38 H 0.274 0.726 39 H 0.181 0.819 40 H 0.105 0.895 41 H 0.160 0.840 42 H 0.148 0.852 43 H 0.094 0.906 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.211 11.808 21.193 27.624 hybrid contribution 0.986 -0.168 -0.760 1.257 sum -12.224 11.640 20.433 26.503 Atomic orbital electron populations 1.21682 0.97245 0.99259 1.00061 1.21703 0.93531 0.99111 1.00612 1.18439 0.94260 0.89023 0.81063 0.98196 1.21516 0.90911 1.44123 1.02197 0.90610 1.25842 1.03521 0.94649 0.94473 1.70151 1.37900 1.44714 1.02877 0.85362 0.78726 0.79153 0.77125 1.19407 1.21437 1.18531 1.46151 1.14806 1.55679 1.17762 1.18866 0.82176 0.78656 0.87958 1.90719 1.52156 1.61540 1.42807 1.19889 0.96168 1.02897 0.94554 1.21614 0.99066 0.98911 0.92711 1.21381 0.96711 0.95713 0.97332 1.21499 0.93339 1.00350 0.97458 1.17739 0.86798 0.98800 0.93337 1.43296 1.04793 1.32658 1.49201 1.20733 0.86326 0.83970 0.77291 1.90804 1.85302 1.25636 1.42884 1.22278 0.86244 1.01546 1.11458 1.23079 0.97583 1.02010 0.94127 1.23047 0.98458 1.02758 0.95850 1.21050 0.95099 0.98210 0.97363 0.94357 0.95778 0.93146 0.92597 0.92987 0.92577 0.75986 0.83869 0.80494 0.80581 0.72559 0.81858 0.89537 0.84017 0.85199 0.90645 0.87808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.25 8.53 71.98 0.61 -5.64 16 2 C -0.11 -5.74 5.50 30.59 0.17 -5.57 16 3 C 0.28 15.00 2.10 44.25 0.09 15.10 16 4 H 0.00 0.01 7.52 -2.39 -0.02 -0.01 16 5 C -0.55 -29.93 8.66 25.60 0.22 -29.71 16 6 H 0.08 3.81 7.74 -2.91 -0.02 3.79 16 7 C 0.02 0.86 5.16 84.66 0.44 1.29 16 8 N -0.92 -54.88 12.15 21.45 0.26 -54.62 16 9 Si 0.97 42.74 29.55 68.60 2.03 44.77 16 10 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 12 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 13 N -0.69 -31.49 4.98 -448.95 -2.23 -33.73 16 14 C 0.54 24.97 6.37 86.79 0.55 25.52 16 15 O -0.59 -33.04 13.48 -3.88 -0.05 -33.10 16 16 C -0.13 -4.80 5.87 -20.11 -0.12 -4.92 16 17 C -0.10 -2.68 9.54 22.54 0.21 -2.46 16 18 C -0.09 -1.60 10.02 22.21 0.22 -1.38 16 19 C -0.11 -1.74 9.95 22.44 0.22 -1.51 16 20 C 0.13 3.15 6.30 38.11 0.24 3.39 16 21 N -0.65 -12.09 5.34 -303.60 -1.62 -13.71 16 22 C 0.53 12.79 7.36 87.66 0.64 13.44 16 23 O -0.57 -21.01 13.87 -3.05 -0.04 -21.05 16 24 C -0.19 -2.79 6.19 -11.54 -0.07 -2.86 16 25 C -0.13 -1.46 10.23 30.59 0.31 -1.14 16 26 C -0.16 -2.60 10.04 30.59 0.31 -2.29 16 27 C -0.10 -3.46 8.20 22.66 0.19 -3.27 16 28 H 0.04 1.92 5.63 -2.38 -0.01 1.91 16 29 H 0.02 1.29 7.88 -2.39 -0.02 1.27 16 30 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 31 H 0.06 3.16 6.78 -2.39 -0.02 3.15 16 32 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 34 H 0.40 15.17 6.56 -92.71 -0.61 14.56 16 35 H 0.14 3.22 6.40 -2.91 -0.02 3.20 16 36 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 38 H 0.43 3.56 8.81 -92.70 -0.82 2.74 16 39 H 0.16 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.07 1.75 7.67 -2.39 -0.02 1.73 16 44 H 0.10 4.64 5.92 -2.91 -0.02 4.62 16 Total: -1.00 -85.81 364.89 2.20 -83.61 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: -0.38 Total: 29.86 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 4.25 Total: -2.03 kcal Atomic # 7 Polarization: -98.46 SS G_CDS: -3.60 Total: -102.06 kcal Atomic # 8 Polarization: -54.05 SS G_CDS: -0.09 Total: -54.15 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -85.81 2.20 -83.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183869276.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.671 kcal (2) G-P(sol) polarization free energy of solvation -85.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds