Wall clock time and date at job start Tue Mar 31 2020 11:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 N 1.46507 * 109.47144 * 295.00275 * 3 2 1 14 14 C 1.34773 * 120.00337 * 85.00358 * 13 3 2 15 15 O 1.21285 * 119.99653 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00176 * 180.02562 * 14 13 3 17 17 C 1.50696 * 109.46967 * 179.97438 * 16 14 13 18 18 C 1.34217 * 126.50134 * 265.01586 * 17 16 14 19 19 N 1.36935 * 109.88832 * 180.02562 * 18 17 16 20 20 H 0.96995 * 125.06498 * 179.97438 * 19 18 17 21 21 C 1.37692 * 109.86409 * 0.02562 * 19 18 17 22 22 C 1.39220 * 133.37981 * 179.97438 * 21 19 18 23 23 C 1.37714 * 120.02533 * 180.02562 * 22 21 19 24 24 C 1.38793 * 120.72117 * 0.02562 * 23 22 21 25 25 C 1.38117 * 120.31798 * 359.97438 * 24 23 22 26 26 O 1.35880 * 120.22713 * 179.97438 * 25 24 23 27 27 C 1.42899 * 116.99399 * 0.02562 * 26 25 24 28 28 C 1.40061 * 119.55324 * 359.66313 * 25 24 23 29 29 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 31 31 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 32 32 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 33 33 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 34 34 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 35 35 H 0.96999 * 119.99253 * 265.00221 * 13 3 2 36 36 H 1.09003 * 109.46719 * 299.99416 * 16 14 13 37 37 H 1.08991 * 109.47126 * 59.99074 * 16 14 13 38 38 H 1.08002 * 125.05848 * 359.97438 * 18 17 16 39 39 H 1.07999 * 119.98724 * 0.02562 * 22 21 19 40 40 H 1.08005 * 119.63701 * 179.97438 * 23 22 21 41 41 H 1.08008 * 119.84019 * 179.97438 * 24 23 22 42 42 H 1.09002 * 109.47498 * 299.99729 * 27 26 25 43 43 H 1.09000 * 109.47370 * 59.99877 * 27 26 25 44 44 H 1.09006 * 109.46873 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.4486 2.1066 2.0771 11 1 6.4366 -0.3171 2.1526 12 1 6.6108 0.8288 0.0225 13 7 1.6523 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3670 15 8 -0.3396 2.6320 -0.4343 16 6 0.0361 3.3377 -2.6548 17 6 -1.3617 3.8852 -2.5234 18 6 -2.4962 3.2776 -2.9043 19 7 -3.5704 4.0803 -2.6269 20 1 -4.4958 3.8565 -2.8121 21 6 -3.1407 5.2528 -2.0468 22 6 -3.8004 6.3866 -1.5803 23 6 -3.0811 7.4274 -1.0363 24 6 -1.6977 7.3623 -0.9460 25 6 -1.0209 6.2480 -1.4019 26 8 0.3336 6.1864 -1.3130 27 6 0.9975 7.3122 -0.7351 28 6 -1.7406 5.1790 -1.9505 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8899 34 1 3.8292 -0.0558 2.9526 35 1 2.2719 2.1232 -1.9978 36 1 0.7275 4.1530 -2.8679 37 1 0.0672 2.6131 -3.4684 38 1 -2.5534 2.3012 -3.3624 39 1 -4.8766 6.4500 -1.6452 40 1 -3.5992 8.3042 -0.6768 41 1 -1.1477 8.1870 -0.5171 42 1 0.7830 8.2030 -1.3253 43 1 0.6434 7.4584 0.2853 44 1 2.0728 7.1335 -0.7240 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183947559.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:25 Heat of formation + Delta-G solvation = -22.201495 kcal Electronic energy + Delta-G solvation = -26765.511395 eV Core-core repulsion = 23069.514513 eV Total energy + Delta-G solvation = -3695.996882 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.23614 -38.94681 -38.61754 -35.97521 -34.90665 -32.58388 -32.17969 -30.83320 -29.63608 -29.17664 -27.46810 -26.96333 -26.07815 -22.92334 -22.43505 -21.72990 -20.64281 -19.40853 -19.07172 -18.08953 -16.92593 -16.72908 -16.03080 -15.66200 -15.43101 -15.21656 -15.08078 -14.87854 -14.46143 -14.18789 -13.97736 -13.25066 -12.96319 -12.72695 -12.63512 -12.44700 -12.26483 -12.00823 -11.84876 -11.50297 -11.41671 -11.17941 -11.16903 -10.88727 -10.78126 -10.77289 -10.61807 -10.23949 -10.06610 -9.53110 -9.09386 -8.93734 -8.64340 -8.39755 -8.16206 -7.61652 -7.21568 -6.04680 -4.13195 1.32901 1.69299 2.82137 3.16022 3.28411 3.35015 3.37010 3.51498 3.71980 3.97051 4.33427 4.62803 4.81591 4.97884 5.08446 5.16259 5.19708 5.26450 5.28713 5.40166 5.50847 5.56915 5.63324 5.81509 5.84980 5.95128 6.02431 6.25776 6.37462 6.47270 6.55125 6.57356 6.69522 6.76086 6.89540 7.11238 7.13439 7.31276 7.48781 7.59684 7.64197 7.66069 7.72491 7.87073 8.02911 8.28431 8.85558 8.92674 9.38335 9.56408 11.00699 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.016901 B = 0.003793 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.298569 B = 7380.515122 C = 8400.565712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.047 0.953 5 C -0.530 4.530 6 H 0.060 0.940 7 C 0.065 3.935 8 N -0.883 5.883 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.715 5.715 14 C 0.507 3.493 15 O -0.541 6.541 16 C -0.072 4.072 17 C -0.113 4.113 18 C 0.040 3.960 19 N -0.593 5.593 20 H 0.415 0.585 21 C 0.133 3.867 22 C -0.176 4.176 23 C -0.060 4.060 24 C -0.254 4.254 25 C 0.188 3.812 26 O -0.304 6.304 27 C 0.028 3.972 28 C -0.118 4.118 29 H 0.019 0.981 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.029 0.971 33 H 0.096 0.904 34 H 0.263 0.737 35 H 0.386 0.614 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.168 0.832 39 H 0.117 0.883 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.273 11.392 -11.194 19.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.165 4.165 3 C 0.170 3.830 4 H 0.064 0.936 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.363 5.363 14 C 0.291 3.709 15 O -0.419 6.419 16 C -0.112 4.112 17 C -0.120 4.120 18 C -0.085 4.085 19 N -0.196 5.196 20 H 0.251 0.749 21 C 0.024 3.976 22 C -0.197 4.197 23 C -0.080 4.080 24 C -0.274 4.274 25 C 0.142 3.858 26 O -0.216 6.216 27 C -0.067 4.067 28 C -0.123 4.123 29 H 0.038 0.962 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.217 0.783 36 H 0.115 0.885 37 H 0.107 0.893 38 H 0.185 0.815 39 H 0.135 0.865 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.758 11.020 -10.414 19.187 hybrid contribution 0.860 0.056 -0.072 0.865 sum -10.898 11.076 -10.486 18.746 Atomic orbital electron populations 1.21824 0.98416 0.97704 1.01308 1.21921 0.92565 1.00049 1.02015 1.18689 0.93898 0.88985 0.81408 0.93554 1.21271 0.90948 1.38665 1.05996 0.92166 1.24888 0.98402 0.94961 0.95490 1.69909 1.34975 1.37999 1.09219 0.86494 0.85179 0.77555 0.78124 1.20656 1.21167 1.19879 1.46446 1.14868 1.56691 1.18286 1.20249 0.82547 0.78974 0.89102 1.90660 1.51483 1.59232 1.40489 1.20051 0.93363 1.00539 0.97283 1.19552 0.93877 0.93655 1.04914 1.21464 0.85411 0.96568 1.05009 1.41609 1.08770 1.14638 1.54596 0.74863 1.17891 0.92357 0.88504 0.98841 1.19796 0.99004 0.93158 1.07734 1.20443 0.93012 0.97356 0.97151 1.20842 0.95429 0.99388 1.11752 1.18410 0.82211 0.92258 0.92949 1.86138 1.16575 1.42132 1.76779 1.23056 0.98011 0.87882 0.97728 1.18178 0.91559 0.95021 1.07577 0.96162 0.93298 0.94149 0.95182 0.88551 0.92711 0.78260 0.88485 0.89290 0.81465 0.86511 0.85881 0.85699 0.92950 0.92652 0.88167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 37.16 0.32 -2.79 16 2 C -0.13 -3.15 5.45 -26.73 -0.15 -3.30 16 3 C 0.27 7.01 2.24 -69.08 -0.15 6.86 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.23 8.73 -34.44 -0.30 -14.53 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -25.19 11.31 55.43 0.63 -24.56 16 9 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.71 -15.21 5.02 -54.93 -0.28 -15.49 16 14 C 0.51 10.43 6.39 -10.99 -0.07 10.36 16 15 O -0.54 -13.25 13.17 5.55 0.07 -13.17 16 16 C -0.07 -1.13 6.01 -29.04 -0.17 -1.30 16 17 C -0.11 -1.82 4.81 -102.72 -0.49 -2.31 16 18 C 0.04 0.53 11.74 -16.69 -0.20 0.33 16 19 N -0.59 -7.08 6.07 -10.64 -0.06 -7.15 16 20 H 0.41 3.38 8.96 -40.82 -0.37 3.02 16 21 C 0.13 1.90 7.27 -84.00 -0.61 1.29 16 22 C -0.18 -2.17 10.06 -39.41 -0.40 -2.57 16 23 C -0.06 -0.72 10.01 -39.57 -0.40 -1.12 16 24 C -0.25 -3.43 9.04 -39.42 -0.36 -3.78 16 25 C 0.19 3.06 6.72 -38.94 -0.26 2.80 16 26 O -0.30 -4.95 9.76 -19.36 -0.19 -5.14 16 27 C 0.03 0.34 9.81 101.05 0.99 1.33 16 28 C -0.12 -1.98 6.30 -105.03 -0.66 -2.64 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 1.21 7.85 -51.93 -0.41 0.81 16 31 H 0.04 0.89 5.64 -51.93 -0.29 0.60 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 2.65 5.96 -51.93 -0.31 2.34 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.39 7.15 8.54 -40.82 -0.35 6.80 16 36 H 0.10 1.47 7.62 -51.93 -0.40 1.07 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 41 H 0.13 1.39 6.29 -52.48 -0.33 1.06 16 42 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 43 H 0.05 0.63 7.67 -51.93 -0.40 0.23 16 44 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 361.13 15.07 5.44 5.44 Total: -1.00 -34.29 361.13 -8.55 -42.84 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -6.14 Total: 11.11 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -3.00 Total: -9.70 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.29 Total: -47.20 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.12 Total: -18.32 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.29 -8.55 -42.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183947559.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.637 kcal (2) G-P(sol) polarization free energy of solvation -34.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds