Wall clock time and date at job start Tue Mar 31 2020 11:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 N 1.46507 * 109.47144 * 295.00275 * 3 2 1 14 14 C 1.34773 * 120.00337 * 85.00358 * 13 3 2 15 15 O 1.21285 * 119.99653 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00176 * 180.02562 * 14 13 3 17 17 C 1.50696 * 109.46967 * 179.97438 * 16 14 13 18 18 C 1.34217 * 126.50134 * 265.01586 * 17 16 14 19 19 N 1.36935 * 109.88832 * 180.02562 * 18 17 16 20 20 H 0.96995 * 125.06498 * 179.97438 * 19 18 17 21 21 C 1.37692 * 109.86409 * 0.02562 * 19 18 17 22 22 C 1.39220 * 133.37981 * 179.97438 * 21 19 18 23 23 C 1.37714 * 120.02533 * 180.02562 * 22 21 19 24 24 C 1.38793 * 120.72117 * 0.02562 * 23 22 21 25 25 C 1.38117 * 120.31798 * 359.97438 * 24 23 22 26 26 O 1.35880 * 120.22713 * 179.97438 * 25 24 23 27 27 C 1.42899 * 116.99399 * 0.02562 * 26 25 24 28 28 C 1.40061 * 119.55324 * 359.66313 * 25 24 23 29 29 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 31 31 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 32 32 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 33 33 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 34 34 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 35 35 H 0.96999 * 119.99253 * 265.00221 * 13 3 2 36 36 H 1.09003 * 109.46719 * 299.99416 * 16 14 13 37 37 H 1.08991 * 109.47126 * 59.99074 * 16 14 13 38 38 H 1.08002 * 125.05848 * 359.97438 * 18 17 16 39 39 H 1.07999 * 119.98724 * 0.02562 * 22 21 19 40 40 H 1.08005 * 119.63701 * 179.97438 * 23 22 21 41 41 H 1.08008 * 119.84019 * 179.97438 * 24 23 22 42 42 H 1.09002 * 109.47498 * 299.99729 * 27 26 25 43 43 H 1.09000 * 109.47370 * 59.99877 * 27 26 25 44 44 H 1.09006 * 109.46873 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.4486 2.1066 2.0771 11 1 6.4366 -0.3171 2.1526 12 1 6.6108 0.8288 0.0225 13 7 1.6523 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3670 15 8 -0.3396 2.6320 -0.4343 16 6 0.0361 3.3377 -2.6548 17 6 -1.3617 3.8852 -2.5234 18 6 -2.4962 3.2776 -2.9043 19 7 -3.5704 4.0803 -2.6269 20 1 -4.4958 3.8565 -2.8121 21 6 -3.1407 5.2528 -2.0468 22 6 -3.8004 6.3866 -1.5803 23 6 -3.0811 7.4274 -1.0363 24 6 -1.6977 7.3623 -0.9460 25 6 -1.0209 6.2480 -1.4019 26 8 0.3336 6.1864 -1.3130 27 6 0.9975 7.3122 -0.7351 28 6 -1.7406 5.1790 -1.9505 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8899 34 1 3.8292 -0.0558 2.9526 35 1 2.2719 2.1232 -1.9978 36 1 0.7275 4.1530 -2.8679 37 1 0.0672 2.6131 -3.4684 38 1 -2.5534 2.3012 -3.3624 39 1 -4.8766 6.4500 -1.6452 40 1 -3.5992 8.3042 -0.6768 41 1 -1.1477 8.1870 -0.5171 42 1 0.7830 8.2030 -1.3253 43 1 0.6434 7.4584 0.2853 44 1 2.0728 7.1335 -0.7240 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183947559.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:24 Heat of formation + Delta-G solvation = -45.176118 kcal Electronic energy + Delta-G solvation = -26766.507649 eV Core-core repulsion = 23069.514513 eV Total energy + Delta-G solvation = -3696.993136 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.25030 -40.38895 -39.92308 -37.04518 -36.74147 -34.20969 -33.76960 -32.62550 -30.76984 -30.18608 -29.07753 -28.13030 -27.45364 -24.91226 -23.42524 -22.73102 -22.33645 -21.07612 -20.46649 -19.26582 -18.61629 -17.79618 -17.31553 -17.13279 -16.95928 -16.58745 -16.26970 -16.09935 -15.95847 -15.69166 -15.13246 -14.59732 -14.54690 -14.32225 -14.09148 -13.61594 -13.43701 -13.42560 -13.18776 -13.13439 -12.81799 -12.81064 -12.69369 -12.54675 -12.34085 -12.13000 -12.00318 -11.74354 -11.69269 -11.52963 -11.00831 -10.58668 -10.44754 -9.97292 -9.47807 -9.17305 -8.24741 -8.12282 -6.29855 0.31531 0.66998 1.45209 1.45672 1.56515 1.73891 2.10478 2.24420 2.41202 2.53458 2.87477 3.05460 3.16684 3.85691 4.04938 4.09424 4.15118 4.28829 4.38993 4.39994 4.50574 4.51549 4.53926 4.59125 4.61847 4.71374 4.77209 4.81574 4.88389 4.94527 5.11154 5.18783 5.30326 5.42243 5.49874 5.59688 5.60692 5.70097 5.74175 5.83685 5.86259 6.03165 6.10363 6.22951 6.59400 6.79928 6.80841 7.18361 7.38181 7.80170 8.92583 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.016901 B = 0.003793 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.298569 B = 7380.515122 C = 8400.565712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.119 4.119 3 C 0.282 3.718 4 H -0.011 1.011 5 C -0.546 4.546 6 H 0.070 0.930 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.969 3.031 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.259 1.259 13 N -0.712 5.712 14 C 0.504 3.496 15 O -0.583 6.583 16 C -0.055 4.055 17 C -0.160 4.160 18 C 0.057 3.943 19 N -0.580 5.580 20 H 0.433 0.567 21 C 0.115 3.885 22 C -0.174 4.174 23 C -0.065 4.065 24 C -0.256 4.256 25 C 0.152 3.848 26 O -0.335 6.335 27 C 0.022 3.978 28 C -0.156 4.156 29 H 0.044 0.956 30 H 0.018 0.982 31 H 0.048 0.952 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.263 0.737 35 H 0.401 0.599 36 H 0.099 0.901 37 H 0.125 0.875 38 H 0.201 0.799 39 H 0.148 0.852 40 H 0.158 0.842 41 H 0.143 0.857 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.924 11.880 -13.037 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.158 4.158 3 C 0.178 3.822 4 H 0.007 0.993 5 C -0.584 4.584 6 H 0.088 0.912 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.794 3.206 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.183 1.183 13 N -0.361 5.361 14 C 0.292 3.708 15 O -0.464 6.464 16 C -0.095 4.095 17 C -0.167 4.167 18 C -0.069 4.069 19 N -0.185 5.185 20 H 0.273 0.727 21 C 0.007 3.993 22 C -0.195 4.195 23 C -0.084 4.084 24 C -0.276 4.276 25 C 0.106 3.894 26 O -0.248 6.248 27 C -0.072 4.072 28 C -0.162 4.162 29 H 0.063 0.937 30 H 0.037 0.963 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.235 0.765 36 H 0.117 0.883 37 H 0.143 0.857 38 H 0.217 0.783 39 H 0.166 0.834 40 H 0.175 0.825 41 H 0.160 0.840 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.431 11.528 -12.303 20.948 hybrid contribution 0.968 -0.032 0.530 1.104 sum -11.463 11.496 -11.773 20.054 Atomic orbital electron populations 1.21645 0.96979 0.98870 1.00207 1.21760 0.93756 0.99215 1.01104 1.18254 0.93362 0.89022 0.81586 0.99337 1.21617 0.91620 1.38680 1.06495 0.91153 1.25782 1.03277 0.94448 0.95047 1.70071 1.37011 1.38714 1.09751 0.85393 0.79224 0.77371 0.78634 1.20510 1.20958 1.18332 1.46250 1.15827 1.56737 1.17293 1.21135 0.81417 0.77900 0.90355 1.90635 1.52640 1.60607 1.42484 1.19932 0.93747 1.00800 0.95023 1.19736 0.94617 0.94565 1.07786 1.21954 0.84900 0.97129 1.02901 1.41620 1.09583 1.13733 1.53535 0.72686 1.18225 0.91881 0.89757 0.99474 1.20233 1.00619 0.92282 1.06336 1.20903 0.92530 0.98495 0.96517 1.21186 0.96452 0.99073 1.10927 1.18781 0.82355 0.93502 0.94787 1.86067 1.17194 1.44026 1.77516 1.23247 0.98062 0.87961 0.97953 1.18683 0.93119 0.95812 1.08539 0.93681 0.96275 0.93310 0.93899 0.91390 0.92744 0.76472 0.88285 0.85683 0.78268 0.83418 0.82483 0.83981 0.90536 0.92785 0.87586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 8.51 71.98 0.61 -4.96 16 2 C -0.12 -6.06 5.45 30.60 0.17 -5.89 16 3 C 0.28 14.99 2.24 44.24 0.10 15.09 16 4 H -0.01 -0.73 7.58 -2.39 -0.02 -0.74 16 5 C -0.55 -29.70 8.73 25.60 0.22 -29.48 16 6 H 0.07 3.59 7.74 -2.92 -0.02 3.57 16 7 C 0.01 0.78 5.29 84.66 0.45 1.23 16 8 N -0.92 -53.84 11.31 21.45 0.24 -53.59 16 9 Si 0.97 42.87 29.54 68.60 2.03 44.89 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 13 N -0.71 -30.66 5.02 -446.09 -2.24 -32.90 16 14 C 0.50 21.05 6.39 87.66 0.56 21.61 16 15 O -0.58 -29.59 13.17 -3.05 -0.04 -29.63 16 16 C -0.05 -1.69 6.01 29.10 0.17 -1.52 16 17 C -0.16 -5.06 4.81 -18.63 -0.09 -5.15 16 18 C 0.06 1.40 11.74 82.98 0.97 2.38 16 19 N -0.58 -12.71 6.07 -187.57 -1.14 -13.85 16 20 H 0.43 5.91 8.96 -92.71 -0.83 5.08 16 21 C 0.12 3.18 7.27 39.02 0.28 3.46 16 22 C -0.17 -3.93 10.06 22.38 0.23 -3.70 16 23 C -0.07 -1.44 10.01 22.28 0.22 -1.22 16 24 C -0.26 -6.78 9.04 22.37 0.20 -6.57 16 25 C 0.15 5.03 6.72 22.68 0.15 5.18 16 26 O -0.33 -11.33 9.76 -92.20 -0.90 -12.23 16 27 C 0.02 0.54 9.81 113.37 1.11 1.65 16 28 C -0.16 -5.27 6.30 -20.13 -0.13 -5.39 16 29 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.02 0.96 7.85 -2.39 -0.02 0.94 16 31 H 0.05 2.16 5.64 -2.39 -0.01 2.14 16 32 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.07 3.86 5.96 -2.39 -0.01 3.85 16 34 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 35 H 0.40 14.67 8.54 -92.71 -0.79 13.88 16 36 H 0.10 3.00 7.62 -2.39 -0.02 2.99 16 37 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.20 3.39 8.06 -2.91 -0.02 3.36 16 39 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 40 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 41 H 0.14 3.05 6.29 -2.91 -0.02 3.03 16 42 H 0.08 1.41 7.66 -2.39 -0.02 1.39 16 43 H 0.05 1.27 7.67 -2.39 -0.02 1.25 16 44 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 Total: -1.00 -78.38 361.13 2.61 -75.77 By element: Atomic # 1 Polarization: 35.40 SS G_CDS: -0.58 Total: 34.81 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 5.24 Total: -13.29 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -3.14 Total: -100.33 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -0.94 Total: -41.85 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -78.38 2.61 -75.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183947559.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.593 kcal (2) G-P(sol) polarization free energy of solvation -78.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds