Wall clock time and date at job start Tue Mar 31 2020 11:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47326 * 2 1 4 4 H 1.09002 * 109.46577 * 305.00173 * 3 2 1 5 5 C 1.50699 * 109.46841 * 185.00142 * 3 2 1 6 6 H 1.08005 * 119.99506 * 239.99524 * 5 3 2 7 7 C 1.37870 * 120.00366 * 59.99839 * 5 3 2 8 8 N 1.31515 * 119.99802 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00179 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.46831 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47110 * 120.00364 * 9 7 5 12 12 H 1.48504 * 109.47118 * 240.00100 * 9 7 5 13 13 N 1.46501 * 109.47089 * 64.99920 * 3 2 1 14 14 C 1.34773 * 119.99974 * 275.00040 * 13 3 2 15 15 O 1.21281 * 120.00004 * 0.02562 * 14 13 3 16 16 C 1.50706 * 119.99922 * 179.97438 * 14 13 3 17 17 C 1.50698 * 109.47102 * 179.97438 * 16 14 13 18 18 C 1.34239 * 126.49074 * 264.98030 * 17 16 14 19 19 N 1.36805 * 109.93637 * 180.02562 * 18 17 16 20 20 H 0.97001 * 125.07206 * 179.97438 * 19 18 17 21 21 C 1.37898 * 109.85030 * 0.22927 * 19 18 17 22 22 C 1.39099 * 133.35439 * 179.76766 * 21 19 18 23 23 C 1.37691 * 119.99291 * 179.97438 * 22 21 19 24 24 C 1.39264 * 120.61845 * 0.02562 * 23 22 21 25 25 O 1.35991 * 119.85859 * 179.97438 * 24 23 22 26 26 C 1.42893 * 117.00496 * 0.02562 * 25 24 23 27 27 C 1.38044 * 120.26920 * 359.63824 * 24 23 22 28 28 C 1.39668 * 119.60645 * 0.56118 * 27 24 23 29 29 H 1.09003 * 109.47090 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46930 * 299.99848 * 1 2 3 31 31 H 1.08992 * 109.47292 * 59.99986 * 1 2 3 32 32 H 1.09002 * 109.47143 * 239.99687 * 2 1 3 33 33 H 1.09007 * 109.46831 * 120.00139 * 2 1 3 34 34 H 0.97003 * 119.99799 * 179.97438 * 8 7 5 35 35 H 0.97005 * 119.99863 * 94.99870 * 13 3 2 36 36 H 1.08997 * 109.46592 * 60.00066 * 16 14 13 37 37 H 1.08999 * 109.47139 * 300.00363 * 16 14 13 38 38 H 1.08001 * 125.03523 * 0.05020 * 18 17 16 39 39 H 1.07996 * 120.00155 * 359.97438 * 22 21 19 40 40 H 1.07994 * 119.68704 * 179.97438 * 23 22 21 41 41 H 1.08999 * 109.47150 * 179.97438 * 26 25 24 42 42 H 1.09000 * 109.47333 * 300.00300 * 26 25 24 43 43 H 1.09002 * 109.47209 * 60.00018 * 26 25 24 44 44 H 1.07999 * 120.19252 * 179.97438 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4061 0.3374 -2.1733 9 14 6.0050 0.8810 -1.3818 10 1 6.5987 1.5460 -0.1942 11 1 6.4970 -0.5178 -1.4630 12 1 6.3991 1.6164 -2.6102 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3395 2.6319 0.4344 16 6 0.0363 3.3377 2.6549 17 6 -1.3610 3.8863 2.5231 18 6 -1.6975 5.1396 2.1793 19 7 -3.0593 5.2694 2.1641 20 1 -3.5392 6.0835 1.9452 21 6 -3.6478 4.0719 2.5120 22 6 -4.9698 3.6629 2.6529 23 6 -5.2538 2.3671 3.0219 24 6 -4.2277 1.4556 3.2578 25 8 -4.5258 0.1798 3.6220 26 6 -5.9099 -0.1540 3.7424 27 6 -2.9094 1.8401 3.1166 28 6 -2.6094 3.1531 2.7469 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8292 -0.0605 -2.9502 35 1 2.2720 2.1231 1.9978 36 1 0.7278 4.1529 2.8679 37 1 0.0674 2.6130 3.4685 38 1 -0.9969 5.9284 1.9484 39 1 -5.7734 4.3616 2.4728 40 1 -6.2820 2.0549 3.1302 41 1 -6.0074 -1.1988 4.0373 42 1 -6.3728 0.4817 4.4972 43 1 -6.4056 0.0003 2.7839 44 1 -2.1145 1.1324 3.3003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183948922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:35 Heat of formation + Delta-G solvation = -45.176072 kcal Electronic energy + Delta-G solvation = -26248.324195 eV Core-core repulsion = 22551.331061 eV Total energy + Delta-G solvation = -3696.993134 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.20459 -40.45756 -40.05081 -36.89183 -36.53589 -34.22397 -33.94190 -32.73328 -31.24624 -29.76090 -29.14972 -28.05599 -27.33365 -24.91804 -23.87453 -22.43642 -22.34888 -21.07806 -20.34577 -19.02968 -18.57662 -18.40256 -17.32893 -17.12730 -17.05060 -16.54270 -16.52131 -16.13302 -15.86640 -15.19125 -14.85553 -14.61235 -14.57626 -14.37436 -14.06020 -13.75766 -13.61702 -13.49212 -13.36708 -13.15069 -12.90553 -12.88942 -12.75448 -12.65801 -12.27051 -12.11756 -12.00658 -11.56490 -11.54706 -11.44099 -10.99594 -10.66504 -10.51821 -10.29225 -9.49060 -8.86392 -8.35683 -8.12345 -6.29743 0.15691 0.70381 1.45401 1.46310 1.58398 1.73050 2.07757 2.28948 2.41318 2.53359 2.84216 3.04590 3.16918 3.80480 3.92147 4.05790 4.16144 4.32593 4.41430 4.45355 4.45511 4.49255 4.51239 4.58754 4.65026 4.75127 4.75874 4.80181 4.83883 4.99465 5.10715 5.11224 5.28574 5.40440 5.41338 5.47718 5.59954 5.61943 5.71672 5.84325 5.85283 6.02143 6.11883 6.22034 6.59191 6.80423 6.81891 7.17496 7.38521 7.78975 8.92935 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018785 B = 0.003216 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.179592 B = 8705.164508 C = 9699.976744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.120 4.120 3 C 0.281 3.719 4 H -0.005 1.005 5 C -0.544 4.544 6 H 0.073 0.927 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 0.970 3.030 10 H -0.259 1.259 11 H -0.281 1.281 12 H -0.285 1.285 13 N -0.712 5.712 14 C 0.496 3.504 15 O -0.582 6.582 16 C -0.055 4.055 17 C -0.187 4.187 18 C 0.082 3.918 19 N -0.583 5.583 20 H 0.432 0.568 21 C 0.048 3.952 22 C -0.086 4.086 23 C -0.185 4.185 24 C 0.087 3.913 25 O -0.345 6.345 26 C 0.020 3.980 27 C -0.140 4.140 28 C -0.076 4.076 29 H 0.039 0.961 30 H 0.043 0.957 31 H 0.021 0.979 32 H 0.069 0.931 33 H 0.039 0.961 34 H 0.263 0.737 35 H 0.403 0.597 36 H 0.128 0.872 37 H 0.105 0.895 38 H 0.201 0.799 39 H 0.156 0.844 40 H 0.159 0.841 41 H 0.113 0.887 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.381 8.479 14.669 23.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.013 0.987 5 C -0.582 4.582 6 H 0.091 0.909 7 C -0.187 4.187 8 N -0.556 5.556 9 Si 0.795 3.205 10 H -0.182 1.182 11 H -0.207 1.207 12 H -0.211 1.211 13 N -0.361 5.361 14 C 0.284 3.716 15 O -0.463 6.463 16 C -0.095 4.095 17 C -0.194 4.194 18 C -0.046 4.046 19 N -0.188 5.188 20 H 0.271 0.729 21 C -0.058 4.058 22 C -0.107 4.107 23 C -0.204 4.204 24 C 0.042 3.958 25 O -0.259 6.259 26 C -0.074 4.074 27 C -0.159 4.159 28 C -0.081 4.081 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.040 0.960 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.237 0.763 36 H 0.146 0.854 37 H 0.123 0.877 38 H 0.218 0.782 39 H 0.174 0.826 40 H 0.177 0.823 41 H 0.131 0.869 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.849 8.329 13.842 23.342 hybrid contribution 0.848 -0.086 -0.511 0.994 sum -16.001 8.243 13.331 22.398 Atomic orbital electron populations 1.21628 0.97241 0.98607 1.00103 1.21782 0.93385 0.99685 1.01019 1.18266 0.93449 0.88825 0.81792 0.98733 1.21644 0.91524 1.38492 1.06524 0.90898 1.25802 1.03313 0.94506 0.95119 1.70078 1.36958 1.38654 1.09906 0.85323 0.79195 0.77731 0.78225 1.18240 1.20652 1.21077 1.46276 1.15926 1.56607 1.17322 1.21328 0.81278 0.78504 0.90520 1.90651 1.52243 1.60732 1.42666 1.19953 0.93587 1.01718 0.94289 1.19761 0.92503 0.93990 1.13165 1.22039 0.84255 0.98436 0.99856 1.41591 1.05526 1.10952 1.60683 0.72857 1.18401 0.94232 0.87152 1.06020 1.20148 0.92873 0.96407 1.01246 1.21164 0.99281 0.93350 1.06595 1.18763 0.93454 0.84504 0.99112 1.86051 1.29415 1.26099 1.84359 1.23294 0.78888 1.03127 1.02109 1.19660 0.94417 0.95257 1.06599 1.18985 0.93801 0.92760 1.02565 0.94244 0.93781 0.95984 0.91253 0.94239 0.92761 0.76276 0.85417 0.87670 0.78207 0.82617 0.82343 0.86863 0.91210 0.92073 0.87381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 8.51 71.98 0.61 -5.18 16 2 C -0.12 -6.19 5.45 30.59 0.17 -6.03 16 3 C 0.28 14.75 2.24 44.25 0.10 14.85 16 4 H -0.01 -0.33 7.58 -2.39 -0.02 -0.35 16 5 C -0.54 -29.13 8.73 25.60 0.22 -28.91 16 6 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 7 C 0.01 0.67 5.29 84.65 0.45 1.12 16 8 N -0.92 -53.65 11.29 21.44 0.24 -53.41 16 9 Si 0.97 42.60 29.54 68.60 2.03 44.63 16 10 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 N -0.71 -29.75 5.02 -446.09 -2.24 -31.99 16 14 C 0.50 19.87 6.39 87.66 0.56 20.43 16 15 O -0.58 -28.73 13.17 -3.03 -0.04 -28.77 16 16 C -0.06 -1.56 6.23 29.10 0.18 -1.38 16 17 C -0.19 -5.51 4.81 -18.63 -0.09 -5.60 16 18 C 0.08 1.89 11.73 83.00 0.97 2.87 16 19 N -0.58 -12.00 6.08 -187.53 -1.14 -13.14 16 20 H 0.43 5.41 8.96 -92.71 -0.83 4.58 16 21 C 0.05 1.26 7.27 38.98 0.28 1.54 16 22 C -0.09 -1.85 10.06 22.35 0.22 -1.63 16 23 C -0.18 -4.14 9.01 22.39 0.20 -3.94 16 24 C 0.09 2.53 6.68 22.47 0.15 2.68 16 25 O -0.34 -9.39 10.49 -93.45 -0.98 -10.37 16 26 C 0.02 0.32 9.81 113.37 1.11 1.43 16 27 C -0.14 -4.68 10.03 22.57 0.23 -4.46 16 28 C -0.08 -2.44 6.35 -20.20 -0.13 -2.57 16 29 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.04 2.11 5.64 -2.39 -0.01 2.09 16 31 H 0.02 1.14 7.85 -2.39 -0.02 1.12 16 32 H 0.07 3.99 5.95 -2.39 -0.01 3.98 16 33 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 35 H 0.40 14.10 8.54 -92.70 -0.79 13.31 16 36 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.20 3.14 8.06 -2.91 -0.02 3.12 16 39 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 40 H 0.16 2.41 6.26 -2.91 -0.02 2.39 16 41 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.07 0.84 7.65 -2.39 -0.02 0.82 16 43 H 0.06 0.85 7.65 -2.39 -0.02 0.84 16 44 H 0.11 3.82 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -78.06 362.52 2.53 -75.53 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: -0.58 Total: 32.31 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: 5.25 Total: -14.78 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -3.14 Total: -98.54 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -1.02 Total: -39.14 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -78.06 2.53 -75.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183948922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.350 kcal (2) G-P(sol) polarization free energy of solvation -78.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds