Wall clock time and date at job start Tue Mar 31 2020 11:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47068 * 2 1 4 4 H 1.08998 * 109.47589 * 305.00376 * 3 2 1 5 5 C 1.50702 * 109.47174 * 185.00065 * 3 2 1 6 6 H 1.08006 * 120.00057 * 240.27247 * 5 3 2 7 7 C 1.37870 * 120.00218 * 59.99863 * 5 3 2 8 8 N 1.31518 * 119.99947 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00470 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46804 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47287 * 119.99924 * 9 7 5 12 12 H 1.48506 * 109.47260 * 240.00258 * 9 7 5 13 13 N 1.46504 * 109.47414 * 65.00142 * 3 2 1 14 14 C 1.34774 * 119.99922 * 275.00144 * 13 3 2 15 15 O 1.21591 * 120.00291 * 359.97438 * 14 13 3 16 16 N 1.34776 * 119.99928 * 179.97438 * 14 13 3 17 17 C 1.40150 * 119.99925 * 174.68581 * 16 14 13 18 18 C 1.39323 * 119.94025 * 146.76641 * 17 16 14 19 19 C 1.37738 * 120.62751 * 180.02562 * 18 17 16 20 20 C 1.38943 * 120.05588 * 359.95700 * 19 18 17 21 21 O 1.34919 * 133.32266 * 179.97438 * 20 19 18 22 22 C 1.34436 * 110.89381 * 180.02562 * 21 20 19 23 23 C 1.50693 * 124.92124 * 179.97438 * 22 21 20 24 24 C 1.33996 * 110.15407 * 359.97438 * 22 21 20 25 25 C 1.50700 * 126.90108 * 180.02562 * 24 22 21 26 26 C 1.40465 * 119.43057 * 0.02562 * 20 19 18 27 27 C 1.38312 * 119.93844 * 326.49124 * 17 16 14 28 28 H 1.08999 * 109.47270 * 59.99790 * 1 2 3 29 29 H 1.08997 * 109.47102 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46654 * 299.99621 * 1 2 3 31 31 H 1.08994 * 109.47037 * 239.99701 * 2 1 3 32 32 H 1.09003 * 109.46926 * 119.99836 * 2 1 3 33 33 H 0.97002 * 120.00431 * 179.97438 * 8 7 5 34 34 H 0.97000 * 119.99988 * 94.99447 * 13 3 2 35 35 H 0.96994 * 120.00286 * 354.68857 * 16 14 13 36 36 H 1.08003 * 119.68341 * 359.97438 * 18 17 16 37 37 H 1.07997 * 119.97160 * 179.97438 * 19 18 17 38 38 H 1.08995 * 109.47661 * 0.02562 * 23 22 21 39 39 H 1.09002 * 109.46950 * 120.02346 * 23 22 21 40 40 H 1.08997 * 109.47234 * 240.02024 * 23 22 21 41 41 H 1.08994 * 109.46790 * 90.02923 * 25 24 22 42 42 H 1.09008 * 109.46780 * 210.02258 * 25 24 22 43 43 H 1.08997 * 109.47180 * 330.02830 * 25 24 22 44 44 H 1.08001 * 120.22673 * 0.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1474 1.8849 0.6544 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8800 -1.3811 10 1 6.5988 1.5453 -0.1936 11 1 6.4962 -0.5190 -1.4627 12 1 6.4000 1.6157 -2.6092 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3413 2.6326 0.4318 16 7 0.0785 3.2665 2.5188 17 6 -1.1410 3.9521 2.6027 18 6 -1.8463 3.9720 3.8040 19 6 -3.0464 4.6409 3.9022 20 6 -3.5650 5.3054 2.7977 21 8 -4.6868 6.0268 2.5940 22 6 -4.7453 6.4750 1.3279 23 6 -5.8623 7.3121 0.7599 24 6 -3.6666 6.0695 0.6443 25 6 -3.3498 6.3580 -0.8005 26 6 -2.8558 5.2872 1.5854 27 6 -1.6393 4.6125 1.4942 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8292 -0.0604 -2.9503 34 1 2.2720 2.1231 1.9978 35 1 0.6658 3.2255 3.2897 36 1 -1.4487 3.4573 4.6663 37 1 -3.5844 4.6491 4.8385 38 1 -6.6086 7.4950 1.5329 39 1 -5.4614 8.2633 0.4096 40 1 -6.3246 6.7836 -0.0737 41 1 -2.7747 7.2813 -0.8690 42 1 -2.7674 5.5355 -1.2160 43 1 -4.2781 6.4657 -1.3615 44 1 -1.0920 4.6015 0.5632 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186486749.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:07 Heat of formation + Delta-G solvation = -29.591668 kcal Electronic energy + Delta-G solvation = -26106.765251 eV Core-core repulsion = 22410.447908 eV Total energy + Delta-G solvation = -3696.317344 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.42374 -41.46162 -39.03476 -37.01107 -35.47022 -35.26101 -34.27965 -32.73301 -32.03817 -30.57834 -29.40486 -28.57488 -27.07812 -25.17575 -24.12741 -22.80028 -22.23946 -21.34369 -20.98239 -19.79009 -18.89308 -18.07107 -17.70548 -17.29722 -17.15001 -16.57790 -16.41952 -15.89133 -15.40064 -15.22261 -14.71524 -14.55136 -14.43885 -14.25428 -14.17282 -13.90766 -13.76073 -13.57319 -13.53339 -13.19227 -13.17734 -13.07362 -12.86137 -12.77711 -12.70007 -12.17558 -12.06817 -11.94034 -11.61761 -11.24507 -11.03913 -10.93066 -10.73725 -10.54587 -9.69932 -9.01827 -8.82648 -8.16019 -6.33022 -0.05907 0.28003 1.32804 1.44459 1.45523 1.56961 1.71838 1.84106 2.19920 2.42291 2.77682 3.13758 3.34625 3.58410 3.68464 3.92800 4.13157 4.24222 4.27401 4.46462 4.49128 4.56833 4.58792 4.66625 4.68960 4.75534 4.78533 4.87169 4.94278 5.02225 5.05928 5.16143 5.20449 5.29893 5.31685 5.35331 5.44381 5.54382 5.59565 5.61659 5.76184 5.82627 5.88221 6.16845 6.22138 6.29507 6.75355 7.26775 7.35619 7.72740 8.89723 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.021418 B = 0.002901 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.005867 B = 9648.086992 C =10137.449996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.120 4.120 3 C 0.297 3.703 4 H -0.002 1.002 5 C -0.545 4.545 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.714 5.714 14 C 0.691 3.309 15 O -0.614 6.614 16 N -0.675 5.675 17 C 0.150 3.850 18 C -0.112 4.112 19 C -0.078 4.078 20 C 0.011 3.989 21 O -0.200 6.200 22 C 0.031 3.969 23 C -0.074 4.074 24 C -0.210 4.210 25 C -0.077 4.077 26 C -0.128 4.128 27 C -0.106 4.106 28 H 0.023 0.977 29 H 0.043 0.957 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.265 0.735 34 H 0.402 0.598 35 H 0.423 0.577 36 H 0.177 0.823 37 H 0.170 0.830 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.076 0.924 42 H 0.044 0.956 43 H 0.093 0.907 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.923 11.775 12.499 22.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C 0.193 3.807 4 H 0.016 0.984 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.184 1.184 11 H -0.204 1.204 12 H -0.212 1.212 13 N -0.366 5.366 14 C 0.392 3.608 15 O -0.494 6.494 16 N -0.325 5.325 17 C 0.054 3.946 18 C -0.132 4.132 19 C -0.097 4.097 20 C -0.036 4.036 21 O -0.103 6.103 22 C -0.016 4.016 23 C -0.130 4.130 24 C -0.212 4.212 25 C -0.134 4.134 26 C -0.130 4.130 27 C -0.127 4.127 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.237 0.763 35 H 0.261 0.739 36 H 0.194 0.806 37 H 0.187 0.813 38 H 0.110 0.890 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.095 0.905 42 H 0.063 0.937 43 H 0.112 0.888 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.691 11.651 11.639 22.069 hybrid contribution 1.777 -0.401 -0.194 1.832 sum -12.914 11.250 11.445 20.599 Atomic orbital electron populations 1.21636 0.97197 0.98824 1.00066 1.21800 0.93492 0.99305 1.01355 1.18268 0.93485 0.88775 0.80164 0.98425 1.21584 0.91237 1.38937 1.06616 0.90933 1.25757 1.03266 0.94395 0.95046 1.70060 1.36985 1.38386 1.09875 0.85319 0.79150 0.77806 0.78173 1.18424 1.20441 1.21151 1.45431 1.13715 1.58978 1.18515 1.16204 0.82974 0.78608 0.83037 1.90903 1.52715 1.65678 1.40082 1.42478 1.20532 1.55256 1.14275 1.17492 0.87561 0.94439 0.95072 1.20951 0.93704 1.01229 0.97319 1.20038 0.95702 0.97327 0.96634 1.19878 0.87367 0.99752 0.96624 1.83922 1.38339 1.57758 1.30277 1.22836 0.98603 0.99068 0.81086 1.20626 0.92946 0.98003 1.01450 1.21200 0.96438 1.05166 0.98349 1.20155 1.02864 1.01451 0.88886 1.19947 0.96435 1.01694 0.94903 1.20384 0.95845 0.97315 0.99145 0.95817 0.93817 0.94071 0.90936 0.93895 0.92602 0.76263 0.73859 0.80618 0.81254 0.88977 0.87554 0.87831 0.90547 0.93679 0.88839 0.87555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 8.51 71.98 0.61 -4.95 16 2 C -0.12 -5.96 5.45 30.59 0.17 -5.79 16 3 C 0.30 15.17 2.24 44.24 0.10 15.27 16 4 H 0.00 -0.13 7.58 -2.39 -0.02 -0.15 16 5 C -0.55 -28.53 8.73 25.60 0.22 -28.31 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 7 C 0.02 0.83 5.29 84.65 0.45 1.27 16 8 N -0.91 -52.17 11.29 21.45 0.24 -51.92 16 9 Si 0.97 41.80 29.54 68.60 2.03 43.83 16 10 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 11 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 13 N -0.71 -29.17 5.03 -461.41 -2.32 -31.49 16 14 C 0.69 27.97 6.86 179.06 1.23 29.19 16 15 O -0.61 -30.23 11.18 -4.00 -0.04 -30.27 16 16 N -0.68 -20.24 5.36 -317.08 -1.70 -21.94 16 17 C 0.15 4.59 6.28 38.09 0.24 4.83 16 18 C -0.11 -2.49 9.93 22.41 0.22 -2.26 16 19 C -0.08 -1.73 10.05 22.32 0.22 -1.51 16 20 C 0.01 0.31 7.41 22.98 0.17 0.48 16 21 O -0.20 -5.32 10.59 -9.93 -0.11 -5.43 16 22 C 0.03 0.73 7.23 24.72 0.18 0.91 16 23 C -0.07 -0.90 9.86 71.23 0.70 -0.20 16 24 C -0.21 -5.94 6.35 -18.59 -0.12 -6.06 16 25 C -0.08 -1.84 10.18 71.24 0.73 -1.12 16 26 C -0.13 -4.24 6.38 -20.21 -0.13 -4.37 16 27 C -0.11 -3.84 8.70 22.57 0.20 -3.64 16 28 H 0.02 1.18 7.84 -2.39 -0.02 1.16 16 29 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.04 1.87 5.65 -2.38 -0.01 1.85 16 31 H 0.07 4.01 5.95 -2.39 -0.01 4.00 16 32 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 34 H 0.40 13.56 8.56 -92.71 -0.79 12.77 16 35 H 0.42 8.92 8.83 -92.71 -0.82 8.10 16 36 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 37 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 38 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.09 1.63 7.85 -2.39 -0.02 1.61 16 44 H 0.11 4.59 6.42 -2.91 -0.02 4.57 16 Total: -1.00 -73.65 361.59 2.72 -70.93 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: -0.57 Total: 32.56 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 5.19 Total: -6.27 kcal Atomic # 7 Polarization: -101.58 SS G_CDS: -3.77 Total: -105.36 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -0.15 Total: -35.70 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -73.65 2.72 -70.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186486749.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.339 kcal (2) G-P(sol) polarization free energy of solvation -73.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds